def deserialize(
cls,
path: Path,
device: Optional[torch.device] = None) -> "PyTorchPredictor":
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
# deserialize transformation chain
with (path / "input_transform.json").open("r") as fp:
transformation = load_json(fp.read())
# deserialize network
with (path / f"prediction_net.json").open("r") as fp:
prediction_net = load_json(fp.read())
prediction_net.load_state_dict(
torch.load(path / "prediction_net_state"))
parameters["device"] = device
return PyTorchPredictor(
input_transform=transformation,
prediction_net=prediction_net,
**parameters,
)
def deserialize(
cls,
path: Path,
ctx: Optional[mx.Context] = None) -> "RepresentableBlockPredictor":
ctx = ctx if ctx is not None else get_mxnet_context()
with mx.Context(ctx):
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
# deserialize transformation chain
with (path / "input_transform.json").open("r") as fp:
transform = load_json(fp.read())
# deserialize prediction network
prediction_net = import_repr_block(path, "prediction_net")
# input_names is derived from the prediction_net
if "input_names" in parameters:
del parameters["input_names"]
parameters["ctx"] = ctx
return RepresentableBlockPredictor(
input_transform=transform,
prediction_net=prediction_net,
**parameters,
)
def deserialize(
cls,
path: Path,
ctx: Optional[mx.Context] = None) -> "SymbolBlockPredictor":
ctx = ctx if ctx is not None else get_mxnet_context()
with mx.Context(ctx):
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
parameters["ctx"] = ctx
# deserialize transformation chain
with (path / "input_transform.json").open("r") as fp:
transform = load_json(fp.read())
# deserialize prediction network
num_inputs = len(parameters["input_names"])
prediction_net = import_symb_block(num_inputs, path,
"prediction_net")
return SymbolBlockPredictor(
input_transform=transform,
prediction_net=prediction_net,
**parameters,
)
def test_component_ctor():
random.seed(5_432_671_244)
A = 100
B = 200
C = 300
x_list = [
Foo(
str(random.randint(0, A)),
Complex(x=random.uniform(0, C), y=str(random.uniform(0, C))),
b=random.uniform(0, B),
) for i in range(4)
]
fields = [
Foo(
a=str(random.randint(0, A)),
b=random.uniform(0, B),
c=Complex(x=str(random.uniform(0, C)), y=random.uniform(0, C)),
) for i in range(5)
]
x_dict = {
i: Foo(
b=random.uniform(0, B),
a=str(random.randint(0, A)),
c=Complex(x=str(random.uniform(0, C)), y=str(random.uniform(0,
C))),
)
for i in range(6)
}
bar01 = Bar(x_list, fields=fields, x_dict=x_dict)
bar02 = load_code(dump_code(bar01))
bar03 = load_json(dump_json(bar02))
def compare_tpes(x, y, z, tpe):
assert tpe == type(x) == type(y) == type(z)
def compare_vals(x, y, z):
assert x == y == z
compare_tpes(bar02.x_list, bar02.x_list, bar03.x_list, tpe=list)
compare_tpes(bar02.x_dict, bar02.x_dict, bar03.x_dict, tpe=dict)
compare_tpes(bar02.fields, bar02.fields, bar03.fields, tpe=list)
compare_vals(len(bar02.x_list), len(bar02.x_list), len(bar03.x_list))
compare_vals(len(bar02.x_dict), len(bar02.x_dict), len(bar03.x_dict))
compare_vals(len(bar02.fields), len(bar02.fields), len(bar03.fields))
compare_vals(bar02.x_list, bar02.x_list, bar03.x_list)
compare_vals(bar02.x_dict, bar02.x_dict, bar03.x_dict)
compare_vals(bar02.fields, bar02.fields, bar03.fields)
baz01 = Baz(a="0", b="9", c=Complex(x="1", y="2"), d="42")
baz02 = load_json(dump_json(baz01))
assert type(baz01) == type(baz02)
assert baz01 == baz02
def import_repr_block(
model_dir: Path, model_name: str, epoch: int = 0
) -> mx.gluon.HybridBlock:
"""
Deserializes a representable Gluon block.
Parameters
----------
model_dir
The path where the model is saved.
model_name
The name identifying the model.
epoch
The epoch number, which together with the `model_name` identifies the
model parameters.
Returns
-------
mx.gluon.HybridBlock:
The deserialized block.
"""
with (model_dir / f"{model_name}-network.json").open("r") as fp:
rb = cast(mx.gluon.HybridBlock, load_json(fp.read()))
rb.load_parameters(
str(model_dir / f"{model_name}-{epoch:04}.params"),
ctx=mx.current_context(),
allow_missing=False,
ignore_extra=False,
)
return rb
def deserialize(
cls,
path: Path,
ctx: Optional[mx.Context] = None) -> "NBEATSEnsemblePredictor":
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
# basically save each predictor in its own sub-folder
num_predictors = parameters["num_predictors"]
num_digits = len(str(num_predictors))
predictors = []
# load all the predictors individually and also make sure not to load anything else by mistake
predictor_locations = [
f"predictor_{str(index).zfill(num_digits)}"
for index in range(num_predictors)
]
# deserialize predictors
for sub_dir in predictor_locations:
predictors.append(
RepresentableBlockPredictor.deserialize(path / sub_dir, ctx))
return NBEATSEnsemblePredictor(
prediction_length=parameters["prediction_length"],
freq=parameters["freq"],
predictors=predictors,
aggregation_method=parameters["aggregation_method"],
)
def assert_serializable(x: transform.Transformation):
t = fqname_for(x.__class__)
y = load_json(dump_json(x))
z = load_code(dump_code(x))
assert dump_json(x) == dump_json(
y), f"Code serialization for transformer {t} does not work"
assert dump_code(x) == dump_code(
z), f"JSON serialization for transformer {t} does not work"
def import_symb_block(
num_inputs: int, model_dir: Path, model_name: str, epoch: int = 0
) -> mx.gluon.SymbolBlock:
"""
Deserializes a hybridized Gluon `HybridBlock` as a `SymbolBlock`.
Parameters
----------
num_inputs
The number of inputs of the serialized block.
model_dir
The path where the model is saved.
model_name
The name identifying the model.
epoch
The epoch number, which together with the `model_name` identifies the
model parameters.
Returns
-------
mx.gluon.SymbolBlock
The deserialized block.
"""
if num_inputs == 1:
input_names = ["data"]
else:
input_names = [f"data{i}" for i in range(num_inputs)]
# FIXME: prevents mxnet from failing with empty saved parameters list
# FIXME: https://github.com/apache/incubator-mxnet/issues/17488
param_file: Optional[str] = str(
model_dir / f"{model_name}-{epoch:04}.params"
)
if not mx.nd.load(param_file):
param_file = None
# FIXME: mx.gluon.SymbolBlock cannot infer float_type and uses default
# np.float32
# FIXME: https://github.com/apache/incubator-mxnet/issues/11849
sb = mx.gluon.SymbolBlock.imports(
symbol_file=str(model_dir / f"{model_name}-symbol.json"),
input_names=input_names,
param_file=param_file,
ctx=mx.current_context(),
)
# FIXME: try to retrieve input/output format
# FIXME: https://github.com/apache/incubator-mxnet/issues/17488
format_json_path = model_dir / f"{model_name}-in_out_format.json"
if format_json_path.exists():
with format_json_path.open("r") as fp:
formats = load_json(fp.read())
sb._in_format = formats["in_format"]
sb._out_format = formats["out_format"]
return sb
def train(arguments):
"""
Generic train method that trains a specified estimator on a specified
dataset.
"""
logger.info("Downloading estimator config.")
estimator_config = Path(arguments.estimator) / "estimator.json"
with estimator_config.open() as config_file:
estimator = serde.load_json(config_file.read())
logger.info("Downloading dataset.")
if arguments.s3_dataset is None:
# load built in dataset
dataset = datasets.get_dataset(arguments.dataset)
else:
# load custom dataset
s3_dataset_dir = Path(arguments.s3_dataset)
dataset = common.load_datasets(
metadata=s3_dataset_dir,
train=s3_dataset_dir / "train",
test=s3_dataset_dir / "test",
)
logger.info("Starting model training.")
predictor = estimator.train(dataset.train)
forecast_it, ts_it = backtest.make_evaluation_predictions(
dataset=dataset.test,
predictor=predictor,
num_samples=int(arguments.num_samples),
)
logger.info("Starting model evaluation.")
evaluator = Evaluator(quantiles=eval(arguments.quantiles))
agg_metrics, item_metrics = evaluator(ts_it,
forecast_it,
num_series=len(list(dataset.test)))
# required for metric tracking.
for name, value in agg_metrics.items():
logger.info(f"gluonts[metric-{name}]: {value}")
# save the evaluation results
metrics_output_dir = Path(arguments.output_data_dir)
with open(metrics_output_dir / "agg_metrics.json", "w") as f:
json.dump(agg_metrics, f)
with open(metrics_output_dir / "item_metrics.csv", "w") as f:
item_metrics.to_csv(f, index=False)
# save the model
model_output_dir = Path(arguments.model_dir)
predictor.serialize(model_output_dir)
def deserialize(cls, path: Path):
try:
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
# deserialize transformation chain
with (path / "input_transform.json").open("r") as fp:
transform = load_json(fp.read())
# deserialize prediction network
num_inputs = len(parameters["input_names"])
prediction_net = import_symb_block(num_inputs, path,
"prediction_net")
return SymbolBlockPredictor(
input_transform=transform,
prediction_net=prediction_net,
**parameters,
)
except Exception as e:
raise IOError(f"Cannot deserialize {fqname_for(cls)}") from e
def deserialize(cls, path: Path):
try:
# deserialize constructor parameters
with (path / 'parameters.json').open('r') as fp:
parameters = load_json(fp.read())
# deserialize transformation chain
with (path / 'input_transform.json').open('r') as fp:
transform = load_json(fp.read())
# deserialize prediction network
prediction_net = import_repr_block(path, 'prediction_net')
# input_names is derived from the prediction_net
if 'input_names' in parameters:
del parameters['input_names']
return RepresentableBlockPredictor(
input_transform=transform,
prediction_net=prediction_net,
**parameters,
)
except Exception as e:
raise IOError(f'Cannot deserialize {fqname_for(cls)}') from e
def deserialize(
cls, path: Path, ctx: Optional[mx.Context] = None
) -> "DeepRenewalProcessPredictor":
repr_predictor = super().deserialize(path, ctx)
ctx = repr_predictor.ctx
with mx.Context(ctx):
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
parameters["ctx"] = ctx
return DeepRenewalProcessPredictor(
input_transform=repr_predictor.input_transform,
prediction_net=repr_predictor.prediction_net,
**parameters,
)
def deserialize(cls,
path: Path,
ctx: Optional[mx.Context] = None,
**kwargs) -> "NBEATSEnsemblePredictor":
"""
Load a serialized NBEATSEnsemblePredictor from the given path.
Parameters
----------
path
Path to the serialized files predictor.
ctx
Optional mxnet context parameter to be used with the predictor.
If nothing is passed will use the GPU if available and CPU
otherwise.
"""
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
# basically save each predictor in its own sub-folder
num_predictors = parameters["num_predictors"]
num_digits = len(str(num_predictors))
predictors = []
# load all the predictors individually and also make sure not to load
# anything else by mistake
predictor_locations = [
f"predictor_{str(index).zfill(num_digits)}"
for index in range(num_predictors)
]
# deserialize predictors
for sub_dir in predictor_locations:
predictors.append(
RepresentableBlockPredictor.deserialize(path / sub_dir, ctx))
return NBEATSEnsemblePredictor(
prediction_length=parameters["prediction_length"],
freq=parameters["freq"],
predictors=predictors,
aggregation_method=parameters["aggregation_method"],
)
def deserialize(
cls,
path: Path,
# TODO this is temporary, we should make the callable object serializable in the first place
scaling: Callable[[pd.Series], Tuple[pd.Series,
float]] = mean_abs_scaling,
**kwargs,
) -> "Predictor":
# deserialize constructor parameters
with (path / "parameters.json").open("r") as fp:
parameters = load_json(fp.read())
loaded_ag_path = parameters["ag_path"]
del parameters["ag_path"]
# load tabular model
ag_model = AutogluonTabularPredictor.load(loaded_ag_path)
return TabularPredictor(ag_model=ag_model,
scaling=scaling,
**parameters)
def decode_sagemaker_parameter(value: str) -> Union[list, dict, str]:
"""
All values passed through the SageMaker API are encoded as strings. Thus
we pro-actively decode values that seem like arrays or dicts.
Integer values (e.g. `"1"`) are handled by pydantic models further down
the pipeline.
"""
value = value.strip()
# TODO: is this the right way to do things?
# what about fields which start which match the pattern for
# some reason?
is_list = value.startswith("[") and value.endswith("]")
is_dict = value.startswith("{") and value.endswith("}")
if is_list or is_dict:
return load_json(value)
else:
return value
def test_json_serialization(e) -> None:
assert e == serde.load_json(serde.dump_json(e))
def test_json_serialization(e) -> None:
assert equals(e, serde.load_json(serde.dump_json(e)))
def deserialize(
cls,
path: Path,
ctx: Optional[mx.Context] = None) -> "RepresentablePredictor":
with (path / "predictor.json").open("r") as fp:
return load_json(fp.read())
def deserialize(cls, path: Path):
try:
with (path / "predictor.json").open("r") as fp:
return load_json(fp.read())
except Exception as e:
raise IOError(f"Cannot deserialize {fqname_for(cls)}") from e
from gluonts.model.common import Tensor, NPArrayLike
from gluonts.mx.distribution.distribution import Distribution
from gluonts.mx.distribution import (
Gaussian,
StudentT,
MixtureDistribution,
GaussianOutput,
StudentTOutput,
LaplaceOutput,
MultivariateGaussianOutput,
MixtureDistributionOutput,
)
from gluonts.testutil import empirical_cdf
from gluonts.core.serde import dump_json, load_json
serialize_fn_list = [lambda x: x, lambda x: load_json(dump_json(x))]
def plot_samples(s: Tensor, bins: int = 100) -> None:
from matplotlib import pyplot as plt
s = s.asnumpy()
plt.hist(s, bins=bins)
plt.show()
BINS = np.linspace(-5, 5, 100)
def histogram(samples: NPArrayLike) -> np.ndarray:
h, _ = np.histogram(samples, bins=BINS, density=True)
def test_json_serialization(e) -> None:
expected, actual = e, serde.load_json(serde.dump_json(e))
assert check_equality(expected, actual)
@pytest.mark.parametrize(
"a",
[
mx.nd.random.uniform(shape=(3, 5, 2), dtype="float16"),
mx.nd.random.uniform(shape=(3, 5, 2), dtype="float32"),
mx.nd.random.uniform(shape=(3, 5, 2), dtype="float64"),
mx.nd.array([[1, 2, 3], [-1, -2, 0]], dtype=np.uint8),
mx.nd.array([[1, 2, 3], [-1, -2, 0]], dtype=np.int32),
mx.nd.array([[1, 2, 3], [-1, -2, 0]], dtype=np.int64),
mx.nd.array([[1, 2, 3], [1, 2, 0]], dtype=np.uint8),
],
)
@pytest.mark.parametrize(
"serialize_fn",
[
lambda x: serde.load_json(serde.dump_json(x)),
lambda x: serde.load_binary(serde.dump_binary(x)),
lambda x: serde.load_code(serde.dump_code(x)),
],
)
def test_ndarray_serialization(a, serialize_fn) -> None:
b = serialize_fn(a)
assert type(a) == type(b)
assert a.dtype == b.dtype
assert a.shape == b.shape
assert np.all((a == b).asnumpy())
def test_timestamp_encode_decode() -> None:
now = pd.Timestamp.now()
assert now == serde.decode(serde.encode(now))
def deserialize(cls, path: Path) -> "RepresentablePredictor":
with (path / "predictor.json").open("r") as fp:
return load_json(fp.read())
