def run(args):
heat = args.heat_fn(args)
if args.heat_fn != load_mutation_heat and args.gene_filter_file:
heat = hnheat.reconcile_heat_with_tested_genes(heat, hnio.load_genes(args.gene_filter_file))
args.heat_fn = args.heat_fn.__name__
output_dict = {"parameters": vars(args), "heat": heat}
output_file = open(args.output_file, 'w') if args.output_file else sys.stdout
json.dump(output_dict, output_file, indent=4)
if (args.output_file): output_file.close()
def run(args):
heat = args.heat_fn(args)
if args.heat_fn != load_mutation_heat and args.gene_filter_file:
heat = hnheat.reconcile_heat_with_tested_genes(
heat, hnio.load_genes(args.gene_filter_file))
args.heat_fn = args.heat_fn.__name__
output_dict = {"parameters": vars(args), "heat": heat}
output_file = open(args.output_file,
'w') if args.output_file else sys.stdout
json.dump(output_dict, output_file, indent=4)
if (args.output_file): output_file.close()