def preProcFilesExist(cls, genome, trackName, allowOverlaps):
collector = PreProcMetaDataCollector(genome, trackName)
preProcFilesExist = collector.preProcFilesExist(allowOverlaps)
if preProcFilesExist is None:
merged = cls.mergedPreProcFilesExist(genome, trackName,
allowOverlaps)
if merged:
preProcFilesExist = True
else:
preProcFilesExist = cls.oldTypePreProcFilesExist(
genome, trackName, allowOverlaps)
collector.updatePreProcFilesExistFlag(allowOverlaps,
preProcFilesExist, merged)
return preProcFilesExist
def preProcFilesExist(genome, trackName, allowOverlaps):
collector = PreProcMetaDataCollector(genome, trackName)
preProcFilesExist = collector.preProcFilesExist(allowOverlaps)
if preProcFilesExist is None:
dirPath = createDirPath(trackName, genome, allowOverlaps=allowOverlaps)
if BoundingRegionShelve(genome, trackName, allowOverlaps).fileExists():
preProcFilesExist = True
# any( fn.split('.')[0] in ['start', 'end', 'val', 'edges'] \
# for fn in os.listdir(dirPath) if os.path.isfile(os.path.join(dirPath, fn)) )
else:
if os.path.exists(dirPath):
preProcFilesExist = PreProcessUtils._hasOldTypeChromSubDirs(dirPath, genome)
else:
preProcFilesExist = False
collector.updatePreProcFilesExistFlag(allowOverlaps, preProcFilesExist)
return preProcFilesExist