def get_test_db_with_pubmed_content(with_pm=False):
"Populate the database with sample content from pubmed."
db = get_temp_db(clear=True)
pm = Pubmed(ftp_url=get_test_ftp_url(), local=True)
pm.populate(db)
if with_pm:
return db, pm
else:
return db
def test_multiple_pmids():
"Test that pre-existing pmids are correctly handled."
db = get_temp_db()
med = Pubmed(ftp_url=get_test_ftp_url(), local=True)
med.populate(db)
num_refs = len(db.select_all('text_ref'))
med.populate(db)
assert len(db.select_all('text_ref')) == num_refs,\
"Duplicate pmids allowed to be submitted.."
return