def test_sync_extract(self):
session_path = self.session_path
dry = False
ibllib.io.flags.create_other_flags(session_path,
'extract_ephys.flag',
force=True)
iblrig_pipeline.extract_ephys(session_path, dry=dry)
one = ONE(base_url='https://test.alyx.internationalbrainlab.org',
username='******',
password='******')
iblrig_pipeline.register(session_path, one=one)
def rerun_register(ses_path, drange, dry=True):
# compute the date range including both bounds
files_error, files_error_date = _order_glob_by_session_date(
ses_path.rglob('register_me.error'))
for file_error, date in zip(files_error, files_error_date):
if not (date >= drange[0] and (date <= drange[1])):
continue
print(file_error)
if dry:
continue
file_error.unlink()
flags.create_register_flags(file_error.parent, force=True)
pipes.register(file_error.parent)
default='1999-12-12',
type=str)
parser.add_argument('--last',
help='yyyy-mm-dd date',
required=False,
default='2050-12-12',
type=str)
args = parser.parse_args(
) # returns data from the options specified (echo)
if args.dry and args.dry.lower() == 'false':
args.dry = False
assert (Path(args.folder).exists())
ses_path = Path(args.folder)
# compute the date range including both bounds
files_error, files_error_date = _order_glob_by_session_date(
ses_path.rglob('register_me.error'))
drange = [parse(args.first), parse(args.last)]
for file_error, date in zip(files_error, files_error_date):
if not (date >= drange[0] and (date <= drange[1])):
continue
print(file_error)
if args.dry:
continue
file_error.unlink()
flags.create_register_flags(file_error.parent, force=True)
register(file_error.parent)
def _registration(self):
iblrig_pipeline.register(self.server_folder, one=self.one)
# Check for deletion of register_me.flag
rflags = list(self.server_folder.rglob('register_me.flag'))
self.assertTrue(rflags == [])
parser = argparse.ArgumentParser(description="Description of your program")
parser.add_argument("action", help="Action: " + ",".join(ALLOWED_ACTIONS))
parser.add_argument("folder", help="A Folder containing a session")
parser.add_argument("--dry",
help="Dry Run",
required=False,
default=False,
type=str)
parser.add_argument(
"--count",
help="Max number of sessions to run this on",
required=False,
default=False,
type=int,
)
args = parser.parse_args(
) # returns data from the options specified (echo)
if args.dry and args.dry.lower() == "false":
args.dry = False
assert Path(args.folder).exists()
if args.action == "extract":
extract(args.folder, dry=args.dry)
elif args.action == "register":
register(args.folder, dry=args.dry)
elif args.action == "create":
create(args.folder, dry=args.dry)
elif args.action == "compress_video":
compress_video(args.folder, dry=args.dry, max_sessions=args.count)
else:
logger.error("Allowed actions are: " + ", ".join(ALLOWED_ACTIONS))
def test_sync_extract(self):
session_path = self.session_path
ibllib.io.flags.create_extract_flags(session_path, force=True)
extract_session.bulk(self.session_path)
one = ONE(base_url='https://test.alyx.internationalbrainlab.org')
iblrig_pipeline.register(session_path, one=one)