def test_parse_site_residue_only():
rp = ReachProcessor(None)
text = ['serine residue', 'serine', 'a serine site']
for t in text:
residue, site = rp._parse_site_text(t)
assert(residue == 'Serine')
assert(site is None)
def test_parse_site_text():
rp = ReachProcessor(None)
text = ['threonine 185', 'thr 185', 'thr-185', 'threonine residue 185', 'T185']
for t in text:
residue, site = rp._parse_site_text(t)
assert(residue == 'Threonine')
assert(site == '185')
def test_parse_site_residue_only():
rp = ReachProcessor(None)
text = ['serine residue', 'serine', 'a serine site']
for t in text:
residue, site = rp._parse_site_text(t)
assert (residue == 'Serine')
assert (site is None)
def test_parse_site_residue_only():
text = ['serine residue', 'serine', 'a serine site', 's', 'ser']
assert unicode_strs(text)
for t in text:
residue, site = ReachProcessor._parse_site_text(t)
assert unicode_strs((residue, site))
assert(residue == 'S')
assert(site is None)
def test_parse_site_residue_only():
text = ['serine residue', 'serine', 'a serine site', 's', 'ser']
assert unicode_strs(text)
for t in text:
residue, site = ReachProcessor._parse_site_text(t)
assert unicode_strs((residue, site))
assert (residue == 'S')
assert (site is None)
def test_parse_site_text():
text = ['threonine 185', 'thr 185', 'thr-185',
'threonine residue 185', 'T185']
assert unicode_strs(text)
for t in text:
residue, site = ReachProcessor._parse_site_text(t)
assert(residue == 'T')
assert(site == '185')
assert unicode_strs((residue, site))
def test_parse_site_text():
rp = ReachProcessor(None)
text = [
'threonine 185', 'thr 185', 'thr-185', 'threonine residue 185', 'T185'
]
for t in text:
residue, site = rp._parse_site_text(t)
assert (residue == 'Threonine')
assert (site == '185')
def test_parse_site_text():
text = [
'threonine 185', 'thr 185', 'thr-185', 'threonine residue 185', 'T185'
]
assert unicode_strs(text)
for t in text:
residue, site = ReachProcessor._parse_site_text(t)
assert (residue == 'T')
assert (site == '185')
assert unicode_strs((residue, site))
def test_parse_site_text_other_aa():
t = 'A431'
residue, site = ReachProcessor._parse_site_text(t)
assert(residue == 'A')
assert(site == '431')
assert(unicode_strs((residue, site)))
def test_parse_site_text_number_first():
t = '293T'
residue, site = ReachProcessor._parse_site_text(t)
assert(residue == 'T')
assert(site == '293')
assert(unicode_strs((residue, site)))
def test_parse_site_text_number():
t = '135'
residue, site = ReachProcessor._parse_site_text(t)
assert(residue is None)
assert(site == '135')
assert(unicode_strs(site))
def test_parse_site_text_other_aa():
t = 'A431'
residue, site = ReachProcessor._parse_site_text(t)
assert (residue == 'A')
assert (site == '431')
assert (unicode_strs((residue, site)))
def test_parse_site_text_number_first():
t = '293T'
residue, site = ReachProcessor._parse_site_text(t)
assert (residue == 'T')
assert (site == '293')
assert (unicode_strs((residue, site)))
def test_parse_site_text_number():
t = '135'
residue, site = ReachProcessor._parse_site_text(t)
assert (residue is None)
assert (site == '135')
assert (unicode_strs(site))
