def do_imagej(self, workspace, when=None):
if when == D_FIRST_IMAGE_SET:
choice = self.prepare_group_choice.value
command = self.prepare_group_command
macro = self.prepare_group_macro.value
d = self.pre_command_settings_dictionary
elif when == D_LAST_IMAGE_SET:
choice = self.post_group_choice.value
command = self.post_group_command
macro = self.post_group_macro.value
d = self.pre_command_settings_dictionary
else:
choice = self.command_or_macro.value
command = self.command
macro = self.macro.value
d = self.command_settings_dictionary
if choice == CM_COMMAND:
self.execute_advanced_command(workspace, command, d)
elif choice == CM_SCRIPT:
macro = workspace.measurements.apply_metadata(macro)
script_service = ij2.get_script_service(get_context())
factory = script_service.getByName(self.macro_language.value)
engine = factory.getScriptEngine()
engine.put("ImageJ", get_context())
result = engine.evalS(macro)
elif choice == CM_MACRO:
macro = workspace.measurements.apply_metadata(macro)
ijmacros.execute_macro(macro)
if choice != CM_NOTHING and (not cpprefs.get_headless()) and self.pause_before_proceeding:
import wx
wx.MessageBox("Please edit the image in ImageJ and hit OK to proceed", "Waiting for ImageJ")
def do_imagej(self, workspace, when=None):
if when == D_FIRST_IMAGE_SET:
choice = self.prepare_group_choice.value
command = self.prepare_group_command
macro = self.prepare_group_macro.value
d = self.pre_command_settings_dictionary
elif when == D_LAST_IMAGE_SET:
choice = self.post_group_choice.value
command = self.post_group_command
macro = self.post_group_macro.value
d = self.pre_command_settings_dictionary
else:
choice = self.command_or_macro.value
command = self.command
macro = self.macro.value
d = self.command_settings_dictionary
if choice == CM_COMMAND:
self.execute_advanced_command(workspace, command, d)
elif choice == CM_SCRIPT:
macro = workspace.measurements.apply_metadata(macro)
script_service = ij2.get_script_service(get_context())
factory = script_service.getByName(self.macro_language.value)
engine = factory.getScriptEngine()
engine.put("ImageJ", get_context())
result = engine.evalS(macro)
elif choice == CM_MACRO:
macro = workspace.measurements.apply_metadata(macro)
ijmacros.execute_macro(macro)
if (choice != CM_NOTHING and (not cpprefs.get_headless())
and self.pause_before_proceeding):
import wx
wx.MessageBox(
"Please edit the image in ImageJ and hit OK to proceed",
"Waiting for ImageJ")
def execute_macro(self, macro_text):
'''execute a macro in ImageJ
macro_text - the macro program to be run
'''
ijmacros.execute_macro(macro_text)
def execute_macro(self, macro_text):
'''execute a macro in ImageJ
macro_text - the macro program to be run
'''
ijmacros.execute_macro(macro_text)