def __init__(self,
statements=None,
summary_metadata=None,
ev_counts=None,
beliefs=None,
source_counts=None,
curation_dict=None,
title='INDRA Results',
db_rest_url=None,
sort_by='default',
custom_stats=None):
self.title = title
self.statements = [] if statements is None else statements
self.metadata = {} if summary_metadata is None \
else summary_metadata
self.ev_counts = get_available_ev_counts(self.statements) \
if ev_counts is None else standardize_counts(ev_counts)
self.beliefs = get_available_beliefs(self.statements) \
if not beliefs else standardize_counts(beliefs)
self.source_counts = get_available_source_counts(self.statements) \
if source_counts is None else standardize_counts(source_counts)
self.sort_by = sort_by
self.curation_dict = {} if curation_dict is None else curation_dict
self.db_rest_url = db_rest_url
self.model = None
self.custom_stats = [] if custom_stats is None else custom_stats
def __init__(self,
statements=None,
summary_metadata=None,
ev_counts=None,
beliefs=None,
source_counts=None,
curation_dict=None,
title='INDRA Results',
db_rest_url=None,
sort_by='default',
custom_stats=None,
custom_sources: Optional[SourceInfo] = None):
if custom_sources is not None:
custom_source_list = list(custom_sources)
else:
custom_source_list = None
self.custom_sources = custom_sources
self.title = title
self.statements = [] if statements is None else statements
self.metadata = {} if summary_metadata is None \
else summary_metadata
self.ev_counts = get_available_ev_counts(self.statements) \
if ev_counts is None else standardize_counts(ev_counts)
self.beliefs = get_available_beliefs(self.statements) \
if not beliefs else standardize_counts(beliefs)
self.source_counts = get_available_source_counts(self.statements,
custom_source_list) \
if source_counts is None else standardize_counts(source_counts)
self.available_sources = available_sources_stmts(self.statements,
custom_source_list) if \
source_counts is None else available_sources_src_counts(
source_counts, custom_source_list)
self.sort_by = sort_by
self.curation_dict = {} if curation_dict is None else curation_dict
self.db_rest_url = db_rest_url
self.model = None
self.custom_stats = [] if custom_stats is None else custom_stats
self.source_colors: Optional[SourceColors] = \
_source_info_to_source_colors(custom_sources)
def __init__(self,
statements=None,
summary_metadata=None,
ev_totals=None,
ev_counts=None,
source_counts=None,
curation_dict=None,
title='INDRA Results',
db_rest_url=None):
self.title = title
self.statements = [] if statements is None else statements
self.metadata = {} if summary_metadata is None \
else summary_metadata
# If the deprecated parameter is used, we make sure we take it
if not ev_counts and ev_totals:
ev_counts = ev_totals
self.ev_counts = get_available_ev_counts(self.statements) \
if ev_counts is None else standardize_counts(ev_counts)
self.source_counts = get_available_source_counts(self.statements) \
if source_counts is None else standardize_counts(source_counts)
self.curation_dict = {} if curation_dict is None else curation_dict
self.db_rest_url = db_rest_url
self.model = None
def _compile_statements(self):
"""Generate statements from the jsons."""
self.statements = stmts_from_json(self.__statement_jsons.values())
if self.use_obtained_counts:
self.__source_counts = get_available_source_counts(self.statements)
self.__evidence_counts = get_available_ev_counts(self.statements)