Python DVIDRemote.get_channel Exemples

Exemple #1

import intern
from intern.remote.boss import BossRemote
from intern.resource.boss.resource import ChannelResource
from intern.remote.dvid import DVIDRemote
import matplotlib.pyplot as plt
import numpy as np

#DVID Data fetch:
dvid = DVIDRemote({
	"protocol": "http",
	"host": "localhost:8000",
	})
volumeD = dvid.get_cutout(
	dvid.get_channel("3ca15f84b1ee4fb780fef94c5771ffe6","dyer15_3_maskim"),0,
	[1287,1387],[1200,1300],[390,490]
	)

#Printing volumes:
print("Dvid volume: ")
print(volumeD)

#Graphing Dvid:
imgplot = plt.imshow(volumeD[3,:,:], cmap = "gray")
plt.show()

Exemple #2

Fichier : Boss_Dvid_Download.py Projet : dxenes1/intern

})
volumeB = boss.get_cutout(
    boss.get_channel("em", "pinky40", "v7"),
    1,
    [10000, 10500],
    [10000, 10500],
    [500, 550],
)

#DVID Data fetch:
dvid = DVIDRemote({
    "protocol": "http",
    "host": "localhost:8000",
})
volumeD = dvid.get_cutout(
    dvid.get_channel("5cc94d532799484cb01788fcdb7cd9f0", "grayscale"), 0,
    [2300, 4600], [2300, 4600], [1380, 1390])

#Printing volumes:
print("Dvid volume: ")
print(volumeD)
print("Boss volume: ")
print(volumeB)

#Graphing Boss:
imgplot = plt.imshow(volumeB[0, :, :], cmap="gray")
one = volumeB[0, :, :]
one_size = one.size
plt.show()

#Graphing Dvid:

Exemple #3

Fichier : (3)dvid_Download.py Projet : dxenes1/intern

import intern
from intern.remote.dvid import DVIDRemote
import matplotlib.pyplot as plt

#DVID Data fetch:
dvid = DVIDRemote({
    "protocol": "http",
    "host": "localhost:8000",
})

chan = "UUID/ChannelName"
volumeD = dvid.get_cutout(dvid.get_channel(chan), 0, [0, 2560], [0, 2560],
                          [390, 392])
print(volumeD)

imgplot = plt.imshow(volumeD[0, :, :], cmap="gray")
plt.show()

Exemple #4

Fichier : Dvid_X_Down.py Projet : aplmicrons/intern

import intern
from intern.remote.dvid import DVIDRemote

from PIL import Image
import numpy as np
import os
import matplotlib.pyplot as plt

UUID = "30eb"

#Declare DVIDRemote
dvid = DVIDRemote({
    "protocol": "http",
    "host": "localhost:8000",
})

volumeD = dvid.get_cutout(
    dvid.get_channel(UUID, "dyer15_3_maskim_DUmmy", "dyer15_3_maskim_DUmmy"),
    0, [0, 2560], [0, 2560], [290, 292])
print(volumeD)
imgplot = plt.imshow(volumeD[0, :, :], cmap='gray')
plt.show()

Exemple #5

Fichier : Boss_Down_Dvid_Upload.py Projet : dxenes1/intern

    [10000, 10200],
    [10000, 10200],
    [501, 502],
)

#UPLOAD TO DVID REPOSITORY
dvid = DVIDRemote({
    "protocol": "http",
    "host": "localhost:8000",
})

chan_setup = dvid.ChannelResource('pinky40', 'BossData RemoteTest',
                                  'Data uploaded from Boss to dvid')
proj = dvid.create_project(chan_setup)
UUID = chan_setup.split("/")
UUID = UUID[0]

xrang = [0, 32]
yrang = [0, 32]
zrang = [32, 64]

volume = dvid.create_cutout(proj, xrang, yrang, zrang, volumeB)

#Check DVID Data:
volumeD = dvid.get_cutout(dvid.get_channel(UUID, "pinky40", "Medulla"), 0,
                          [0, 200], [0, 200], [32, 33])
print(volumeD)

imgplot = plt.imshow(volumeD[:, :, 0], cmap="gray")
plt.show()

Exemple #6

    boss.get_channel("em", "pinky40", "v7"), 2,
    [10000, 10200], [10000, 10200], [501, 502],
)

#UPLOAD TO DVID REPOSITORY
dvid = DVIDRemote({
	"protocol": "http",
	"host": "localhost:8000",
    })

chan_setup = dvid.ChannelResource('pinky40','BossData RemoteTest', 'Data uploaded from Boss to dvid')
proj = dvid.create_project(chan_setup)
UUID = chan_setup.split("/")
UUID = UUID[0]

xrang = [0, 32]
yrang = [0, 32]
zrang = [32,64]

volume = dvid.create_cutout(proj,xrang,yrang,zrang,volumeB)

#Check DVID Data:
volumeD = dvid.get_cutout(
	dvid.get_channel(UUID,"pinky40","Medulla"), 0,
	[0,200],[0,200],[32,33]
	)
print(volumeD)

imgplot = plt.imshow(volumeD[:,:,0], cmap = "gray")
plt.show()