def __init__(self, parent=None):
QtGui.QWidget.__init__(self, parent)
self.ui = Ui_Retrieval()
self.ui.setupUi(self)
self.preference = PreferenceApp()
self.filecontent = FileContentApp()
self.helpDocument = helpDocumentApp()
self.index_run = 0
self.index_show = 0
self.ui.actionQuit.triggered.connect(self.projectClose)
self.ui.actionRun.triggered.connect(self.run)
self.ui.actionHelp.triggered.connect(self.helpDocumentShow)
self.icon1 = QtGui.QIcon()
self.icon1.addPixmap(QtGui.QPixmap(":/image/imge/retrieval.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.retrieval_toolButton = QtGui.QToolButton()
self.retrieval_toolButton.setObjectName('retrieval')
self.retrieval_toolButton.setText("Protein Retrieval")
self.retrieval_toolButton.setIcon(self.icon1)
self.retrieval_toolButton.setIconSize(QtCore.QSize(300, 80))
self.retrieval_toolButton.setAutoRaise(True)
self.retrieval_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.ui.actionQuit.triggered.connect(self.buttonClose)
self.retrieval_toolButton.connect(self.retrieval_toolButton,
QtCore.SIGNAL(("clicked()")),
self.setwindowtop)
self.icon2 = QtGui.QIcon()
self.icon2.addPixmap(QtGui.QPixmap(":/image/imge/close.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.project_toolButton = QtGui.QToolButton()
self.project_toolButton.setText("CLOSE")
self.project_toolButton.setIcon(self.icon2)
self.project_toolButton.setIconSize(QtCore.QSize(100, 80))
self.project_toolButton.setAutoRaise(True)
self.project_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.ui.protein_Button.connect(self.ui.protein_Button,
QtCore.SIGNAL(("clicked()")),
self.openpdb)
self.ui.database_Button.connect(self.ui.database_Button,
QtCore.SIGNAL(("clicked()")),
self.opendb)
##########change for different platform############
#######for console test##########
self.default_database = "/Users/Song/Desktop/smalldatabase"
self.ui.database_lineEdit.setText(self.default_database)
def __init__(self, targetdir, parent=None):
QtGui.QWidget.__init__(self, parent)
self.ui = Ui_Pregxs()
self.ui.setupUi(self)
self.ui.actionQuit.triggered.connect(self.projectClose)
self.ui.actionRun.triggered.connect(self.pregxs)
self.ui.tabWidget.setCurrentIndex(0)
self.ui.pushButton.connect(self.ui.pushButton,
QtCore.SIGNAL(("clicked()")),
self.openfile_dat)
self.targetdir = targetdir
icon1 = QtGui.QIcon()
icon1.addPixmap(QtGui.QPixmap(":/image/imge/pregxs.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.helpDocument = helpDocumentApp()
self.refine_toolButton = QtGui.QToolButton()
self.refine_toolButton.setText("P(r) Estimation")
self.refine_toolButton.setIcon(icon1)
self.refine_toolButton.setIconSize(QtCore.QSize(300, 80))
self.refine_toolButton.setAutoRaise(True)
self.refine_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.ui.statusbar.showMessage(
'Small Angle Scattering ToolBox1.0.0 P(r) Estimation'
)
self.ui.actionQuit.triggered.connect(self.buttonclose)
self.refine_toolButton.connect(self.refine_toolButton,
QtCore.SIGNAL(("clicked()")),
self.setwindowtop)
self.icon2 = QtGui.QIcon()
self.icon2.addPixmap(QtGui.QPixmap(":/image/imge/close.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.project_toolButton = QtGui.QToolButton()
self.project_toolButton.setText("CLOSE")
#self.superpose_toolButton.setText("Superpose models at low resolutions")
self.project_toolButton.setIcon(self.icon2)
self.project_toolButton.setIconSize(QtCore.QSize(100, 80))
self.project_toolButton.setAutoRaise(True)
self.project_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.project_toolButton.connect(self.project_toolButton,
QtCore.SIGNAL(("clicked()")),
self.projectClose)
self.ui.pregxs_saxs_showButton.connect(self.ui.pregxs_saxs_showButton,
QtCore.SIGNAL(("clicked()")),
self.showsaxs)
self.ui.actionhelp.triggered.connect(self.helpDocumentShow)
def __init__(self, targetdir, parent=None):
QtGui.QWidget.__init__(self, parent)
self.ui = Ui_Shapeup()
self.ui.setupUi(self)
self.index_run = 0
self.index_show = 0
self.ui.shapeup_actionQuit.triggered.connect(self.projectClose)
self.helpDocument = helpDocumentApp()
self.preference = PreferenceApp()
self.ui.shapeup_actionRun.triggered.connect(self.shapeup)
self.ui.actionShow_maps.triggered.connect(self.showmaps)
self.ui.shapeup_tabWidget.setCurrentIndex(0)
self.ui.shapeup_sasfile_pushButton.connect(
self.ui.shapeup_sasfile_pushButton, QtCore.SIGNAL(("clicked()")),
self.openfile_sas)
self.ui.shapeup_model_pushButton.connect(
self.ui.shapeup_model_pushButton, QtCore.SIGNAL(("clicked()")),
self.openfile_model)
#self.ui.shapeup_output_pushButton.connect(self.ui.shapeup_output_pushButton,QtCore.SIGNAL(( "clicked()")),self.opendir_output)
self.ui.shapeup_saxs_showButton.connect(
self.ui.shapeup_saxs_showButton, QtCore.SIGNAL(("clicked()")),
self.showsaxs)
self.targetdir = targetdir
self.ui.shapeup_statusbar.showMessage(
'Small Angle Scattering ToolBox1.0.0 Shape Search Engine'
)
self.icon1 = QtGui.QIcon()
self.icon1.addPixmap(QtGui.QPixmap(":/image/imge/shapeup.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.shapeup_toolButton = QtGui.QToolButton()
self.shapeup_toolButton.setText("Shape Search Engine")
self.shapeup_toolButton.setIcon(self.icon1)
self.shapeup_toolButton.setIconSize(QtCore.QSize(300, 80))
self.shapeup_toolButton.setAutoRaise(True)
self.shapeup_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.ui.shapeup_actionQuit.triggered.connect(self.buttonClose)
self.shapeup_toolButton.connect(self.shapeup_toolButton,
QtCore.SIGNAL(("clicked()")),
self.setwindowtop)
self.icon2 = QtGui.QIcon()
self.icon2.addPixmap(QtGui.QPixmap(":/image/imge/close.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.project_toolButton = QtGui.QToolButton()
self.project_toolButton.setText("CLOSE")
#self.superpose_toolButton.setText("Superpose models at low resolutions")
self.project_toolButton.setIcon(self.icon2)
self.project_toolButton.setIconSize(QtCore.QSize(100, 80))
self.project_toolButton.setAutoRaise(True)
self.project_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.project_toolButton.connect(self.project_toolButton,
QtCore.SIGNAL(("clicked()")),
self.projectClose)
self.ui.shapeup_actionHelp.triggered.connect(self.helpDocumentShow)
self.result_table = result_table.SongTable()
self.result_button = QtGui.QPushButton("show in pymol", self)
self.result_button.setIcon(QtGui.QIcon(":/image/imge/pymol.png"))
self.result_button.setStyleSheet("""
background:gray;
""")
self.result_button2 = QtGui.QPushButton("View the Content", self)
self.result_button2.setIcon(QtGui.QIcon(":/image/imge/directory.png"))
self.result_button2.setStyleSheet("""
background:gray;
""")
self.button_layout = QtGui.QHBoxLayout()
self.button_layout.addWidget(self.result_button)
self.button_layout.addWidget(self.result_button2)
self.button_widget = QtGui.QWidget()
self.button_widget.setLayout(self.button_layout)
self.result_layout = QtGui.QVBoxLayout()
self.result_layout.addWidget(self.result_table)
self.result_layout.addWidget(self.button_widget)
self.result_widget = QtGui.QWidget()
self.result_widget.setLayout(self.result_layout)
self.filecontent = FileContentApp()
self.result_table.table.cellClicked.connect(self.get_resultItem)
self.result_button.connect(self.result_button,
QtCore.SIGNAL(("clicked()")),
self.view_inPymol)
self.result_button2.connect(self.result_button2,
QtCore.SIGNAL(("clicked()")),
self.view_inDirectory)
self.item_list = []
def __init__(self, targetdir, parent=None):
QtGui.QWidget.__init__(self, parent)
self.ui = Ui_She()
self.ui.setupUi(self)
self.ui.actionQuit.triggered.connect(self.projectClose)
self.ui.actionRun.triggered.connect(self.she)
self.helpDocument = helpDocumentApp()
self.ui.tabWidget.setCurrentIndex(0)
self.ui.pdb_button.connect(self.ui.pdb_button,
QtCore.SIGNAL(("clicked()")),
self.openfile_pdb)
self.ui.saxs_button.connect(self.ui.saxs_button,
QtCore.SIGNAL(("clicked()")),
self.openfile_saxs)
self.ui.statusbar.showMessage(
'Small Angle Scattering ToolBox1.0.0 Intensity Calculation'
)
self.ui.saxs_show_pushButton.connect(self.ui.saxs_show_pushButton,
QtCore.SIGNAL(("clicked()")),
self.show_saxs)
self.targetdir = targetdir
icon1 = QtGui.QIcon()
icon1.addPixmap(QtGui.QPixmap(":/image/imge/she.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.she_toolButton = QtGui.QToolButton()
self.she_toolButton.setText(
"Compute theoretical scattering intensity curve")
self.she_toolButton.setIcon(icon1)
self.she_toolButton.setIconSize(QtCore.QSize(300, 80))
self.she_toolButton.setAutoRaise(True)
self.she_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.ui.actionQuit.triggered.connect(self.buttonclose)
self.she_toolButton.connect(self.she_toolButton,
QtCore.SIGNAL(("clicked()")),
self.setwindowtop)
self.icon2 = QtGui.QIcon()
self.icon2.addPixmap(QtGui.QPixmap(":/image/imge/close.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.project_toolButton = QtGui.QToolButton()
self.project_toolButton.setText("CLOSE")
#self.superpose_toolButton.setText("Superpose models at low resolutions")
self.project_toolButton.setIcon(self.icon2)
self.project_toolButton.setIconSize(QtCore.QSize(100, 80))
self.project_toolButton.setAutoRaise(True)
self.project_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.project_toolButton.connect(self.project_toolButton,
QtCore.SIGNAL(("clicked()")),
self.projectClose)
#self.ui.tabWidget.setTabEnabled(3,False)
# self.ui.summary_tableWidget.setColumnCount(4)
# self.ui.summary_tableWidget.setRowCount(2)
# self.ui.summary_tableWidget.setHorizontalHeaderLabels(["File Path","type","Show","Compare"])
# self.ui.summary_tableWidget.setColumnWidth(0, 400)
# self.ui.summary_tableWidget.setColumnWidth(1, 80)
# self.ui.summary_tableWidget.setColumnWidth(2, 80)
# self.ui.summary_tableWidget.setColumnWidth(3, 105)
self.ui.actionHelp.triggered.connect(self.helpDocumentShow)
self.ui.starting_q_LineEdit.setText("0")
self.ui.stopping_q_LineEdit.setText("0.5")
self.ui.number_of_n_LineEdit.setText("51")
def __init__(self, targetdir, parent=None):
#super(SuperposeApp, self).__init__(parent)
QtGui.QWidget.__init__(self, parent)
self.ui = Ui_Superpose()
self.ui.setupUi(self)
self.preference = PreferenceApp()
self.index_run = 0
self.index_show = 0
self.ui.Superpose_actionQuit.triggered.connect(self.projectClose)
self.ui.actionShow.triggered.connect(self.show_pml)
self.ui.Superpose_actionRun.triggered.connect(self.superpose)
self.ui.superpose_tabWidget.setCurrentIndex(0)
self.ui.Superpose_fix_pushButton.connect(
self.ui.Superpose_fix_pushButton, QtCore.SIGNAL(("clicked()")),
self.openfile_fix)
self.ui.Superpose_mov_pushButton.connect(
self.ui.Superpose_mov_pushButton, QtCore.SIGNAL(("clicked()")),
self.openfile_mov)
self.ui.superpose_statusbar.showMessage(
'Small Angle Scattering ToolBox 1.0.0 Model Superposition'
)
self.targetdir = targetdir
self.icon1 = QtGui.QIcon()
self.icon1.addPixmap(QtGui.QPixmap(":/image/imge/superpose.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.superpose_toolButton = QtGui.QToolButton()
self.superpose_toolButton.setObjectName('superpose')
self.superpose_toolButton.setText("Model Superposition")
#self.superpose_toolButton.setStyleSheet("font-size:30px;background-color:rgb(217,193,153,104);\
# :border 2pxsolid #333333")
#self.superpose_toolButton.setStyleSheet("font-size:30px")
#self.superpose_toolButton.setText("Superpose models at low resolutions")
self.superpose_toolButton.setIcon(self.icon1)
self.superpose_toolButton.setIconSize(QtCore.QSize(300, 80))
self.superpose_toolButton.setAutoRaise(True)
self.superpose_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.ui.Superpose_actionQuit.triggered.connect(self.buttonClose)
self.superpose_toolButton.connect(self.superpose_toolButton,
QtCore.SIGNAL(("clicked()")),
self.setwindowtop)
self.icon2 = QtGui.QIcon()
self.icon2.addPixmap(QtGui.QPixmap(":/image/imge/close.png"),
QtGui.QIcon.Normal, QtGui.QIcon.Off)
self.project_toolButton = QtGui.QToolButton()
self.project_toolButton.setText("CLOSE")
#self.superpose_toolButton.setText("Superpose models at low resolutions")
self.project_toolButton.setIcon(self.icon2)
self.project_toolButton.setIconSize(QtCore.QSize(100, 80))
self.project_toolButton.setAutoRaise(True)
self.project_toolButton.setToolButtonStyle(
QtCore.Qt.ToolButtonTextBesideIcon)
self.result_table = result_table.SongTable()
self.result_button = QtGui.QPushButton("show in pymol", self)
self.result_button.setIcon(
QtGui.QIcon(QtGui.QPixmap(":/image/imge/pymol.png")))
self.result_button.setStyleSheet("""
background:gray;
""")
self.result_button2 = QtGui.QPushButton("View the Content", self)
self.result_button2.setIcon(
QtGui.QIcon(QtGui.QPixmap(":/image/imge/directory.png")))
self.result_button2.setStyleSheet("""
background:gray;
""")
self.button_layout = QtGui.QHBoxLayout()
self.button_layout.addWidget(self.result_button)
self.button_layout.addWidget(self.result_button2)
self.button_widget = QtGui.QWidget()
self.button_widget.setLayout(self.button_layout)
self.result_layout = QtGui.QVBoxLayout()
self.result_layout.addWidget(self.result_table)
self.result_layout.addWidget(self.button_widget)
self.result_widget = QtGui.QWidget()
self.result_widget.setLayout(self.result_layout)
self.filecontent = FileContentApp()
self.helpDocument = helpDocumentApp()
self.ui.Superpose_actionHelp.triggered.connect(self.helpDocumentShow)
self.project_toolButton.connect(self.project_toolButton,
QtCore.SIGNAL(("clicked()")),
self.projectClose)
self.result_table.table.cellClicked.connect(self.get_resultItem)
self.result_button.connect(self.result_button,
QtCore.SIGNAL(("clicked()")),
self.view_inPymol)
self.result_button2.connect(self.result_button2,
QtCore.SIGNAL(("clicked()")),
self.view_inDirectory)
self.item_list = []