def test_type(self):
no_integrase = Integron("foo")
self.assertIsNone(no_integrase.type())
just_one_integrase = Integron("just_one_integrase")
just_one_integrase.add_integrase(10,
100,
'foo',
1,
1e-2,
"intersection_tyr_intI")
self.assertEqual(just_one_integrase.type(), "In0")
just_one_attC = Integron("just_one_attC")
just_one_attC.add_attC(10,
100,
1,
1e-2,
"intersection_tyr_intI")
self.assertEqual(just_one_attC.type(), "attC0")
one_integrase_one_attC = Integron("one_integrase_one_attC")
one_integrase_one_attC.add_integrase(10,
100,
'foo',
1,
1e-2,
"intersection_tyr_intI")
one_integrase_one_attC.add_attC(10,
100,
1,
1e-2,
"intersection_tyr_intI")
self.assertEqual(one_integrase_one_attC.type(), "complete")
def test_type(self):
no_integrase = Integron("foo")
self.assertIsNone(no_integrase.type())
just_one_integrase = Integron("just_one_integrase")
just_one_integrase.add_integrase(10, 100, "foo", 1, 1e-2, "intersection_tyr_intI")
self.assertEqual(just_one_integrase.type(), "In0")
just_one_attC = Integron("just_one_attC")
just_one_attC.add_attC(10, 100, 1, 1e-2, "intersection_tyr_intI")
self.assertEqual(just_one_attC.type(), "attC0")
one_integrase_one_attC = Integron("one_integrase_one_attC")
one_integrase_one_attC.add_integrase(10, 100, "foo", 1, 1e-2, "intersection_tyr_intI")
one_integrase_one_attC.add_attC(10, 100, 1, 1e-2, "intersection_tyr_intI")
self.assertEqual(one_integrase_one_attC.type(), "complete")
