def load_delay(self, event, vc=False):
"""The variable delay list loading GUI element.
@param event: The wx event.
@type event: wx event
"""
# VD
# VC time is not a number
if vc:
try:
vc_factor = float(self.vc_time.GetValue())
except:
error_message('VC time is not a number.')
return
# VD
else:
vc_factor = 1
# The dialog.
dialog = RelaxFileDialog(parent=self, style=wx.FD_OPEN)
# Show the dialog and catch if no file has been selected.
if status.show_gui and dialog.ShowModal() != wx.ID_OK:
# Don't do anything.
return
# The files.
filename = dialog.get_file()
# Open the file
file = open(filename, 'r')
# Read entries
index = 0
for line in file:
# Evaluate if line is a number
try:
t = float(line.replace('/n', ''))
except:
continue
# Write delay to peak list grid
self.grid.SetCellValue(index, 1, str(t*vc_factor))
# Next peak list
index = index + 1
# Too many entries in VD list
if index == self.num_rows:
error_message('Too many entries in list.')
return
def load_delay(self, event, vc=False):
"""The variable delay list loading GUI element.
@param event: The wx event.
@type event: wx event
"""
# VD
# VC time is not a number
if vc:
try:
vc_factor = float(self.vc_time.GetValue())
except:
error_message('VC time is not a number.')
return
# VD
else:
vc_factor = 1
# The dialog.
dialog = RelaxFileDialog(parent=self, style=wx.FD_OPEN)
# Show the dialog and catch if no file has been selected.
if status.show_gui and dialog.ShowModal() != wx.ID_OK:
# Don't do anything.
return
# The files.
filename = dialog.get_file()
# Open the file
file = open(filename, 'r')
# Read entries
index = 0
for line in file:
# Evaluate if line is a number
try:
t = float(line.replace('/n', ''))
except:
continue
# Write delay to peak list grid
self.grid.SetCellValue(index, 1, str(t*vc_factor))
# Next peak list
index = index + 1
# Too many entries in VD list
if index == self.num_rows:
error_message('Too many entries in list.')
return
def execute(self, event):
"""Set up, execute, and process the automatic Rx analysis.
@param event: The wx event.
@type event: wx event
"""
# Flush the GUI interpreter internal queue to make sure all user functions are complete.
self.gui.interpreter.flush()
# relax execution lock.
if status.exec_lock.locked():
error_message("relax is currently executing.",
"relax execution lock")
event.Skip()
return
# User warning to close windows.
self.gui.close_windows()
# Synchronise the frame data to the relax data store.
self.sync_ds(upload=True)
# Assemble all the data needed for the auto-analysis.
data, missing, model_mismatch = self.assemble_data()
# Missing data.
if len(missing):
self.missing_data = Missing_data(missing)
return
# Model mismatch.
if len(model_mismatch):
# Generate the text.
text = ''
for model, exp in model_mismatch:
text += "The '%s' %s model cannot be used as no %s experiment types have been set up.\n" % (
model, exp, exp)
# The error message.
error_message(text, caption='Model mismatch')
return
# Display the relax controller, and go to the end of the log window.
self.gui.show_controller(None)
self.gui.controller.log_panel.on_goto_end(None)
# Start the thread.
self.thread = Execute_relax_disp(self.gui, data, self.data_index)
self.thread.start()
# Terminate the event.
event.Skip()
def execute(self, event):
"""Set up, execute, and process the automatic Rx analysis.
@param event: The wx event.
@type event: wx event
"""
# Flush the GUI interpreter internal queue to make sure all user functions are complete.
self.gui.interpreter.flush()
# relax execution lock.
if status.exec_lock.locked():
error_message("relax is currently executing.", "relax execution lock")
event.Skip()
return
# User warning to close windows.
self.gui.close_windows()
# Synchronise the frame data to the relax data store.
self.sync_ds(upload=True)
# Assemble all the data needed for the auto-analysis.
data, missing, model_mismatch = self.assemble_data()
# Missing data.
if len(missing):
self.missing_data = Missing_data(missing)
return
# Model mismatch.
if len(model_mismatch):
# Generate the text.
text = ''
for model, exp in model_mismatch:
text += "The '%s' %s model cannot be used as no %s experiment types have been set up.\n" % (model, exp, exp)
# The error message.
error_message(text, caption='Model mismatch')
return
# Display the relax controller, and go to the end of the log window.
self.gui.show_controller(None)
self.gui.controller.log_panel.on_goto_end(None)
# Start the thread.
self.thread = Execute_relax_disp(self.gui, data, self.data_index)
self.thread.start()
# Terminate the event.
event.Skip()
def on_page_changing(self, event):
"""Block page changing if needed.
@param event: The wx event.
@type event: wx event
"""
# Execution lock.
if status.exec_lock.locked():
# Show an error message.
error_message("Cannot change analyses, relax is currently executing.", "relax execution lock")
# Veto the event.
event.Veto()
def on_page_changing(self, event):
"""Block page changing if needed.
@param event: The wx event.
@type event: wx event
"""
# Execution lock.
if status.exec_lock.locked():
# Show an error message.
error_message("Cannot change analyses, relax is currently executing.", "relax execution lock")
# Veto the event.
event.Veto()
def relax_manual(self, event=None):
"""Display the relax manual.
@keyword event: The wx event.
@type event: wx event
"""
# The PDF manual.
file = status.install_path + sep+"docs"+sep+"relax.pdf"
# Test if it exists.
if not access(file, F_OK):
error_message("The relax manual '%s' cannot be found. Please compile using the scons program." % file)
return
# Open the relax PDF manual using the native PDF reader.
open_file(file)
def execute(self, event):
"""Set up, execute, and process the automatic Rx analysis.
@param event: The wx event.
@type event: wx event
"""
# Flush the GUI interpreter internal queue to make sure all user functions are complete.
self.gui.interpreter.flush()
# relax execution lock.
if status.exec_lock.locked():
error_message("relax is currently executing.",
"relax execution lock")
event.Skip()
return
# User warning to close windows.
self.gui.close_windows()
# Synchronise the frame data to the relax data store.
self.sync_ds(upload=True)
# Assemble all the data needed for the auto-analysis.
data, missing = self.assemble_data()
# Missing data.
if len(missing):
self.missing_data = Missing_data(missing)
return
# Display the relax controller, and go to the end of the log window.
self.gui.show_controller(None)
self.gui.controller.log_panel.on_goto_end(None)
# Start the thread.
self.thread = Execute_rx(self.gui, data, self.data_index)
self.thread.start()
# Terminate the event.
event.Skip()
def execute(self, event):
"""Set up, execute, and process the automatic Rx analysis.
@param event: The wx event.
@type event: wx event
"""
# Flush the GUI interpreter internal queue to make sure all user functions are complete.
self.gui.interpreter.flush()
# relax execution lock.
if status.exec_lock.locked():
error_message("relax is currently executing.", "relax execution lock")
event.Skip()
return
# User warning to close windows.
self.gui.close_windows()
# Synchronise the frame data to the relax data store.
self.sync_ds(upload=True)
# Assemble all the data needed for the auto-analysis.
data, missing = self.assemble_data()
# Missing data.
if len(missing):
self.missing_data = Missing_data(missing)
return
# Display the relax controller, and go to the end of the log window.
self.gui.show_controller(None)
self.gui.controller.log_panel.on_goto_end(None)
# Start the thread.
self.thread = Execute_rx(self.gui, data, self.data_index)
self.thread.start()
# Terminate the event.
event.Skip()
def load_peaklist(self, event):
"""Function to load peak lists to data grid.
@param event: The wx event.
@type event: wx event
"""
# The dialog.
dialog = RelaxFileDialog(parent=self,
message='Select the %s peak list file' %
self.label,
style=wx.FD_OPEN | wx.FD_MULTIPLE)
# Show the dialog and catch if no file has been selected.
if status.show_gui and dialog.ShowModal() != wx.ID_OK:
# Don't do anything.
return
# The files.
files = dialog.get_file()
# Fill values in data grid
index = 0
for i in range(self.num_rows):
# Add entry if nothing is filled in already
if str(self.grid.GetCellValue(i, 0)) == '':
# Write peak file
self.grid.SetCellValue(i, 0, str(files[index]))
# Next file
index = index + 1
# Stop if no files left
if index == len(files):
break
# Error message if not all files were loaded
if index < (len(files) - 1):
error_message('Not all files could be loaded.')
def load_peaklist(self, event):
"""Function to load peak lists to data grid.
@param event: The wx event.
@type event: wx event
"""
# The dialog.
dialog = RelaxFileDialog(parent=self, message='Select the %s peak list file'%self.label, style=wx.FD_OPEN|wx.FD_MULTIPLE)
# Show the dialog and catch if no file has been selected.
if status.show_gui and dialog.ShowModal() != wx.ID_OK:
# Don't do anything.
return
# The files.
files = dialog.get_file()
# Fill values in data grid
index = 0
for i in range(self.num_rows):
# Add entry if nothing is filled in already
if str(self.grid.GetCellValue(i, 0)) == '':
# Write peak file
self.grid.SetCellValue(i, 0, str(files[index]))
# Next file
index = index + 1
# Stop if no files left
if index == len(files):
break
# Error message if not all files were loaded
if index < (len(files)-1):
error_message('Not all files could be loaded.')
def new_analysis(self, analysis_type=None, analysis_name=None, pipe_name=None, pipe_bundle=None, uf_exec=[], index=None):
"""Initialise a new analysis.
@keyword analysis_type: The type of analysis to initialise. This can be one of 'noe', 'r1', 'r2', 'mf' or 'relax_disp'.
@type analysis_type: str
@keyword analysis_name: The name of the analysis to initialise.
@type analysis_name: str
@keyword pipe_name: The name of the original data pipe to create for the analysis.
@type pipe_name: str
@keyword pipe_bundle: The name of the data pipe bundle to associate with this analysis.
@type pipe_bundle: str
@keyword uf_exec: The list of user function on_execute methods returned from the new analysis wizard.
@type uf_exec: list of methods
@keyword index: The index of the analysis in the relax data store (set to None if no data currently exists).
@type index: None or int
"""
# Check the C modules.
if analysis_type in ['r1', 'r2'] and not dep_check.C_module_exp_fn:
error_message("Relaxation curve fitting is not available. Try compiling the C modules on your platform.")
return
# Check the C modules.
if analysis_type == 'relax_disp' and not dep_check.C_module_exp_fn:
error_message("Relaxation curve fitting will not available for this dispersion analysis. Try compiling the C modules on your platform if you have measured full exponential curves.")
# Freeze the GUI.
wx.Yield()
wx.BeginBusyCursor()
self.gui.Freeze()
# Starting from the initial state.
if self.init_state:
# A new sizer for the notebook (to replace the current sizer).
sizer = wx.BoxSizer(wx.VERTICAL)
# Create a notebook and add it to the sizer.
self.notebook = wx.Notebook(self.gui, -1, style=wx.NB_TOP)
sizer.Add(self.notebook, 1, wx.ALL|wx.EXPAND, 0)
# Bind changing events.
self.gui.Bind(wx.EVT_NOTEBOOK_PAGE_CHANGING, self.on_page_changing)
self.gui.Bind(wx.EVT_NOTEBOOK_PAGE_CHANGED, self.on_page_changed)
# Delete the previous sizer.
old_sizer = self.gui.GetSizer()
old_sizer.DeleteWindows()
# Add the new sizer to the main window.
self.gui.SetSizer(sizer)
sizer.Layout()
# The analysis classes.
classes = {
'noe': Auto_noe,
'r1': Auto_r1,
'r2': Auto_r2,
'mf': Auto_model_free,
'relax_disp': Auto_relax_disp
}
# Bad analysis type.
if analysis_type not in classes:
raise RelaxError("The analysis '%s' is unknown." % analysis_type)
# Initialise the class.
analysis = classes[analysis_type](parent=self.notebook, id=-1, gui=self.gui, analysis_name=analysis_name, pipe_name=pipe_name, pipe_bundle=pipe_bundle, uf_exec=uf_exec, data_index=index)
# Failure.
if not analysis.init_flag:
# Reset.
if self.init_state:
self.set_init_state()
# Stop operation.
return
# Append the class object to the analysis window object.
self._analyses.append(analysis)
# Add to the notebook.
self.notebook.AddPage(self._analyses[-1], analysis_name)
# Increment the number of analyses.
self._num_analyses += 1
# Switch to the new page.
if self._switch_flag:
self.switch_page(self._num_analyses-1)
# Set the initialisation flag.
self.init_state = False
# Reset the main window layout.
self.gui.Layout()
# Thaw the GUI.
self.gui.Thaw()
if wx.IsBusy():
wx.EndBusyCursor()
# Notify the observers of the change.
status.observers.gui_analysis.notify()
def new_analysis(self, analysis_type=None, analysis_name=None, pipe_name=None, pipe_bundle=None, uf_exec=[], index=None):
"""Initialise a new analysis.
@keyword analysis_type: The type of analysis to initialise. This can be one of 'noe', 'r1', 'r2', 'mf' or 'relax_disp'.
@type analysis_type: str
@keyword analysis_name: The name of the analysis to initialise.
@type analysis_name: str
@keyword pipe_name: The name of the original data pipe to create for the analysis.
@type pipe_name: str
@keyword pipe_bundle: The name of the data pipe bundle to associate with this analysis.
@type pipe_bundle: str
@keyword uf_exec: The list of user function on_execute methods returned from the new analysis wizard.
@type uf_exec: list of methods
@keyword index: The index of the analysis in the relax data store (set to None if no data currently exists).
@type index: None or int
"""
# Check the C modules.
if analysis_type in ['r1', 'r2'] and not dep_check.C_module_exp_fn:
error_message("Relaxation curve fitting is not available. Try compiling the C modules on your platform.")
return
# Check the C modules.
if analysis_type == 'relax_disp' and not dep_check.C_module_exp_fn:
error_message("Relaxation curve fitting will not available for this dispersion analysis. Try compiling the C modules on your platform if you have measured full exponential curves.")
# Freeze the GUI.
wx.Yield()
wx.BeginBusyCursor()
self.gui.Freeze()
# Starting from the initial state.
if self.init_state:
# A new sizer for the notebook (to replace the current sizer).
sizer = wx.BoxSizer(wx.VERTICAL)
# Create a notebook and add it to the sizer.
self.notebook = wx.Notebook(self.gui, -1, style=wx.NB_TOP)
sizer.Add(self.notebook, 1, wx.ALL|wx.EXPAND, 0)
# Bind changing events.
self.gui.Bind(wx.EVT_NOTEBOOK_PAGE_CHANGING, self.on_page_changing)
self.gui.Bind(wx.EVT_NOTEBOOK_PAGE_CHANGED, self.on_page_changed)
# Delete the previous sizer.
old_sizer = self.gui.GetSizer()
old_sizer.DeleteWindows()
# Add the new sizer to the main window.
self.gui.SetSizer(sizer)
sizer.Layout()
# The analysis classes.
classes = {
'noe': Auto_noe,
'r1': Auto_r1,
'r2': Auto_r2,
'mf': Auto_model_free,
'relax_disp': Auto_relax_disp
}
# Bad analysis type.
if analysis_type not in classes.keys():
raise RelaxError("The analysis '%s' is unknown." % analysis_type)
# Initialise the class.
analysis = classes[analysis_type](parent=self.notebook, id=-1, gui=self.gui, analysis_name=analysis_name, pipe_name=pipe_name, pipe_bundle=pipe_bundle, uf_exec=uf_exec, data_index=index)
# Failure.
if not analysis.init_flag:
# Reset.
if self.init_state:
self.set_init_state()
# Stop operation.
return
# Append the class object to the analysis window object.
self._analyses.append(analysis)
# Add to the notebook.
self.notebook.AddPage(self._analyses[-1], analysis_name)
# Increment the number of analyses.
self._num_analyses += 1
# Switch to the new page.
if self._switch_flag:
self.switch_page(self._num_analyses-1)
# Set the initialisation flag.
self.init_state = False
# Reset the main window layout.
self.gui.Layout()
# Thaw the GUI.
self.gui.Thaw()
if wx.IsBusy():
wx.EndBusyCursor()
# Notify the observers of the change.
status.observers.gui_analysis.notify()