def view(request, information_uuid):
""" """
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
information = Information(api_client=api_client, uuid=information_uuid)
project = information.project
processes = information.processes
except Exception as e:
exception_msg = 'Unable to load information entity. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
try:
information_types = get_information_type_keys(project)
information_fields = get_information_fields(project, information.value['information_type'])
information.set_fields(information_fields)
except Exception as e:
exception_msg = 'Unable to load config values. %s' % e
logger.warning(exception_msg)
context = {'information': information,
'project': project,
'processes': processes,
'information_types': information_types}
return render(request, 'ids_projects/information/detail.html', context)
def view(request, specimen_uuid):
""" """
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
specimen = Specimen(api_client=api_client, uuid=specimen_uuid)
project = specimen.project
processes = specimen.processes
except Exception as e:
exception_msg = 'Unable to load specimen. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect('/projects')
try:
process_types = get_process_type_keys(project)
specimen_fields = get_specimen_fields(project)
specimen.set_fields(specimen_fields)
context = {'project': project,
'specimen': specimen,
'processes': processes,
'process_types': process_types}
return render(request, 'ids_projects/specimens/detail.html', context)
except Exception as e:
exception_msg = 'Unable to load config values. %s' % e
logger.warning(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
def view(request, project_uuid):
"""Queries project metadata and all associated metadata"""
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
# api_client = get_portal_api_client()
api_client = request.user.agave_oauth.api_client
try:
project = Project(api_client=api_client, uuid=project_uuid)
except Exception as e:
exception_msg = 'Unable to load project. %s' % e
logger.error(exception_msg)
messages.error(request, exception_msg)
return HttpResponseRedirect('/projects/')
try:
process_types = get_process_type_keys(project)
project_fields = get_project_form_fields()
project.set_fields(project_fields)
investigation_type = get_investigation_type(project)
context = {'project': project,
'investigation_type': investigation_type,
'process_types': process_types}
return render(request, 'ids_projects/projects/detail.html', context)
except Exception as e:
exception_msg = 'Unable to load config values. %s' % e
logger.warning(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(
reverse('ids_projects:project-list-private'))
def share(self, username=None, permission='READ_WRITE'):
"""
Grant permissions on this metadata object to other users. This metadata object
must have a UUID.
:param username: The username of the api user whose permission is to be set.
(Default: portal's user account)
:param permission: ['READ' or 'WRITE' or 'READ_WRITE' or 'ALL' or 'NONE']:
The permission to set. (Default: READ_WRITE)
:return: None
"""
if self.uuid is None:
raise Exception('Cannot grant permissions, objects does not have a UUID.')
if not username:
username = get_portal_api_client().profiles.get().username
perm_result = self._api_client.meta.updateMetadataPermissions(
uuid=self.uuid,
body={
'username': username,
'permission': permission
})
return perm_result
def bulk_probe_registration(self, probes_meta, project_uuid, username=None):
if username:
UserModel = get_user_model()
user = UserModel.objects.get(username=username)
api_client = user.agave_oauth.api_client
else:
api_client = get_portal_api_client()
project = Project(api_client, uuid=project_uuid)
## check if the probe is already registered by the project
for probe_info in probes_meta:
meta = {'value': probe_info}
probe = Probe(api_client=api_client, meta=meta)
probe.save()
# add_part: probe
project.add_probe(probe)
project.save()
# add_container: project
probe.add_project(project)
probe.save()
def view(request, dataset_uuid):
"""View a specific dataset"""
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
dataset = Dataset(api_client=api_client, uuid=dataset_uuid)
project = dataset.project
data = dataset.data
except Exception as e:
exception_msg = 'Unable to load process. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
try:
process_types = get_process_type_keys(project)
dataset_fields = get_dataset_fields(project)
dataset.set_fields(dataset_fields)
except Exception as e:
exception_msg = 'Unable to load config values. %s' % e
logger.warning(exception_msg)
context = { 'project': project,
'dataset': dataset,
'datas': data,
'process_types': process_types }
return render(request, 'ids_projects/datasets/detail.html', context)
def bulk_specimen_registration(self, specimens_meta, project_uuid, username=None):
if username:
UserModel = get_user_model()
user = UserModel.objects.get(username=username)
api_client = user.agave_oauth.api_client
else:
api_client = get_portal_api_client()
project = Project(api_client=api_client, uuid=project_uuid)
# ## check if the specimen is already registered by the project
# for specimen_info in specimens_meta:
# specimen_id = specimen_info['specimen_id']
# specimen = project.query_specimens_by_id([specimen_id]) # taking a list as input
# # already exists a speicmen
# if len(specimen) > 0:
# raise Exception('Specimen ID of %s already exists in this project.' % specimen_id)
## registering bulk specimens
for specimen_info in specimens_meta:
meta = {'value': specimen_info}
specimen = Specimen(api_client=api_client, meta=meta)
specimen.save()
# logger.debug("Specimen UUID: {}".format(specimen.uuid))
# add_part: specimen
project.add_specimen(specimen)
project.save()
# add_container: project
specimen.add_project(project)
specimen.save()
def view(request, material_uuid):
""" """
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
material = Material(api_client=api_client, uuid=material_uuid)
project = material.project
processes = material.processes
except Exception as e:
exception_msg = 'Unable to load material entity. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
try:
material_types = get_material_type_keys(project)
material_fields = get_material_fields(project, material.value['material_type'])
material.set_fields(material_fields)
except Exception as e:
exception_msg = 'Unable to load config values. %s' % e
logger.warning(exception_msg)
context = {'material': material,
'project': project,
'processes': processes,
'material_types': material_types}
return render(request, 'ids_projects/material/detail.html', context)
def entity_detail_api(request, uuid): if request.user.is_anonymous(): api_client = get_portal_api_client() else: api_client = request.user.agave_oauth.api_client base = BaseMetadata(api_client=api_client, uuid=uuid) return HttpResponse(json.dumps(base.meta, cls=DjangoJSONEncoder), content_type='application/json')
def upload_option(request):
project_uuid = request.GET.get('project_uuid', False)
if not project_uuid:
messages.warning(request, 'Missing project UUID, cannot create specimen.')
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
project = Project(api_client=api_client, uuid=project_uuid)
# POST
if request.method == 'POST':
context = {'project': project}
if request.POST.get('upload_option', None) == 'Single':
# Single Specimen
url = "%s?project_uuid=%s" % (reverse('ids_projects:specimen-create'), project_uuid)
return HttpResponseRedirect(url)
elif request.POST.get('upload_option', None) == 'Bulk':
try:
specimens_meta = _validate_specimens(request.FILES['file'], project)
bulk_specimen_registration.apply_async(args=(specimens_meta,
project_uuid,
request.user.username), serilizer='json')
success_msg = 'Your %d specimens have been in the registration queue.' % len(specimens_meta)
logger.info(success_msg)
messages.success(request, success_msg)
return HttpResponseRedirect(
reverse('ids_projects:project-view',
kwargs={'project_uuid': project.uuid}))
except Exception as e:
traceback.print_exc()
exception_msg = repr(e)
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(
reverse('ids_projects:project-view',
kwargs={'project_uuid': project.uuid}))
# GET
else:
context = {'project': project}
context['form_upload_file'] = UploadFileForm()
context['form_upload_option'] = UploadOptionForm()
return render(request, 'ids_projects/specimens/upload_option.html', context)
def list_public(request):
"""List all public datasets in a project"""
api_client = get_portal_api_client()
try:
public_datasets = Dataset.list(api_client=api_client)
except Exception as e:
exception_msg = 'Unable to load datasets. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
context = { 'public_datasets': public_datasets }
return render(request, 'ids_projects/datasets/index.html', context)
def get_outputs_of_api(request, uuid, offset):
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
query = {'value._relationships': {'$elemMatch': {'@id': uuid, '@rel:type': 'HasOutput'}}}
response = api_client.meta.listMetadata(q=json.dumps(query), offset=offset)
return HttpResponse(json.dumps(response, cls=DjangoJSONEncoder),
content_type='application/json')
except Exception as e:
exception_msg = 'Unable to load related objects. %s' % e
logger.error(exception_msg)
messages.error(request, exception_msg)
return HttpResponseRedirect('/projects/')
def calculate_checksum(self):
""" """
name = "checksum"
app_id = "idsvc_checksum-0.1"
archive = True
portal_client = get_portal_api_client()
if self.sra_id:
parameters = {'UUID': self.uuid, 'SRA': self.sra_id}
body = {'name': name, 'appId': app_id, 'parameters': parameters}
else:
agave_url = "agave://%s/%s" % (self.system_id, self.path)
inputs = { 'AGAVE_URL': agave_url }
parameters = { 'UUID': self.uuid }
body={'name': name, 'appId': app_id, 'inputs': inputs, 'parameters': parameters, 'archive': archive}
try:
self.meta['value'].update(
{'checksum': None,
'lastChecksumUpdated': None,
'checksumConflict': None,
'checkStatus': None})
self.save()
except Exception as e:
exception_msg = 'Unable to initiate job. %s' % e
logger.error(exception_msg)
raise Exception(exception_msg)
try:
logger.debug("Job submission body: %s" % body)
import pprint
pprint.pprint(body)
# response = self._api_client.jobs.submit(body=body)
response = portal_client.jobs.submit(body=body)
logger.debug("Job submission response: %s" % response['id'])
except Exception as e:
exception_msg = 'Unable to initiate job. %s' % e
logger.error(exception_msg)
raise Exception(exception_msg)
return response
def list(request):
""" """
project_uuid = request.GET.get('project_uuid', None)
specimen_uuid = request.GET.get('specimen_uuid', None)
process_uuid = request.GET.get('process_uuid', None)
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
project = None
specimen = None
process = None
data = None
try:
if project_uuid:
project = Project(api_client=api_client, uuid=project_uuid)
data = project.data
elif specimen_uuid:
specimen = Specimen(api_client=api_client, uuid=specimen_uuid)
data = specimen.data
project = specimen.project
elif process_uuid:
process = Process(api_client=api_client, uuid=process_uuid)
data = process.data
specimen = process.specimen
project = process.project
else:
data = Data.list(api_client=api_client)
except Exception as e:
exception_msg = 'Unable to load data. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
context = { 'project' : project,
'specimen': specimen,
'process' : process,
'data' : data }
return render(request, 'ids_projects/data/index.html', context)
def add_images(request):
print "In the add images"
project_uuid = request.GET.get('project_uuid', False)
if not project_uuid:
messages.warning(request, 'Missing project UUID, cannot create specimen.')
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
project = Project(api_client=api_client, uuid=project_uuid)
if request.method == 'POST':
if request.FILES['file'] != None:
try:
images_meta = _image_process(request.FILES['file'], project)
bulk_images_registration.apply_async(args=(images_meta, project_uuid, request.user.username), serilizer = 'json')
return HttpResponseRedirect(
reverse('ids_projects:project-view',
kwargs={'project_uuid': project.uuid}))
except Exception as e:
traceback.print_exc()
exception_msg = repr(e)
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(
reverse('ids_projects:project-view',
kwargs={'project_uuid': project.uuid}))
# GET
else:
print "GET request"
context = {'project': project}
context['form_upload_file'] = UploadFileForm()
return render(request, 'ids_projects/data/add_images.html', context)
def view(request, process_uuid):
""" """
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
process = Process(api_client=api_client, uuid=process_uuid)
project = process.project
specimen = process.specimen
data = process.data
inputs = process.inputs
outputs = process.outputs
except Exception as e:
exception_msg = "Unable to load process. %s" % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse("ids_projects:project-list-private"))
try:
process_types = get_process_type_keys(project)
process_fields = get_process_fields(project, process.value["process_type"])
process.set_fields(process_fields)
except Exception as e:
exception_msg = "Unable to load config values. %s" % e
logger.warning(exception_msg)
context = {
"process": process,
"project": project,
"specimen": specimen,
"datas": data,
"inputs": inputs,
"outputs": outputs,
"process_types": process_types,
}
return render(request, "ids_projects/processes/detail.html", context)
def bulk_images_registration(self, images_meta, project_uuid, username=None):
if username:
UserModel = get_user_model()
user = UserModel.objects.get(username=username)
api_client = user.agave_oauth.api_client
else:
api_client = get_portal_api_client()
project = Project(api_client, uuid=project_uuid)
for image_meta in images_meta:
meta = {'value': image_meta}
# create new data object
data = Data(api_client=api_client, meta=meta)
data.save()
# data.calculate_checksum()
project.add_data(data)
project.save()
data.add_project(project)
data.save()
def list(request):
"""List all specimens related to a project"""
project_uuid = request.GET.get('project_uuid', None)
if not project_uuid:
messages.warning(request, 'Missing project UUID, cannot find specimens.')
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
project = Project(api_client=api_client, uuid=project_uuid)
except Exception as e:
exception_msg = 'Unable to load project. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect('/projects/')
context = {'project': project, 'specimens': project.specimens}
return render(request, 'ids_projects/specimens/index.html', context)
def request_ark(request, dataset_uuid):
if request.method == 'GET':
context = {}
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
dataset = Dataset(api_client=api_client, uuid=dataset_uuid)
associated_ids = dataset.identifiers
if _has_identifier(associated_ids, 'ark'):
messages.warning(request, "Dataset alread has an ARK identifier.")
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
metadata = meta_for_ark(dataset)
client = ezidClient('apitest', 'apitest')
response = client.Mint('ark:/99999/fk4', metadata)
if "success" in response.keys():
ark = response['success']
identifier = Identifier(api_client=api_client, type='ark', uid=ark, dataset=dataset)
identifier.save()
dataset = _add_identifier_to_dataset(dataset, identifier)
else:
logger.error("Failed to mint an ARK identifier!")
messages.warning(request, "Error in requesting ARK!")
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
return render(request, 'ids_projects/datasets/request_doi.html', context)
except Exception as e:
exception_msg = 'Unable to load process. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
def view(request, identifier_uuid):
"""View a specific identifier"""
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
identifier = Identifier(api_client=api_client, uuid=identifier_uuid)
except Exception as e:
exception_msg = 'Unable to load process. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
try:
uid = identifier.uid
except Exception as e:
exception_msg = 'Unable to load config values. %s' % e
logger.warning(exception_msg)
url = "http://ezid.cdlib.org/id/" + uid
return HttpResponseRedirect(url)
def request_doi(request, dataset_uuid):
if request.method == 'GET':
context = {}
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
try:
dataset = Dataset(api_client=api_client, uuid=dataset_uuid)
associated_ids = dataset.identifiers
if _has_identifier(associated_ids, 'doi'):
messages.warning(request, "Dataset alread has a DOI identifier.")
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
essential = meta_for_doi(dataset)
builder = identifierBuilder()
builder.buildXML(essential)
xmlObject = builder.getXML()
# requesting doi
client = ezidClient('apitest', 'apitest')
metadata = {}
metadata["datacite"] = ET.tostring(xmlObject, encoding = "UTF-8", method = "xml")
response = client.Mint('doi:10.5072/FK2', metadata)
if "success" in response.keys():
res = response['success']
doi = res.split('|')[0].strip()
ark = res.split('|')[1].strip()
# update generated ARK as alternative identifier
essential_new = update_alternateIdentifier(essential, ark)
builder.setAlternateIdentifiers(essential_new)
xmlObject = builder.getXML()
metadata["datacite"] = ET.tostring(xmlObject, encoding = "UTF-8", method = "xml")
response = client.Update(doi, metadata)
# save identifier objects
identifier = Identifier(api_client=api_client, type='doi', uid=doi, dataset=dataset)
identifier.save()
dataset = _add_identifier_to_dataset(dataset, identifier)
# NOTES:
# It seems due to network delay, results are not printed immediately.
# However, the metadata were successfully updated in agave
# for elem in dataset.identifiers:
# print elem.title, elem.uid
else:
logger.error("Failed to mint a DOI identifier!")
messages.warning(request, "Error in requesting DOI!")
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
return render(request, 'ids_projects/datasets/request_doi.html', context)
except Exception as e:
exception_msg = 'Unable to load process. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
def bulk_ISH_registration(self, ISH_meta, process_meta, project_uuid, username=None):
if username:
UserModel = get_user_model()
user = UserModel.objects.get(username=username)
api_client = user.agave_oauth.api_client
else:
api_client = get_portal_api_client()
project = Project(api_client, uuid=project_uuid)
for ISH_link in ISH_meta:
# create a new process
process = Process(api_client=api_client, meta=process_meta)
process.save()
# two-way binding
project.add_process(process)
project.save()
process.add_project(project)
process.save()
# Query probes with given probe ids
# TO DO: What if some probes are not registered in the system
probe_ids = ISH_link['probe_id'].split(',')
logger.debug("Probe IDs: {}".format(probe_ids))
probes = project.query_probes_by_id(probe_ids)
# Query specimens with given specimen ids
specimen_ids = ISH_link['specimen_id'].split(',')
specimens = project.query_specimens_by_id(specimen_ids)
# Query data with given image uri
image_urls = ISH_link['image_url'].split(',')
images = project.query_images_by_url(image_urls)
print "number of images returned %d" % len(images)
for probe in probes:
process.add_input(probe)
probe.add_is_input_to(process)
process.save()
probe.save()
# print probe.value
# Query specimens with given specimen ids
specimen_ids = ISH_link['specimen_id'].split(',')
logger.debug("Specimen IDs: {}".format(specimen_ids))
specimens = project.query_specimens_by_id(specimen_ids)
for specimen in specimens:
process.add_input(specimen)
specimen.add_is_input_to(process)
process.save()
specimen.save()
for image in images:
process.add_output(image)
image.add_is_output_of(process)
process.save()
image.save()
def type_select(request):
""" """
project_uuid = request.GET.get('project_uuid', None)
specimen_uuid = request.GET.get('specimen_uuid', None)
process_uuid = request.GET.get('process_uuid', None)
relationship = request.GET.get('relationship', None)
# check to make sure we have at least one parent uuid (project or specimen)
if not process_uuid and not specimen_uuid and not project_uuid:
messages.warning(request, 'Missing parent UUID, cannot add data.')
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
data_type_choices = [('', 'Choose one'), ('SRA', 'SRA'), ('File','File')]
if request.user.is_anonymous():
api_client = get_portal_api_client()
else:
api_client = request.user.agave_oauth.api_client
#######
# GET #
#######
if request.method == 'GET':
project = None
specimen = None
process = None
try:
if process_uuid is not None:
process = Process(api_client=api_client, uuid=process_uuid)
specimen = process.specimen
project = process.project
elif specimen_uuid is not None:
process = None
specimen = Specimen(api_client=api_client, uuid=specimen_uuid)
project = specimen.project
elif project_uuid is not None:
process = None
specimen = None
project = Project(api_client=api_client, uuid=project_uuid)
except Exception as e:
exception_msg = 'Unable to load parent object. %s' % e
logger.error(exception_msg)
messages.warning(request, exception_msg)
return HttpResponseRedirect(reverse('ids_projects:project-list-private'))
form_data_type = DataTypeForm(data_type_choices)
context = {
'project': project,
'specimen': specimen,
'process': process,
'form_data_type': form_data_type,
'cancel_url': _get_cancel_url(request)
}
return render(request, 'ids_projects/data/type_select.html', context)
########
# POST #
########
elif request.method == 'POST':
form_data_type = DataTypeForm(data_type_choices, request.POST)
if form_data_type.is_valid():
data = form_data_type.cleaned_data
data_type = data.get('data_type')
if data_type == 'SRA':
if process_uuid is not None:
return HttpResponseRedirect('%s?process_uuid=%s' %
(reverse('ids_projects:add-sra', kwargs={'relationship': relationship}), process_uuid)
)
elif specimen_uuid is not None:
return HttpResponseRedirect('%s?specimen_uuid=%s' %
(reverse('ids_projects:add-sra', kwargs={'relationship': relationship}), specimen_uuid)
)
elif project_uuid is not None:
return HttpResponseRedirect('%s?project_uuid=%s' %
(reverse('ids_projects:add-sra', kwargs={'relationship': relationship}), project_uuid)
)
elif data_type == 'File':
if process_uuid is not None:
return HttpResponseRedirect('%s?process_uuid=%s' %
(reverse('ids_projects:file-select', kwargs={'relationship': relationship}), process_uuid)
)
elif specimen_uuid is not None:
return HttpResponseRedirect('%s?specimen_uuid=%s' %
(reverse('ids_projects:file-select', kwargs={'relationship': relationship}), specimen_uuid)
)
elif project_uuid is not None:
return HttpResponseRedirect('%s?project_uuid=%s' %
(reverse('ids_projects:file-select', kwargs={'relationship': relationship}), project_uuid)
)
def handle_webhook(request, hook_type, *args, **kwargs):
"""
Required parameters:
hook_type ['update_checksum'|'test_job']
UUID Unique IDS identifier for the data object to modify
checksum Calculated checksum value
Testing from command line:
curl -k --data 'UUID=2483901498122179046-242ac1111-0001-012&checksum=060a735c8f6240949ae7ac9fd8d22129' http://localhost:8000/webhook/update_checksum/
"""
if hook_type == 'update_checksum':
api_client = get_portal_api_client()
try:
logger.debug('profile: {}'.format(api_client.profiles.get()))
except Exception as e:
logger.error('bad client: %s', repr(e))
logger.debug('Webhook request type: %s, body: %s' % (hook_type, request.body))
if request.GET:
print "GET"
uuid = request.GET.get('UUID', None)
checksum = request.GET.get('checksum', None)
# last_checksum_update = request.GET.get('lastChecksumUpdated', None)
elif request.POST:
print "POST"
logger.debug(request.POST)
uuid = request.POST.get('UUID', None)
checksum = request.POST.get('checksum', None)
# last_checksum_update = request.POST.get('lastChecksumUpdated', None)
if uuid is None:
logger.exception('Missing UUID.')
return HttpResponse("Error\n")
if checksum is None:
logger.exception('Missing checksum.')
return HttpResponse("Error\n")
try:
data = Data(api_client=api_client, uuid=uuid)
logger.debug('Metadata for UUID %s: %s' % (uuid, data.value))
except Exception as e:
logger.exception('Invalid UUID ( %s ), Agave object not found. %s' % (uuid, repr(e)))
return HttpResponse("Error")
updated_time = datetime.datetime.now()
previous_checksum = data.value.get('checksum', None)
time_template = "%Y-%m-%dT%H:%M:%S"
if previous_checksum is None:
try:
data.value['checksum'] = checksum
data.value['lastChecksumUpdated'] = updated_time.strftime(time_template)
data.value['checkStatus'] = True
data.save()
logger.debug('New checksum saved for UUID: %s!' % uuid)
except Exception as e:
logger.exception('Checksum was not saved successfully. %s' % e)
return HttpResponse("Error")
elif previous_checksum == checksum:
try:
data.value['checksum'] = checksum
data.value['lastChecksumUpdated'] = updated_time.strftime(time_template)
data.value['checkStatus'] = True
data.save()
logger.debug('Checksum is identical, timestamp updated for UUID: %s!' % uuid)
except Exception as e:
logger.exception('Checksum was not saved successfully. %s' % e)
return HttpResponse("Error")
else:
try:
data.value['checksumConflict'] = checksum
data.value['lastChecksumUpdated'] = updated_time.strftime(time_template)
data.value['checkStatus'] = False
data.save()
logger.warning('Checksum is NOT consistent with previous for UUID: %s!' % uuid)
except Exception as e:
logger.exception('Checksum was not saved successfully. %s' % e)
return HttpResponse("Error")
return HttpResponse(uuid + ' ' + checksum + '\n')
# testing for calling job
elif hook_type == 'test_job':
uuid = '4544798190901268966-242ac1111-0001-012'
data = Data(uuid=uuid)
data.calculate_checksum()
return HttpResponse('Job submitted for uuid = %s!' % uuid)
else:
return HttpResponse('OK')