def irods_obj_getacls(path, verbose=False):
"""
This function returns a list of ACLs associated
with the input iRODS data object. Each ACL consists of
a 'user:access' pair, where access is the same
as that used in the ichmod command.
None is returned if an error occurred.
"""
if not path:
return None
acl_list = []
acl_query = "select DATA_ACCESS_NAME, DATA_ACCESS_USER_ID where DATA_NAME = '%s'"
output = run_iquest(acl_query % (path,), format='%s:%s', verbose=verbose)
if output == None:
return None
for line in output.splitlines():
access, user_id = line.split(':')
if access.startswith('read'):
access = 'read'
elif access.startswith('modify'):
access = 'write'
user_name = irods_id_to_user(user_id, verbose=verbose)
acl_list.append([user_name, access])
return acl_list
def irods_user_to_id(username, verbose=None):
"""
Look up a user in the iRODS user DB and return the
user identifier (a number). If the user isn't found,
return an empty string. If an error occurs, return None.
username should be in the form 'user#zone'
Note: this also works for looking up groups.
"""
if not username:
return None
user = username.split('#', 1)
if len(user) != 2:
if verbose:
print('irods_user_to_id: username should be of form "user#zone"')
return None
id_query = "select USER_ID where USER_NAME = '%s' and USER_ZONE = '%s'" % (user[0], user[1])
id = run_iquest(id_query, format='%s', verbose=verbose)
if id == None:
return None
elif not id:
# user not found
return ""
else:
# keep in string form, as this is what iRODS mostly works with
return id.rstrip('\n')
def get_irods_group_membership(zone):
"""
Retrieves the IDS users and groups from iRODS. Only group names starting
with 'ids-' are retrieved.
Input: if 'zone' is provided, its the name of the remote zone for iquest.
Returns: a dict where the key is the group name, and the value is a list
of users who are members of the group.
"""
query = "select USER_GROUP_NAME, USER_NAME where USER_GROUP_NAME like 'ids-%'"
output = run_iquest(query, format='%s:%s', zone=zone)
if output == None:
# some error occurred
return None
group_list = {}
for line in output.splitlines():
if line.startswith('Zone is'):
continue
group, user = line.split(':')
if not group == user:
if group in group_list:
group_list[group].append(user)
else:
group_list[group] = [ user, ]
elif group not in group_list:
group_list[group] = [] # empty group
return group_list
def get_resource_details(resource_name=None, verbose=False):
"""
This function will retrieve the details of all
the resources defined within the local zone.
If resource_name is provided, only the details
for that resource will be returned.
Returns a dict of dicts, where the key of the top-level
dict is the resource name, and the sub-dict contains the
resource details including: type, endpoint, comment,
and creation and modification timestamps. Will return
None if some error occurred.
"""
sep = '~_~'
query_fields = [
'RESC_NAME',
'RESC_ZONE_NAME',
'RESC_TYPE_NAME',
'RESC_CLASS_NAME',
'RESC_LOC',
'RESC_VAULT_PATH',
'RESC_STATUS',
'RESC_INFO',
'RESC_COMMENT',
'RESC_CREATE_TIME',
'RESC_MODIFY_TIME',
]
query_format = sep.join(['%s'] * len(query_fields))
query = 'select %s' % (','.join(query_fields))
if resource_name:
query = query + " where RESC_NAME = '%s'" % (resource_name,)
output = run_iquest(query, format=query_format, verbose=verbose)
if not output:
return None
resources = {}
for line in output.splitlines():
fields = line.split(sep)
resource = {
'zone_name': fields[1],
'type': fields[2],
'class': fields[3],
'server': fields[4],
'vault_path': fields[5],
'status': fields[6],
'info': fields[7],
'comment': fields[8],
'create_time': fields[9],
'modification_time': fields[10],
}
resources[fields[0]] = resource
return resources
def get_zone_list(verbose=False):
"""
This function retrieves a list of all the zones
within the IDS.
Returns a list sorted by zone name, or None if
some error occurred.
"""
output = run_iquest('select order(ZONE_NAME)',
format='%s', verbose=verbose)
if not output:
return None
return [zone.rstrip('\n') for zone in output.splitlines()]
def get_local_zone(verbose=False):
"""
This function retrieves the name of the local
zone using an iquest query.
Returns the name of the local zone, or None if
some error occurred.
"""
zname = run_iquest("select ZONE_NAME where ZONE_TYPE = 'local'",
format='%s', verbose=verbose)
if zname == None:
return None
return zname.rstrip('\n')
def get_resource_list(verbose=False):
"""
This function retrieves a list of all the resources
within the local zone.
Returns a list sorted by resource name, or None if
some error occurred.
"""
output = run_iquest('select order(RESC_NAME)',
format='%s', verbose=verbose)
if not output:
return None
return [resource.rstrip('\n') for resource in output.splitlines()]
def get_irods_group(groupname, verbose=False):
"""
Return the list of members of the provided group,
or the empty list if there are no members. If an
error occurs, return None.
"""
if not groupname:
return None
group_query = "select USER_NAME, USER_ZONE where USER_GROUP_NAME = '%s'"
output = run_iquest(group_query % (groupname,), format='%s#%s', verbose=verbose)
if output == None:
return None
return output.splitlines()
def get_zone_details(zone_name=None, verbose=False):
"""
This function will retrieve the details of all
the zones defined within the IDS. If zone_name
is provided, only the details for that zone will
be returned.
Returns a array of dicts with each array element
representing a zone, and the dict contains the
zone details including: name, type, endpoint, comment,
and creation and modification timestamps. Will return
None if some error occurred.
"""
sep = '~_~'
query_fields = [
'ZONE_NAME',
'ZONE_TYPE',
'ZONE_CONNECTION',
'ZONE_COMMENT',
'ZONE_CREATE_TIME',
'ZONE_MODIFY_TIME',
]
query_format = sep.join(['%s'] * len(query_fields))
query = 'select %s' % (','.join(query_fields))
if zone_name:
query = query + " where ZONE_NAME = '%s'" % (zone_name,)
output = run_iquest(query, format=query_format, verbose=verbose)
if output is None:
return None
zones = []
for line in output.splitlines():
fields = line.split(sep)
zone = {
'zone_name': fields[0],
'type': fields[1],
'connection': fields[2],
'comment': fields[3],
'create_time': fields[4],
'modification_time': fields[5],
}
zones.append(zone)
return zones
def irods_user_exists(username, verbose=False):
"""
Check if a particular user exists in iRODS. Returns
1 if yes, and 0 if no, and -1 if some error occurred.
"""
if not username:
return -1
user = username.split('#', 1)
if len(user) != 2:
if verbose:
print('irods_user_to_id: username should be of form "user#zone"')
return -1
user_query = "select count(USER_NAME) where USER_NAME = '%s' and USER_ZONE = '%s'"
exists = run_iquest(user_query % (user[0], user[1]), format='%s', verbose=verbose)
if exists == None:
return -1
else:
return int(exists)
def irods_obj_exists(obj, verbose=False):
"""
This function checks whether the provided
data object name 'obj' exists in the iRODS
namespace. Returns 1 if yes, and 0 if not,
and -1 if some error occurred during the lookup.
Note: a 0 return just means the path isn't a
data object. There could still be a collection
with the same path name.
"""
if not obj:
return -1
obj_query = "select count(DATA_NAME) where DATA_NAME = '%s'" % (obj,)
exists = run_iquest(obj_query, format='%s', verbose=verbose)
if exists == None:
return -1
return int(exists)
def irods_coll_exists(coll, verbose=False):
"""
This function checks whether the provided
collection name 'coll' exists in the iRODS
namespace. Returns 1 if yes, and 0 if not,
and -1 if some error occurred during the lookup.
Note: a 0 return just means the path isn't a
collection. There could still be a data object
with the same path name.
"""
if not coll:
return -1
coll_query = "select count(COLL_NAME) where COLL_NAME = '%s'" % (coll,)
exists = run_iquest(coll_query, format='%s', verbose=verbose)
if exists == None:
return -1
return int(exists)
def irods_id_to_user(id, zone=None, verbose=None):
"""
Look up a user id in the iRODS user DB and return the
user name. If the user isn't found, return an empty string.
If an error occurs, return None.
the username returned is in the form 'user#zone'
Note: this also works for looking up groups.
"""
if not id:
return None
if not zone:
zone = get_local_zone(verbose)
if not zone:
return None
# lookup user id in the cache first
if zone in user_id_cache:
if id in user_id_cache[zone]:
return user_id_cache[zone][id]
# no cache hit ... look it up
user_query = "select USER_NAME, USER_ZONE where USER_ID = '%s'" % (id,)
user = run_iquest(user_query, format='%s#%s', zone=zone, verbose=verbose)
if user == None:
return None
elif not user:
# user not found
return ""
else:
# keep in string form, as this is what iRODS mostly works with
user_name = user.rstrip('\n')
if zone not in user_id_cache:
user_id_cache[zone] = {}
user_id_cache[zone][id] = user_name
return user_name