def findCaries(imgNameInput):
print imgNameInput
if os.path.exists(imgNameInput):
inImg = readImage(imgNameInput)
outImg = segmentImage(inImg)
viewImage(outImg)
# raw_input('Press <Return> to continue')
# writeImage(imgNameOutput,binaryThrFiltered.GetOutput())
else:
print "Eingabedatei existiert nicht"
import time, argparse, imageIO, log
from gauss import gaussian_blur
from sobel import edge_detector
from laplacian import sharpening
parser = argparse.ArgumentParser()
parser.add_argument('--blur', action='store_true')
parser.add_argument('--edge', action='store_true')
parser.add_argument('--sharp', action='store_true')
parser.add_argument("input_file", help="The input image file.")
parser.add_argument("output_file", help="The output image file.")
args = parser.parse_args()
img = imageIO.readImage(args.input_file)
if img is not None:
startTime = time.time()
log.status("proccessing image")
if args.blur:
blurImage = gaussian_blur(img)
imageIO.writeImage(blurImage, args.output_file)
elif args.edge:
edgeImage = edge_detector(img)
imageIO.writeImage(edgeImage, args.output_file)
elif args.sharp:
sharpImage = sharpening(img)
imageIO.writeImage(sharpImage, args.output_file)
Display an image using an image viewer run in a separate thread.
The environment variable MED_BV_VIEWER_COMMAND specifies the
location of the itksnap command used for image display.
@param greyImage Either an image file name or an itk image instance.
@param segmentationImage Either an image file name or an itk image
instance corresponding to the segmentation result. Default: None.
@param comment Comment to be incorporated in temporary file name.
@param viewerCommand Full path to image viewer command.
Default: '/GB/itksnap/bin/itksnap'
"""
#
# create and start thread executing the __viewImage function
myThread = threading.Thread(target=__viewImage,
args= (greyImage, segmentationImage, comment, viewerCommand))
myThread.start()
if __name__ == '__main__':
greyImName = os.path.join('MRI_crop', 'MRIcrop-grey_orig.mhd')
segmentationImName = os.path.join('MRI_crop', 'MRIcrop-seg_orig.mhd')
viewImage(greyImName, segmentationImage=segmentationImName,
comment='ReadFromFile')
greyIm = imageIO.readImage(greyImName)
segmentationIm = imageIO.readImage(segmentationImName)
viewImage(greyIm, segmentationImage=segmentationIm,
comment='ConvertedFromImageReferences')
metaViewer = os.path.join(os.path.sep, 'GB', 'itk', 'bin', 'ImageViewer')
if os.path.isfile(metaViewer):
viewImage(greyIm, comment='AlternativeViewer', viewerCommand=metaViewer)
