def apply_roi(self, roi, override_mode=None):
# Force redraw to get rid of ROI. We do this because applying the
# subset state below might end up not having an effect on the viewer,
# for example there may not be any layers, or the active subset may not
# be one of the layers. So we just explicitly redraw here to make sure
# a redraw will happen after this method is called.
self.redraw()
# TODO Does subset get applied to all data or just visible data?
if self.state._layout is None:
return
if not roi.defined():
return
if len(self.layers) == 0:
return
if isinstance(roi, PointROI):
x, y = roi.x, roi.y
xs, ys = self.state._layout.xy
parent_ys = ys[1::3]
xs, ys = xs[::3], ys[::3]
delt = np.abs(x - xs)
delt[y > ys] = np.nan
delt[y < parent_ys] = np.nan
if np.isfinite(delt).any():
select = np.nanargmin(delt)
if self.state.select_substruct:
parent = self.state.reference_data[self.state.parent_att]
select = _substructures(parent, select)
select = np.asarray(select, dtype=np.int)
else:
select = np.array([], dtype=np.int)
subset_state = CategorySubsetState(
self.state.reference_data.pixel_component_ids[0], select)
self.apply_subset_state(subset_state)
else:
raise TypeError("Only PointROI selections are supported")
def apply_roi(self, roi, override_mode=None):
# Force redraw to get rid of ROI. We do this because applying the
# subset state below might end up not having an effect on the viewer,
# for example there may not be any layers, or the active subset may not
# be one of the layers. So we just explicitly redraw here to make sure
# a redraw will happen after this method is called.
self.redraw()
# TODO Does subset get applied to all data or just visible data?
if self.state._layout is None:
return
if not roi.defined():
return
if len(self.layers) == 0:
return
if isinstance(roi, PointROI):
x, y = roi.x, roi.y
xs, ys = self.state._layout.xy
parent_ys = ys[1::3]
xs, ys = xs[::3], ys[::3]
delt = np.abs(x - xs)
delt[y > ys] = np.nan
delt[y < parent_ys] = np.nan
if np.isfinite(delt).any():
select = np.nanargmin(delt)
if self.state.select_substruct:
parent = self.state.reference_data[self.state.parent_att]
select = _substructures(parent, select)
select = np.asarray(select, dtype=np.int)
else:
select = np.array([], dtype=np.int)
subset_state = CategorySubsetState(self.state.reference_data.pixel_component_ids[0], select)
self.apply_subset_state(subset_state)
else:
raise TypeError("Only PointROI selections are supported")
def apply_roi(self, roi, use_current=False):
# TODO Does subset get applied to all data or just visible data?
if self.state._layout is None:
return
if not roi.defined():
return
if len(self.layers) == 0: # Force redraw to get rid of ROI
return self.redraw()
if isinstance(roi, PointROI):
x, y = roi.x, roi.y
xs, ys = self.state._layout.xy
parent_ys = ys[1::3]
xs, ys = xs[::3], ys[::3]
delt = np.abs(x - xs)
delt[y > ys] = np.nan
delt[y < parent_ys] = np.nan
if np.isfinite(delt).any():
select = np.nanargmin(delt)
if self.state.select_substruct:
parent = self.state.reference_data[self.state.parent_att]
select = _substructures(parent, select)
select = np.asarray(select, dtype=np.int)
else:
select = np.array([], dtype=np.int)
subset_state = CategorySubsetState(
self.state.reference_data.pixel_component_ids[0], select)
self.apply_subset_state(subset_state)
else:
raise TypeError("Only PointROI selections are supported")
def apply_roi(self, roi, use_current=False):
# TODO Does subset get applied to all data or just visible data?
if self.state._layout is None:
return
if not roi.defined():
return
if len(self.layers) == 0: # Force redraw to get rid of ROI
return self.redraw()
if isinstance(roi, PointROI):
x, y = roi.x, roi.y
xs, ys = self.state._layout.xy
parent_ys = ys[1::3]
xs, ys = xs[::3], ys[::3]
delt = np.abs(x - xs)
delt[y > ys] = np.nan
delt[y < parent_ys] = np.nan
if np.isfinite(delt).any():
select = np.nanargmin(delt)
if self.state.select_substruct:
parent = self.state.reference_data[self.state.parent_att]
select = _substructures(parent, select)
select = np.asarray(select, dtype=np.int)
else:
select = np.array([], dtype=np.int)
subset_state = CategorySubsetState(self.state.reference_data.pixel_component_ids[0], select)
self.apply_subset_state(subset_state)
else:
raise TypeError("Only PointROI selections are supported")