def get_veracis_id(self):
"""Return the veracis_id of the sample this aliquot originated from.
"""
parent = self.aq_parent
while not ISample.providedBy(parent):
parent = self.aq_parent
return parent.veracis_id
def _get_parent_sample(context):
"""Get the sample associated with the current context.
"""
parent = context
while not ISample.providedBy(parent):
parent = parent.aq_parent
return parent
def veracis_id(self):
"""Return the veracis_id of the sample this aliquot originated from.
"""
parent = self.aq_parent
while not ISample.providedBy(parent):
parent = self.aq_parent
return parent.veracis_id
def get_UnivarFigure(self, aliquot, fignr):
sample = aliquot.aq_parent
while not ISample.providedBy(sample):
sample = sample.aq_parent
fn = join(self.path, 'Out', 'Figures', '%s_UnivarFigure_%s.png' %
(sample.id, fignr))
if exists(fn):
return fn
def get_ReportFigure(self, aliquot):
sample = aliquot.aq_parent
while not ISample.providedBy(sample):
sample = sample.aq_parent
fn = join(self.path, 'Out', 'Figures',
'%s_ReportFigure.png' % sample.id)
if exists(fn):
return fn
def get_sample_from_aliquot(self, aliquot):
parent = aliquot.aq_parent
while not (ISample.providedBy(parent)):
parent = parent.aq_parent
if ILIMSRoot.providedBy(parent):
msg = "Cannot find ISample parent of Aliquot: %s" % aliquot
raise RuntimeError(msg)
return parent
def get_parent_sample_from_aliquot(self, aliquot):
parent = aliquot.aq_parent
while not ISample.providedBy(parent):
parent = parent.aq_parent
return parent
def get_parent_sample_from_aliquot(self, aliquot):
parent = aliquot.aq_parent
while not ISample.providedBy(parent):
parent = parent.aq_parent
return parent