def test_proper_example(self, insertions, exon_counts):
"""Tests example with two insertions, after exons 2 and 4."""
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 2
assert dropped == set()
def test_proper_example(self, insertions, exon_counts):
"""Tests example with two insertions, after exons 2 and 4."""
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 2
assert dropped == set()
def test_after_gene(self, insertions, exon_counts):
"""Tests dropping sample with an insertion after the gene"""
insertions[0] = insertions[0]._replace(position=3205801)
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 4
assert dropped == {'S1'}
def test_before_gene(self, insertions, exon_counts):
"""Tests dropping sample with an insertion before the gene"""
insertions[1] = insertions[1]._replace(position=3215652)
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 3
assert len(after) == 2
assert dropped == {'S2'}
def test_proper_example_df(self, insertions, exon_counts):
"""Tests same example, using dataframe input for insertions."""
insertion_df = Insertion.to_frame(insertions)
before, after, dropped = test.split_counts(
exon_counts, insertion_df, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 2
assert dropped == set()
def test_in_exon(self, insertions, exon_counts):
"""Tests insertion in fourth exon."""
insertions[0] = insertions[0]._replace(position=3207217)
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 1
assert dropped == set()
def test_after_gene(self, insertions, exon_counts):
"""Tests dropping sample with an insertion after the gene"""
insertions[0] = insertions[0]._replace(position=3205801)
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 4
assert dropped == {'S1'}
def test_before_gene(self, insertions, exon_counts):
"""Tests dropping sample with an insertion before the gene"""
insertions[1] = insertions[1]._replace(position=3215652)
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 3
assert len(after) == 2
assert dropped == {'S2'}
def test_proper_example_df(self, insertions, exon_counts):
"""Tests same example, using dataframe input for insertions."""
insertion_df = Insertion.to_frame(insertions)
before, after, dropped = test.split_counts(
exon_counts, insertion_df, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 2
assert dropped == set()
def test_in_exon(self, insertions, exon_counts):
"""Tests insertion in fourth exon."""
insertions[0] = insertions[0]._replace(position=3207217)
before, after, dropped = test.split_counts(
exon_counts, insertions, gene_id='ENSMUSG00000051951')
assert len(before) == 1
assert len(after) == 1
assert dropped == set()