def get_commands(self): '''returns a list of the available command strings''' return ijmacros.get_commands()
import cellprofiler.workspace as cpw import cellprofiler.modules.run_imagej as R run_tests = (sys.platform.startswith("win")) INPUT_IMAGE_NAME = "inputimage" OUTPUT_IMAGE_NAME = "outputimage" # # Test for presence of tubeness plugin # has_tubeness = False try: import imagej.macros as M commands = M.get_commands() M.get_plugin('features.Tubeness2_0') has_tubeness = True except: print "The Tubeness plugin isn't loaded - using a simplified pipeline" class TestRunImageJ(unittest.TestCase): def test_01_01_load_v1(self): data = r"""CellProfiler Pipeline: http://www.cellprofiler.org Version:1 SVNRevision:9954 RunImageJ:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:1|show_window:True|notes:\x5B\x5D] Command or macro?:Command Command\x3A:Sharpen Macro\x3A:run("Invert");
import cellprofiler.modules.run_imagej as R from bioformats import USE_IJ2 run_tests = (sys.platform.startswith("win") and not USE_IJ2) INPUT_IMAGE_NAME = "inputimage" OUTPUT_IMAGE_NAME = "outputimage" # # Test for presence of tubeness plugin # has_tubeness = False try: import imagej.macros as M commands = M.get_commands() M.get_plugin('features.Tubeness2_0') has_tubeness = True except: print "The Tubeness plugin isn't loaded - using a simplified pipeline" class TestRunImageJ(unittest.TestCase): def test_01_01_load_v1(self): data = r"""CellProfiler Pipeline: http://www.cellprofiler.org Version:1 SVNRevision:9954 RunImageJ:[module_num:1|svn_version:\'Unknown\'|variable_revision_number:1|show_window:True|notes:\x5B\x5D] Command or macro?:Command Command\x3A:Sharpen