def test_SimpleAlignmentIo_readLines(self, its=50):
for it in range(its):
alignment = gen_alignment()
framePeriod = gen_framePeriod()
alignmentIo = alio.SimpleAlignmentIo(framePeriod)
alignmentLines = alignmentIo.writeLines(alignment)
alignmentAgain = alignmentIo.readLines(alignmentLines)
self.assertEqual(alignmentAgain, alignment)
def test_AlignmentIo_writeLines_1_level(self, its=50):
for it in range(its):
framePeriod = gen_framePeriod()
alignment = gen_alignment()
simpleAlignmentIo = alio.SimpleAlignmentIo(framePeriod)
alignmentIo = alio.AlignmentIo(framePeriod)
self.assertEqual(
simpleAlignmentIo.writeLines(alignment),
alignmentIo.writeLines(alignment)
)
def test_SimpleAlignmentIo_writeLines_concat(self, its=50):
for it in range(its):
framePeriod = gen_framePeriod()
alignmentIo = alio.SimpleAlignmentIo(framePeriod)
alignment = gen_alignment()
breakIndex = randint(len(alignment) + 1)
alignment0 = alignment[:breakIndex]
alignment1 = alignment[breakIndex:]
alignmentLines0 = alignmentIo.writeLines(alignment0)
alignmentLines1 = alignmentIo.writeLines(alignment1)
alignmentLines = alignmentIo.writeLines(alignment)
self.assertEqual(alignmentLines0 + alignmentLines1, alignmentLines)
def test_SimpleAlignmentIo_writeLines_single_line(self, its=50):
for it in range(its):
framePeriod = gen_framePeriod()
alignmentIo = alio.SimpleAlignmentIo(framePeriod)
startTime = randint(-10, 11)
dur = randint(10)
endTime = startTime + dur
label = gen_label()
alignment = [(startTime, endTime, label, None)]
alignmentLines = alignmentIo.writeLines(alignment)
startTicks = int(round(startTime * framePeriod * 1e7))
endTicks = int(round(endTime * framePeriod * 1e7))
alignmentLinesGood = ['%s %s %s' % (startTicks, endTicks, label)]
self.assertEqual(alignmentLines, alignmentLinesGood)
def test_SimpleAlignmentIo_writeLines_empty(self):
framePeriod = gen_framePeriod()
alignmentIo = alio.SimpleAlignmentIo(framePeriod)
self.assertEqual(alignmentIo.writeLines([]), [])