def test_variable_length_barcodes(self):
"""
Test hamming distance with hamming of 0 and 1
:return:
"""
barcodes = ['GTTG', 'AAAAA']
seq_1 = "ATTGTTGTATTTCATTCTGCCCAGAGCAAAATACATGTGACAAAA\n"
barcode = read_has_barcode(barcodes, seq_1, max_hamming_distance=1)
self.assertEqual(barcode, barcodes[0])
seq_1 = "AAAAATGTATTTCATTCTGCCCAGAGCAAAATACATGTGACAAAA\n"
barcode = read_has_barcode(barcodes, seq_1, max_hamming_distance=1)
self.assertEqual(barcode, barcodes[1])
def test_variable_length_barcodes(self):
"""
Test hamming distance with hamming of 0 and 1
:return:
"""
barcodes = ['GTTG', 'AAAAA']
seq_1 = "ATTGTTGTATTTCATTCTGCCCAGAGCAAAATACATGTGACAAAA\n"
barcode = read_has_barcode(barcodes, seq_1, max_hamming_distance=1)
self.assertEqual(barcode, barcodes[0])
seq_1 = "AAAAATGTATTTCATTCTGCCCAGAGCAAAATACATGTGACAAAA\n"
barcode = read_has_barcode(barcodes, seq_1, max_hamming_distance=1)
self.assertEqual(barcode, barcodes[1])
def test_read_has_barcode(self):
"""
Test hamming distance with hamming of 0
:return:
"""
barcodes = ['GTTG', 'AAAA']
seq_1 = "GTTGTTGTATTTCATTCTGCCCAGAGCAAAATACATGTGACAAAA\n"
barcode = read_has_barcode(barcodes, seq_1)
self.assertEqual(barcode, barcodes[0])
def test_read_has_barcode(self):
"""
Test hamming distance with hamming of 0
:return:
"""
barcodes = ['GTTG', 'AAAA']
seq_1 = "GTTGTTGTATTTCATTCTGCCCAGAGCAAAATACATGTGACAAAA\n"
barcode = read_has_barcode(barcodes, seq_1)
self.assertEqual(barcode, barcodes[0])
