def extract(self, experiment, type, indiv):
filepath = experiment[2] + os.path.sep + PathConfig.populationFolderNormal + os.path.sep + indiv[0] + "_vox.vxa"
if os.path.isfile(filepath):
vd = VoxelData(filepath)
absCounts = vd.getAbsCounts()
if not absCounts:
return ['NA']
probability = (absCounts["fat"] / 1000.0) * 0.5
return [probability]
else:
return ['NA']
def extract(self, experiment, type, indiv):
noResultVal = ['NA'] * 4
filepath = GetAltFile.getAltPopFile(experiment, type, indiv)
if filepath != False:
vd = VoxelData(filepath)
absCounts = vd.getAbsCounts()
if not absCounts:
return noResultVal
return [absCounts["fat"], absCounts["muscle"], absCounts["bone"], sum(absCounts.values())]
else:
return noResultVal
def extract(self, experiment, type, indiv):
noResultVal = ['NA'] * 4
filepath = experiment[2] + os.path.sep + PathConfig.populationFolderNormal + os.path.sep + indiv[0] + "_vox.vxa"
if os.path.isfile(filepath):
vd = VoxelData(filepath)
absCounts = vd.getAbsCounts()
if not absCounts:
return noResultVal
return [absCounts["fat"], absCounts["muscle"], absCounts["bone"], sum(absCounts.values())]
else:
return noResultVal
