def iteqclass(H, verbose=True, capsize=100):
'''
Find all graphs in the same equivalence class with respect to
graph H and any undesampling rate.
'''
if cmp.isSclique(H):
print 'not running on superclique'
return None
g = {n: {} for n in H}
s = set()
Hnum = bfu.ug2num(H)
if Hnum[1] == 0: s.add(Hnum[0])
cp = confpairs(H)
ccf = conflictors(H)
edges = gk.edgelist(gk.complement(g))
ds = {bfu.g2num(g): edges}
if verbose: print '%3s' % 'i' + '%10s' % ' graphs'
for i in range(len(H)**2):
ds, ss = add2set_(ds,
H,
cp,
ccf,
iter=i,
verbose=verbose,
capsize=capsize)
s = s | ss
if capsize <= len(ss): break
if not ds: break
return s
def dpc(data, pval=0.05):
n = data.shape[0]
# stack the data: first n rows is t-1 slice, the next n are slice t
data = np.asarray(np.r_[data[:,:-1],data[:,1:]])
def tetrad_cind_(y,x,condset=[], alpha=0.01, shift=0):
y = data[n+int(y)-1,:]
x = data[shift+int(x)-1,:]
if condset:
X = data[condset,:]
ry, rx = residuals_(y,x,X)
else:
ry, rx = [y,x]
return independent_(ry, rx, alpha = alpha)
def cind_(y,x, condset=[], pval=pval, shift=0):
yd = data[n+int(y)-1,:].T
X = data[[shift+int(x)-1]+condset,:].T
return independent(yd, X, pval=pval)
def cindependent(y, x, counter, parents=[], pval=pval):
for S in [j for j in iter.combinations(parents,counter)]:
if cind_(y, x, condset=list(S), pval=pval): return True
#if tetrad_cind_(x, y, condset=list(S), alpha=pval): return True
return False
def bindependent(y, x, parents=[], pval=pval):
return cind_(y, x, condset=parents, pval=pval, shift=n)
#return tetrad_cind_(y, x, condset=parents, alpha=pval, shift=n)
def prune(elist, mask, g):
for e in mask:
g[e[0]][e[1]].remove((0,1))
elist.remove(e)
gk.clean_leaf_nodes(g)
g = gk.superclique(n)
gtr= bfu.gtranspose(g)
el = gk.edgelist(g)
for counter in range(n):
to_remove = []
for e in el:
ppp = [int(k)-1 for k in gtr[e[1]] if k != e[0]]
if counter <= len(ppp):
if cindependent(e[1], e[0], counter, parents=ppp, pval=pval):
to_remove.append(e)
gtr[e[1]].pop(e[0],None)
prune(el, to_remove, g)
bel = [map(lambda k: str(k+1), x) for x in iter.combinations(range(n),2)]
for e in bel:
ppp = list(set(gtr[e[0]].keys()) | set(gtr[e[1]].keys()))
ppp = map(lambda x: int(x)-1, ppp)
if bindependent(e[0], e[1], parents=ppp, pval=pval):
g[e[0]][e[1]].remove((2,0))
g[e[1]][e[0]].remove((2,0))
gk.clean_leaf_nodes(g)
return g
def iteqclass(H, verbose=True, capsize=100):
'''
Find all graphs in the same equivalence class with respect to
graph H and any undesampling rate.
'''
if cmp.isSclique(H):
print 'not running on superclique'
return None
g = {n:{} for n in H}
s = set()
Hnum = bfu.ug2num(H)
if Hnum[1]==0: s.add(Hnum[0])
cp = confpairs(H)
ccf = conflictors(H)
edges = gk.edgelist(gk.complement(g))
ds = {bfu.g2num(g): edges}
if verbose: print '%3s'%'i'+'%10s'%' graphs'
for i in range(len(H)**2):
ds, ss = add2set_(ds, H, cp, ccf, iter=i,
verbose=verbose,
capsize=capsize)
s = s | ss
if capsize <= len(ss): break
if not ds: break
return s
def estOE(d):
gt= d['gt']['graph']
gt=bfu.undersample(gt,1)
e = gk.OCE(d['estimate'],gt)
N = np.double(len(gk.edgelist(gt))) +\
np.double(len(gk.bedgelist(gt)))
return (e['directed'][0]+e['bidirected'][0])/N
def eqsearch(g2, rate=1):
'''Find all g that are also in the equivalence
class with respect to g2 and the rate.
'''
s = set()
noop = set()
@memo1
def addnodes(g, g2, edges):
if edges:
masks = []
for e in edges:
if ok2addanedge_(e[0], e[1], g, g2, rate=rate):
masks.append(True)
else:
masks.append(False)
nedges = [edges[i] for i in range(len(edges)) if masks[i]]
n = len(nedges)
if n:
for i in range(n):
mask = addanedge(g, nedges[i])
if bfu.undersample(g, rate) == g2: s.add(bfu.g2num(g))
addnodes(g, g2, nedges[:i] + nedges[i + 1:])
delanedge(g, nedges[i], mask)
return s
else:
return noop
else:
return noop
g = cloneempty(g2)
edges = gk.edgelist(gk.complement(g))
addnodes(g, g2, edges)
return s
def estOE(d):
gt = d['gt']['graph']
gt = bfu.undersample(gt, 1)
e = gk.OCE(d['estimate'], gt)
N = np.double(len(gk.edgelist(gt))) +\
np.double(len(gk.bedgelist(gt)))
return (e['directed'][0] + e['bidirected'][0]) / N
def supergraphs_in_eq(g, g2, rate=1):
'''Find all supergraphs of g that are also in the same equivalence
class with respect to g2 and the rate.
Currently works only for bfu.undersample by 1
'''
if bfu.undersample(g,rate) != g2:
raise ValueError('g is not in equivalence class of g2')
s = set()
def addnodes(g,g2,edges):
if edges:
masks = []
for e in edges:
if ok2addanedge(e[0],e[1],g,g2,rate=rate):
masks.append(True)
else:
masks.append(False)
nedges = [edges[i] for i in range(len(edges)) if masks[i]]
n = len(nedges)
if n:
for i in range(n):
mask = addanedge(g,nedges[i])
s.add(bfu.g2num(g))
addnodes(g,g2,nedges[:i]+nedges[i+1:])
delanedge(g,nedges[i],mask)
edges = gk.edgelist(gk.complement(g))
addnodes(g,g2,edges)
return s
def eqclass(H):
'''
Find all graphs in the same equivalence class with respect to
graph H and any undesampling rate.
'''
g = {n:{} for n in H}
s = set()
@memo
def addedges(g,H,edges):
if edges:
nedges = prune_conflicts(H, g, edges)
n = len(nedges)
if n == 0: return None
for i in range(n):
gk.addanedge(g,nedges[i])
if bfu.call_u_equals(g, H): s.add(bfu.g2num(g))
addedges(g,H,nedges[:i]+nedges[i+1:])
gk.delanedge(g,nedges[i])
edges = gk.edgelist(gk.complement(g))
addedges(g,H,edges)
return s-set([None])
def eqclass(H):
'''
Find all graphs in the same equivalence class with respect to
graph H and any undesampling rate.
'''
g = {n: {} for n in H}
s = set()
@memo
def addedges(g, H, edges):
if edges:
nedges = prune_conflicts(H, g, edges)
n = len(nedges)
if n == 0: return None
for i in range(n):
gk.addanedge(g, nedges[i])
if bfu.call_u_equals(g, H): s.add(bfu.g2num(g))
s.add(addedges(g, H, nedges[:i] + nedges[i + 1:]))
gk.delanedge(g, nedges[i])
edges = gk.edgelist(gk.complement(g))
addedges(g, H, edges)
return s - set([None])
def estCOE(d):
gt = d['gt']['graph']
gt = bfu.undersample(gt, 1)
e = gk.OCE(d['estimate'], gt)
n = len(gt)
N = np.double(n**2+(n-1)**2/2.0\
-len(gk.edgelist(gt))
-len(gk.bedgelist(gt)))
return (e['directed'][1] + e['bidirected'][1]) / N
def estCOE(d):
gt= d['gt']['graph']
gt=bfu.undersample(gt,1)
e = gk.OCE(d['estimate'],gt)
n = len(gt)
N = np.double(n**2+(n-1)**2/2.0\
-len(gk.edgelist(gt))
-len(gk.bedgelist(gt)))
return (e['directed'][1]+e['bidirected'][1])/N
def prune(g):
numh = bfu.g2num(g)
cannotprune = True
for l in gk.edgelist(gk.digonly(g)):
gk.delanedge(g,l)
if bfu.forms_loop(g, loop):
cannotprune = False
prune(g)
gk.addanedge(g,l)
if cannotprune: s.add(bfu.g2num(g))
def checker(n,ee):
g = bfu.ringmore(n,ee)
g2 = bfu.increment(g)
d = checkable(g2)
t = [len(d[x]) for x in d]
r = []
n = len(g2)
ee= len(gk.edgelist(g2))
for i in range(1,len(t)):
r.append(sum(np.log10(t[:i])) - ee*np.log10(n))
return r
def g22g1(g2, capsize=None):
'''
computes all g1 that are in the equivalence class for g2
'''
if ecj.isSclique(g2):
print 'Superclique - any SCC with GCD = 1 fits'
return set([-1])
single_cache = {}
@memo # memoize the search
def nodesearch(g, g2, edges, s):
if edges:
if bfu.increment(g) == g2:
s.add(bfu.g2num(g))
if capsize and len(s)>capsize:
raise ValueError('Too many elements')
return g
e = edges[0]
for n in g2:
if (n,e) in single_cache: continue
if not edge_increment_ok(e[0],n,e[1],g,g2): continue
mask = add2edges(g,e,n)
r = nodesearch(g,g2,edges[1:],s)
del2edges(g,e,n,mask)
elif bfu.increment(g)==g2:
s.add(bfu.g2num(g))
if capsize and len(s)>capsize:
raise ValueError('Too many elements in eqclass')
return g
# find all directed g1's not conflicting with g2
n = len(g2)
edges = gk.edgelist(g2)
random.shuffle(edges)
g = cloneempty(g2)
for e in edges:
for n in g2:
mask = add2edges(g,e,n)
if not isedgesubset(bfu.increment(g), g2):
single_cache[(n,e)] = False
del2edges(g,e,n,mask)
s = set()
try:
nodesearch(g,g2,edges,s)
except ValueError:
s.add(0)
return s
def checkerDS(n,ee):
g = bfu.ringmore(n,ee)
g2 = bfu.increment(g)
gg = checkable(g2)
d,p,idx = conformanceDS(g2,gg,gg.keys())
t = [len(x) for x in p]
r = []
n = len(g2)
ee= len(gk.edgelist(g2))
for i in range(1,len(t)):
r.append(sum(np.log10(t[:i])) - ee*np.log10(n))
return r
def edge_backtrack2g1_directed(g2, capsize=None):
'''
computes all g1 that are in the equivalence class for g2
'''
if ecj.isSclique(g2):
print 'Superclique - any SCC with GCD = 1 fits'
return set([-1])
single_cache = {}
def edgeset(g):
return set(gk.edgelist(g))
@memo # memoize the search
def nodesearch(g, g2, edges, s):
if edges:
e = edges.pop()
ln = [n for n in g2]
for n in ln:
if (n, e) in single_cache: continue
mask = add2edges(g, e, n)
if isedgesubsetD(bfu.increment(g), g2):
r = nodesearch(g, g2, edges, s)
if r and edgeset(bfu.increment(r)) == edgeset(g2):
s.add(bfu.g2num(r))
if capsize and len(s) > capsize:
raise ValueError('Too many elements in eqclass')
del2edges(g, e, n, mask)
edges.append(e)
else:
return g
# find all directed g1's not conflicting with g2
n = len(g2)
edges = gk.edgelist(g2)
random.shuffle(edges)
g = cloneempty(g2)
for e in edges:
for n in g2:
mask = add2edges(g, e, n)
if not isedgesubsetD(bfu.increment(g), g2):
single_cache[(n, e)] = False
del2edges(g, e, n, mask)
s = set()
try:
nodesearch(g, g2, edges, s)
except ValueError:
s.add(0)
return s
def edge_backtrack2g1_directed(g2, capsize=None):
'''
computes all g1 that are in the equivalence class for g2
'''
if ecj.isSclique(g2):
print 'Superclique - any SCC with GCD = 1 fits'
return set([-1])
single_cache = {}
def edgeset(g):
return set(gk.edgelist(g))
@memo # memoize the search
def nodesearch(g, g2, edges, s):
if edges:
e = edges.pop()
ln = [n for n in g2]
for n in ln:
if (n,e) in single_cache: continue
mask = add2edges(g,e,n)
if isedgesubsetD(bfu.increment(g), g2):
r = nodesearch(g,g2,edges,s)
if r and edgeset(bfu.increment(r))==edgeset(g2):
s.add(bfu.g2num(r))
if capsize and len(s)>capsize:
raise ValueError('Too many elements in eqclass')
del2edges(g,e,n,mask)
edges.append(e)
else:
return g
# find all directed g1's not conflicting with g2
n = len(g2)
edges = gk.edgelist(g2)
random.shuffle(edges)
g = cloneempty(g2)
for e in edges:
for n in g2:
mask = add2edges(g,e,n)
if not isedgesubsetD(bfu.increment(g), g2):
single_cache[(n,e)] = False
del2edges(g,e,n,mask)
s = set()
try:
nodesearch(g,g2,edges,s)
except ValueError:
s.add(0)
return s
def dceqclass2(H):
"""Find all graphs in the same equivalence class with respect to H
Arguments:
- `H`: an undersampled graph
"""
if cmp.isSclique(H):
print 'not running on superclique'
return set()
n = len(H)
s = set()
cp = confpairs(H)
confs = conflictor_set(H)
ccf = conflictors(H)
def prune_loops(gl, H):
l = []
for e in gl:
if e[0] == e[1] and not (e[1] in H[e[0]] and
(1, 0) in H[e[0]][e[1]]):
continue
l.append(e)
return l
edges = gk.edgelist(gk.complement(bfu.num2CG(0, n)))
edges = prune_loops(edges, H)
glist = map(lambda x: e2num(x, n), edges)
#glist = list(2**np.arange(n**2))
i = 0
while glist != []:
print 2**i, len(glist)
glist_prev = glist
glist, ss = quadmerge21(glist, H, confs)
s = s | ss
i += 1
ds = {x: edges for x in glist_prev}
for j in range(i, len(H)**2):
ds, ss = add2set_(ds, H, cp, ccf, iter=j, verbose=True)
s = s | ss
if not ds: break
return s
def confpairs(H):
n = len(H)
g = {n: {} for n in H}
d = {}
edges = gk.edgelist(gk.complement(g))
edges = prune_conflicts(H, g, edges)
for p in combinations(edges, 2):
gk.addedges(g, p)
if bfu.call_u_conflicts(g, H):
n1 = e2num(p[0], n)
n2 = e2num(p[1], n)
d.setdefault(n1, set()).add(n2)
d.setdefault(n2, set()).add(n1)
gk.deledges(g, p)
return d
def confpairs(H):
n = len(H)
g = {n:{} for n in H}
d = {}
edges = gk.edgelist(gk.complement(g))
edges = prune_conflicts(H, g, edges)
for p in combinations(edges,2):
gk.addedges(g,p)
if bfu.call_u_conflicts(g, H):
n1 = e2num(p[0],n)
n2 = e2num(p[1],n)
d.setdefault(n1,set()).add(n2)
d.setdefault(n2,set()).add(n1)
gk.deledges(g,p)
return d
def eqclass_list(H):
'''
Find all graphs in the same equivalence class with respect to
graph H and any undesampling rate.
'''
g = {n: {} for n in H}
s = set()
edges = gk.edgelist(gk.complement(g))
#edges = prune_conflicts(H, g, edges)
gset = set([bfu.g2num(g)])
for i in range(len(H)**2):
print i
gset, ss, edges = add2set(gset, edges, H)
s = s | ss
if not edges: break
return s
def eqclass_list(H):
'''
Find all graphs in the same equivalence class with respect to
graph H and any undesampling rate.
'''
g = {n:{} for n in H}
s = set()
edges = gk.edgelist(gk.complement(g))
#edges = prune_conflicts(H, g, edges)
gset = set([bfu.g2num(g)])
for i in range(len(H)**2):
print i
gset, ss, edges = add2set(gset, edges, H)
s = s | ss
if not edges: break
return s
def dceqclass2(H):
"""Find all graphs in the same equivalence class with respect to H
Arguments:
- `H`: an undersampled graph
"""
if cmp.isSclique(H):
print 'not running on superclique'
return set()
n = len(H)
s = set()
cp = confpairs(H)
confs = conflictor_set(H)
ccf = conflictors(H)
def prune_loops(gl, H):
l = []
for e in gl:
if e[0] == e[1] and not (e[1] in H[e[0]] and (1,0) in H[e[0]][e[1]]): continue
l.append(e)
return l
edges = gk.edgelist(gk.complement(bfu.num2CG(0,n)))
edges = prune_loops(edges, H)
glist = map(lambda x: e2num(x,n),edges)
#glist = list(2**np.arange(n**2))
i = 0
while glist != []:
print 2**i, len(glist)
glist_prev = glist
glist, ss = quadmerge21(glist, H, confs)
s = s|ss
i += 1
ds = {x: edges for x in glist_prev}
for j in range(i, len(H)**2):
ds, ss = add2set_(ds, H, cp, ccf, iter=j, verbose=True)
s = s | ss
if not ds: break
return s
def vedgelist(g, pathtoo=False):
""" Return a list of tuples for edges of g and forks
a superugly organically grown function that badly needs refactoring
"""
l = []
el = gk.edgelist(g)
bl = gk.bedgelist(g)
if pathtoo: l.extend(make_longpaths(g,el))
l2,r = make_allforks_and_rest(g,el,bl,dofullforks=True)
l.extend(l2)
A, singles = makechains(r)
if singles:
B, singles = makesinks(singles)
else:
B, singles = [], []
l = longpaths_pick(l)+threedges_pick(l) + A + B + singles
return l
def eqsearch(g2, rate=1):
'''Find all g that are also in the equivalence
class with respect to g2 and the rate.
'''
s = set()
noop = set()
@memo1
def addnodes(g,g2,edges):
if edges:
masks = []
for e in edges:
if ok2addanedge_(e[0],e[1],g,g2,rate=rate):
masks.append(True)
else:
masks.append(False)
nedges = [edges[i] for i in range(len(edges)) if masks[i]]
n = len(nedges)
if n:
for i in range(n):
mask = addanedge(g,nedges[i])
if bfu.undersample(g,rate) == g2: s.add(bfu.g2num(g))
addnodes(g,g2,nedges[:i]+nedges[i+1:])
delanedge(g,nedges[i],mask)
return s
else:
return noop
else:
return noop
g = cloneempty(g2)
edges = gk.edgelist(gk.complement(g))
addnodes(g,g2,edges)
return s
def backtrack_more(g2, rate=1, capsize=None):
'''
computes all g1 that are in the equivalence class for g2
'''
if ecj.isSclique(g2):
print 'Superclique - any SCC with GCD = 1 fits'
return set([-1])
single_cache = {}
if rate == 1:
ln = [n for n in g2]
else:
ln = []
for x in itertools.combinations_with_replacement(g2.keys(),rate):
ln.extend(itertools.permutations(x,rate))
ln = set(ln)
@memo # memoize the search
def nodesearch(g, g2, edges, s):
if edges:
if bfu.undersample(g,rate) == g2:
s.add(bfu.g2num(g))
if capsize and len(s)>capsize:
raise ValueError('Too many elements')
return g
e = edges[0]
for n in ln:
if (n,e) in single_cache: continue
if not ok2addaVpath(e, n, g, g2, rate=rate): continue
mask = addaVpath(g,e,n)
r = nodesearch(g,g2,edges[1:],s)
delaVpath(g,e,n,mask)
elif bfu.undersample(g,rate)==g2:
s.add(bfu.g2num(g))
if capsize and len(s)>capsize:
raise ValueError('Too many elements in eqclass')
return g
# find all directed g1's not conflicting with g2
n = len(g2)
edges = gk.edgelist(g2)
random.shuffle(edges)
g = cloneempty(g2)
for e in edges:
for n in ln:
mask = addaVpath(g,e,n)
if not isedgesubset(bfu.undersample(g,rate), g2):
single_cache[(n,e)] = False
delaVpath(g,e,n,mask)
s = set()
try:
nodesearch(g,g2,edges,s)
except ValueError:
s.add(0)
return s
def edgeset(g):
return set(gk.edgelist(g))
def density(g):
return len(gk.edgelist(g)) / np.double(len(g)**2)
def dpc(data, pval=0.05):
n = data.shape[0]
# stack the data: first n rows is t-1 slice, the next n are slice t
data = np.asarray(np.r_[data[:, :-1], data[:, 1:]])
def tetrad_cind_(y, x, condset=[], alpha=0.01, shift=0):
y = data[n + int(y) - 1, :]
x = data[shift + int(x) - 1, :]
if condset:
X = data[condset, :]
ry, rx = residuals_(y, x, X)
else:
ry, rx = [y, x]
return independent_(ry, rx, alpha=alpha)
def cind_(y, x, condset=[], pval=pval, shift=0):
yd = data[n + int(y) - 1, :].T
X = data[[shift + int(x) - 1] + condset, :].T
return independent(yd, X, pval=pval)
def cindependent(y, x, counter, parents=[], pval=pval):
for S in [j for j in iter.combinations(parents, counter)]:
if cind_(y, x, condset=list(S), pval=pval): return True
#if tetrad_cind_(x, y, condset=list(S), alpha=pval): return True
return False
def bindependent(y, x, parents=[], pval=pval):
return cind_(y, x, condset=parents, pval=pval, shift=n)
#return tetrad_cind_(y, x, condset=parents, alpha=pval, shift=n)
def prune(elist, mask, g):
for e in mask:
g[e[0]][e[1]].remove((0, 1))
elist.remove(e)
gk.clean_leaf_nodes(g)
g = gk.superclique(n)
gtr = bfu.gtranspose(g)
el = gk.edgelist(g)
for counter in range(n):
to_remove = []
for e in el:
ppp = [int(k) - 1 for k in gtr[e[1]] if k != e[0]]
if counter <= len(ppp):
if cindependent(e[1], e[0], counter, parents=ppp, pval=pval):
to_remove.append(e)
gtr[e[1]].pop(e[0], None)
prune(el, to_remove, g)
bel = [
map(lambda k: str(k + 1), x) for x in iter.combinations(range(n), 2)
]
for e in bel:
ppp = list(set(gtr[e[0]].keys()) | set(gtr[e[1]].keys()))
ppp = map(lambda x: int(x) - 1, ppp)
if bindependent(e[0], e[1], parents=ppp, pval=pval):
g[e[0]][e[1]].remove((2, 0))
g[e[1]][e[0]].remove((2, 0))
gk.clean_leaf_nodes(g)
return g
def udensity(g): return (len(gk.edgelist(g))+len(gk.bedgelist(g))/2.)/np.double(len(g)**2 + len(g)*(len(g)-1)/2.) def esig(l,n):
def density(g): return len(gk.edgelist(g))/np.double(len(g)**2) def esig(l,n):
def printedges(g):
l = gk.edgelist(g)
for e in l:
print e[0] - 1, '->', e[1] - 1
def checkcedge(c, g2):
""" Nodes to check to merge the virtual nodes of c ( a->b->c )
"""
l = gk.edgelist(g2)
return list(set(l))
def backtrack_more2(g2, rate=2, capsize=None):
'''
computes all g1 that are in the equivalence class for g2
'''
if ecj.isSclique(g2):
print 'Superclique - any SCC with GCD = 1 fits'
return set([-1])
f = [(addaVpath,delaVpath,maskaVpath)]
c = [ok2addaVpath]
def predictive_check(g,g2,pool,checks_ok, key):
s = set()
for u in pool:
if not checks_ok(key,u,g,g2,rate=rate): continue
s.add(u)
return s
@memo2 # memoize the search
def nodesearch(g, g2, order, inlist, s, cds, pool, pc):
if order:
if bfu.undersample(g,rate) == g2:
s.add(bfu.g2num(g))
if capsize and len(s)>capsize:
raise ValueError('Too many elements')
s.update(supergraphs_in_eq(g, g2, rate=rate))
return g
key = order[0]
if pc:
tocheck = [x for x in pc if x in cds[len(inlist)-1][inlist[0]]]
else:
tocheck = cds[len(inlist)-1][inlist[0]]
if len(order) > 1:
kk = order[1]
pc = predictive_check(g,g2,pool[len(inlist)],
c[edge_function_idx(kk)],kk)
else:
pc = set()
adder, remover, masker = f[edge_function_idx(key)]
checks_ok = c[edge_function_idx(key)]
for n in tocheck:
if not checks_ok(key,n,g,g2,rate=rate): continue
masked = np.prod(masker(g,key,n))
if masked:
nodesearch(g,g2,order[1:], [n]+inlist, s, cds, pool, pc)
else:
mask = adder(g,key,n)
nodesearch(g,g2,order[1:], [n]+inlist, s, cds, pool, pc)
remover(g,key,n,mask)
elif bfu.undersample(g,rate)==g2:
s.add(bfu.g2num(g))
if capsize and len(s)>capsize:
raise ValueError('Too many elements')
return g
# find all directed g1's not conflicting with g2
startTime = int(round(time.time() * 1000))
ln = [x for x in itertools.permutations(g2.keys(),rate)] + \
[(n,n) for n in g2]
gg = {x:ln for x in gk.edgelist(g2)}
keys = gg.keys()
cds, order, idx = conformanceDS(g2, gg, gg.keys(), f=f, c=c)
endTime = int(round(time.time() * 1000))
print "precomputed in {:10} seconds".format(round((endTime-startTime)/1000.,3))
if 0 in [len(x) for x in order]:
return set()
g = cloneempty(g2)
s = set()
try:
nodesearch(g, g2, [keys[i] for i in idx], ['0'], s, cds, order, set())
except ValueError, e:
print e
s.add(0)
