def test_from_glycoct(self):
s = self.glycan.root.to_glycoct()
b = StringIO(s)
g = iter(glycoct.read(b)).next()
self.assertEqual(g.root.to_glycoct(), s)
def test_parse_file(self):
for g in glycoct.read(self._file_path):
self.assertTrue(isinstance(g, glycan.Glycan))
def prepare_file(file_path):
key = int(os.path.splitext(os.path.basename(file_path))[0])
glycan = glycoct.read(file_path).next()
composition = Counter(map(identity.identify, glycan))
return key, {"key": key, "composition": composition, "glycan": glycan}
def test_from_glycoct(self):
s = self.glycan.root.serialize('glycoct')
b = StringIO(s)
g = next(iter(glycoct.read(b)))
self.assertEqual(g.root.serialize('glycoct'), s)