def setUp(self):
# idb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_intradb.cfg')
cdb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_cdb.cfg')
# self.idb = HcpInterface(config=idb_config_file)
self.cdb = HcpInterface(config=cdb_config_file)
def setUp(self):
idb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_intradb.cfg')
# cdb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_cdb.cfg')
self.idb = HcpInterface(config=idb_config_file)
# self.cdb = HcpInterface(config=cdb_config_file)
self.idb.project = 'HCP_Phase2'
self.idb.subject_label = '100307'
self.idb.session_label = '100307_strc'
self.idb.scan_id = '19'
def setUp(self):
# idb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_intradb.cfg')
cdb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_cdb.cfg')
# self.idb = HcpInterface(config=idb_config_file)
self.cdb = HcpInterface(config=cdb_config_file)
def setUp(self):
idb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_intradb.cfg')
# cdb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_cdb.cfg')
self.idb = HcpInterface(config=idb_config_file)
# self.cdb = HcpInterface(config=cdb_config_file)
self.idb.subject_label = '100307'
self.idb.session_label = '100307_strc'
self.idb.scan_id = '19'
class TestIDBInterface(unittest.TestCase):
def setUp(self):
idb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_intradb.cfg')
# cdb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_cdb.cfg')
self.idb = HcpInterface(config=idb_config_file)
# self.cdb = HcpInterface(config=cdb_config_file)
self.idb.subject_label = '100307'
self.idb.session_label = '100307_strc'
self.idb.scan_id = '19'
def tearDown(self):
pass
## Json Tests
def test_getJson(self):
json_obj = self.idb.getJson('/REST/projects')
project_list = [item.get('ID') for item in json_obj]
self.assertTrue(self.idb.project in project_list)
@unittest.expectedFailure
def test_getSubjectJson(self):
# sub_json = self.cdb.getSubjectJson('100408')
self.assertTrue(False)
@unittest.expectedFailure
def test_getSessionJson(self):
self.assertTrue(False)
def test_getSessions_project(self):
sessions = self.idb.getSessions('HCP_Phase2')
session_labels = [s.get('label') for s in sessions]
self.assertTrue(len(session_labels) > 100)
def test_getSessions_all(self):
sessions = self.idb.getSessions()
session_labels = [s.get('label') for s in sessions]
self.assertTrue(len(session_labels) > 100)
def test_getSubjectSessions(self):
sessions = self.idb.getSubjectSessions()
session_labels = [s.get('label') for s in sessions]
self.assertTrue('100307_strc' in session_labels)
## Xml Tests
def test_getXml(self):
uri = '/REST/projects/'+self.idb.project+ \
'/subjects/100307/experiments/100307_strc/scans/10'
xml = self.idb.getXml(uri)
self.assertTrue('100307_strc' in xml)
def test_getScanXmlElement(self):
dbScanID = self.idb.getScanXmlElement('xnat:dbID')
self.assertTrue(dbScanID == '103')
@unittest.expectedFailure
def test_getSubjectXmlElement(self):
date = self.idb.getSubjectXmlElement('xnat:age')
self.assertTrue(date == '26')
def test_getSessionXmlElement(self):
date = self.idb.getSessionXmlElement('xnat:date')
self.assertTrue(date == '2012-08-23')
## General Tests
# def test_getHeaderField(self):
# uri = "/REST/projects"
# server = self.cdb.getHeaderField(uri, 'Server')
# self.assertTrue(server == 'Apache')
## Convenience Method Tests
def test_getSessionId(self):
"""
Testing two sessions since json object returned isn't always the same
"""
# 100307_strc session label
# sessionIdA = self.idb.getSessionId()
# print sessionIdA
# self.idb.session_label = '705341_strc'
# sessionIdB = self.idb.getSessionId()
# print sessionIdB
self.idb.project = 'NKI'
self.idb.session_label = '0142673'
sessionIdC = self.idb.getSessionId()
# print sessionIdC
self.assertTrue(sessionIdC == 'HCPIntradb_E36546')
# self.assertTrue(sessionIdA == 'HCPIntradb_E04465'
# and sessionIdB == 'HCPIntradb_E15574'
# and sessionIdC == 'HCPIntradb_E36546')
def test_getSubjectId(self):
subID = self.idb.getSubjectId()
self.assertTrue(subID == 'HCPIntradb_S01642')
def test_getSessionScans(self):
scans = self.idb.getSessionScans()
self.assertTrue(scans[0].get('ID') == '1')
def test_getSessionScanIds(self):
ids = self.idb.getSessionScanIds()
self.assertTrue(ids.__len__() > 5)
def test_getSessionSubject(self):
self.idb.project = 'PDSIII'
self.idb.session_label = '151110_L120' # Works
sub1 = self.idb.getSessionSubject()
self.idb.session_label = '151021_L258' # Works
sub2 = self.idb.getSessionSubject()
self.idb.project = 'DMC_Phase1a' # Doesn't
self.idb.session_label = 'SK105_TEST'
sub3 = self.idb.getSessionSubject()
print sub3
self.assertTrue(sub1 == 'L120'
and sub2 == 'L258'
and sub3 == 'Sk105')
def test_experimentExists(self):
self.assertTrue(self.idb.experimentExists() and not
self.idb.experimentExists('asdf'))
def test_getExperiments(self):
experiments = self.idb.getExperiments(project='HCP_Phase2',
xsi='xnat:mrSessiondata')
self.assertTrue(len(experiments) > 10)
class TestCDBInterface(unittest.TestCase):
def setUp(self):
# idb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_intradb.cfg')
cdb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_cdb.cfg')
# self.idb = HcpInterface(config=idb_config_file)
self.cdb = HcpInterface(config=cdb_config_file)
# self.idb.subject_label = '100307'
# self.idb.session_label = '100307_strc'
# self.idb.scan_id = '19'
def tearDown(self):
pass
## Json Tests
# def test_getJson(self):
# json_obj = self.idb.getJson('/REST/projects')
# project_list = [item.get('ID') for item in json_obj]
# self.assertTrue(self.idb.project in project_list)
@unittest.expectedFailure
def test_getSubjectJson(self):
# sub_json = self.cdb.getSubjectJson('100408')
self.assertTrue(False)
@unittest.expectedFailure
def test_getSessionJson(self):
self.assertTrue(False)
# def test_getSessions_project(self):
# sessions = self.idb.getSessions('HCP_Phase2')
# session_labels = [s.get('label') for s in sessions]
# self.assertTrue(len(session_labels) > 100)
# def test_getSessions_all(self):
# sessions = self.idb.getSessions()
# session_labels = [s.get('label') for s in sessions]
# self.assertTrue(len(session_labels) > 100)
# def test_getSubjectSessions(self):
# sessions = self.idb.getSubjectSessions()
# session_labels = [s.get('label') for s in sessions]
# self.assertTrue('100307_strc' in session_labels)
# ## Xml Tests
# def test_getXml(self):
# uri = '/REST/projects/'+self.idb.project+ \
# '/subjects/100307/experiments/100307_strc/scans/10'
# xml = self.idb.getXml(uri)
# self.assertTrue('100307_strc' in xml)
# def test_getScanXmlElement(self):
# dbScanID = self.idb.getScanXmlElement('xnat:dbID')
# self.assertTrue(dbScanID == '103')
# @unittest.expectedFailure
# def test_getSubjectXmlElement(self):
# date = self.idb.getSubjectXmlElement('xnat:age')
# self.assertTrue(date == '26')
# def test_getSessionXmlElement(self):
# date = self.idb.getSessionXmlElement('xnat:date')
# self.assertTrue(date == '2012-08-23')
## General Tests
def test_getHeaderField(self):
uri = "/REST/projects"
server = self.cdb.getHeaderField(uri, 'Server')
self.assertTrue(server == 'Apache')
class TestIDBInterface(unittest.TestCase):
def setUp(self):
idb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_intradb.cfg')
# cdb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_cdb.cfg')
self.idb = HcpInterface(config=idb_config_file)
# self.cdb = HcpInterface(config=cdb_config_file)
self.idb.project = 'HCP_Phase2'
self.idb.subject_label = '100307'
self.idb.session_label = '100307_strc'
self.idb.scan_id = '19'
def tearDown(self):
pass
## Json Tests
def test_getJson(self):
json_obj = self.idb.getJson('/REST/projects')
project_list = [item.get('ID') for item in json_obj]
self.assertTrue(self.idb.project in project_list)
@unittest.expectedFailure
def test_getSubjectJson(self):
# sub_json = self.cdb.getSubjectJson('100408')
self.assertTrue(False)
@unittest.expectedFailure
def test_getSessionJson(self):
self.assertTrue(False)
def test_getSessions_project(self):
sessions = self.idb.getSessions('HCP_Phase2')
session_labels = [s.get('label') for s in sessions]
self.assertTrue(len(session_labels) > 100)
def test_getSessions_all(self):
sessions = self.idb.getSessions()
session_labels = [s.get('label') for s in sessions]
self.assertTrue(len(session_labels) > 100)
def test_getSubjectSessions(self):
sessions = self.idb.getSubjectSessions()
session_labels = [s.get('label') for s in sessions]
self.assertTrue('100307_strc' in session_labels)
## Xml Tests
def test_getXml(self):
uri = '/REST/projects/'+self.idb.project+ \
'/subjects/100307/experiments/100307_strc/scans/10'
xml = self.idb.getXml(uri)
self.assertTrue('100307_strc' in xml)
def test_getScanXmlElement(self):
dbScanID = self.idb.getScanXmlElement('xnat:dbID')
self.assertTrue(dbScanID == '103')
@unittest.expectedFailure
def test_getSubjectXmlElement(self):
date = self.idb.getSubjectXmlElement('xnat:age')
self.assertTrue(date == '26')
def test_getSessionXmlElement(self):
date = self.idb.getSessionXmlElement('xnat:date')
self.assertTrue(date == '2012-08-23')
## General Tests
# def test_getHeaderField(self):
# uri = "/REST/projects"
# server = self.cdb.getHeaderField(uri, 'Server')
# self.assertTrue(server == 'Apache')
## Convenience Method Tests
def test_getSessionId(self):
"""
Testing two sessions since json object returned isn't always the same
"""
# 100307_strc session label
# sessionIdA = self.idb.getSessionId()
# print sessionIdA
# self.idb.session_label = '705341_strc'
# sessionIdB = self.idb.getSessionId()
# print sessionIdB
self.idb.project = 'NKI'
self.idb.session_label = '0142673'
sessionIdC = self.idb.getSessionId()
# print sessionIdC
self.assertTrue(sessionIdC == 'HCPIntradb_E36546')
# self.assertTrue(sessionIdA == 'HCPIntradb_E04465'
# and sessionIdB == 'HCPIntradb_E15574'
# and sessionIdC == 'HCPIntradb_E36546')
def test_getSubjectId(self):
subID = self.idb.getSubjectId()
self.assertTrue(subID == 'HCPIntradb_S01642')
def test_getSessionScans(self):
scans = self.idb.getSessionScans()
self.assertTrue(scans[0].get('ID') == '1')
def test_getSessionScanIds(self):
ids = self.idb.getSessionScanIds()
self.assertTrue(ids.__len__() > 5)
def test_getSessionSubject(self):
self.idb.project = 'CCF_BCP_ITK'
self.idb.session_label = 'NCBCP040221-v01-1-42mo-20170301'
sub = self.idb.getSessionSubject()
self.assertTrue(sub == 'NCBCP040221')
self.idb.project = 'PDSIII'
self.idb.session_label = '151110_L120' # Works
sub1 = self.idb.getSessionSubject()
self.idb.session_label = '151021_L258' # Works
sub2 = self.idb.getSessionSubject()
self.idb.project = 'DMC_Phase1a' # Doesn't
self.idb.session_label = 'SK105_TEST'
sub3 = self.idb.getSessionSubject()
self.idb.project = 'CCF_HCA_ITK'
self.idb.session_label = 'HCA6290368_V1_A'
sub4 = self.idb.getSessionSubject()
print sub4
self.assertTrue(sub1 == 'L120' and sub2 == 'L258' and sub3 == 'Sk105'
and sub4 == 'HCA6290368')
def test_experimentExists(self):
self.assertTrue(self.idb.experimentExists()
and not self.idb.experimentExists('asdf'))
def test_getExperiments(self):
experiments = self.idb.getExperiments(project='HCP_Phase2',
xsi='xnat:mrSessiondata')
self.assertTrue(len(experiments) > 10)
class TestCDBInterface(unittest.TestCase):
def setUp(self):
# idb_config_file = os.path.join(os.path.expanduser('~'),
# '.hcpxnat_intradb.cfg')
cdb_config_file = os.path.join(os.path.expanduser('~'),
'.hcpxnat_cdb.cfg')
# self.idb = HcpInterface(config=idb_config_file)
self.cdb = HcpInterface(config=cdb_config_file)
# self.idb.subject_label = '100307'
# self.idb.session_label = '100307_strc'
# self.idb.scan_id = '19'
def tearDown(self):
pass
## Json Tests
# def test_getJson(self):
# json_obj = self.idb.getJson('/REST/projects')
# project_list = [item.get('ID') for item in json_obj]
# self.assertTrue(self.idb.project in project_list)
@unittest.expectedFailure
def test_getSubjectJson(self):
# sub_json = self.cdb.getSubjectJson('100408')
self.assertTrue(False)
@unittest.expectedFailure
def test_getSessionJson(self):
self.assertTrue(False)
# def test_getSessions_project(self):
# sessions = self.idb.getSessions('HCP_Phase2')
# session_labels = [s.get('label') for s in sessions]
# self.assertTrue(len(session_labels) > 100)
# def test_getSessions_all(self):
# sessions = self.idb.getSessions()
# session_labels = [s.get('label') for s in sessions]
# self.assertTrue(len(session_labels) > 100)
# def test_getSubjectSessions(self):
# sessions = self.idb.getSubjectSessions()
# session_labels = [s.get('label') for s in sessions]
# self.assertTrue('100307_strc' in session_labels)
# ## Xml Tests
# def test_getXml(self):
# uri = '/REST/projects/'+self.idb.project+ \
# '/subjects/100307/experiments/100307_strc/scans/10'
# xml = self.idb.getXml(uri)
# self.assertTrue('100307_strc' in xml)
# def test_getScanXmlElement(self):
# dbScanID = self.idb.getScanXmlElement('xnat:dbID')
# self.assertTrue(dbScanID == '103')
# @unittest.expectedFailure
# def test_getSubjectXmlElement(self):
# date = self.idb.getSubjectXmlElement('xnat:age')
# self.assertTrue(date == '26')
# def test_getSessionXmlElement(self):
# date = self.idb.getSessionXmlElement('xnat:date')
# self.assertTrue(date == '2012-08-23')
## General Tests
def test_getHeaderField(self):
uri = "/REST/projects"
server = self.cdb.getHeaderField(uri, 'Server')
self.assertTrue(server == 'Apache')
