def get_publishers(
self,
attribute=None,
journal=None,
):
""" Returns a list of the publishers if a publisher search was made or
an empty list.
If a journal is defined, it returns the associated publisher
for this Journal or None. A journal definition makes the functions
to query again if the publisher isn't found in the xml or cache.
Note: If you define a journal, you must have searched for it first.
If an attribute is defined, returns only this attribute from
every publisher
"""
if self.xml['header']['outcome'] == 'notFound' \
or self.xml['header']['outcome'] == 'failed':
return None
if self.xml['header']['outcome'] == 'singleJournal':
return self.xml['publishers']['publisher']
if self.xml['header']['outcome'] == 'uniqueZetoc':
# the Publisher has not yet been indexed by RoMEO
return None
if journal is not None:
# search the cache for matches
publisher_key = cache.get("journal-publisher:" + journal.lower())
if publisher_key is not None:
return cache.get(publisher_key)
# Query again sherpa romeo db to get the publisher
s = SherpaRomeoSearch()
issn = self.get_journals(attribute='issn')[0]
if issn is not None:
s.search_issn(issn)
return s.parser.get_publishers()
else:
return None
publishers = list()
if self.xml['header']['outcome'] == 'publisherFound':
if self.xml['header']['numhits'] == '1':
p = self.xml['publishers']['publisher']
if attribute is None:
publishers.append(p)
else:
if p[attribute] is None:
return []
publishers.append(p[attribute])
else:
for p in self.xml['publishers']['publisher']:
if attribute is None:
publishers.append(p)
else:
publishers.append(p[attribute])
return publishers
def _runtime_vars_init(self):
""" Initializes user_id, deposition type, uuid and form_type
"""
self.user_id = current_user.get_id()
if self.deposition_type is None:
self.runtime_deposition_type = cache.get(
str(self.user_id) + ":current_deposition_type")
else:
self.runtime_deposition_type = None
# The uuid is always defined on runtime
self.uuid = cache.get(str(self.user_id) + ":current_uuid")
if self.uuid is not None and self.form_type is None:
webdeposit_draft_query = \
db.session.query(WebDepositDraft).\
join(Workflow).\
filter(Workflow.user_id == self.user_id,
WebDepositDraft.uuid == self.uuid)
# get the draft with the max step
webdeposit_draft = max(webdeposit_draft_query.all(),
key=lambda w: w.step)
self.runtime_form_type = webdeposit_draft.form_type
else:
self.runtime_form_type = None
def _login(self, uid, force=False):
"""
Get account information about currently logged user from database.
Should raise an exception when session.uid is not valid User.id.
"""
data = cache.get(self.get_key())
if not force and data is not None:
return data
from invenio.websession_model import User
data = {}
try:
user = User.query.get(uid)
data['id'] = data['uid'] = user.id or -1
data['nickname'] = user.nickname or ''
data['email'] = user.email or ''
data['note'] = user.note or ''
data.update(user.settings or {})
data['settings'] = user.settings or {}
data['guest'] = str(int(user.guest)) # '1' or '0'
self.modified = True
except:
data = self._create_guest()
return data
def curate():
"""
Index page with uploader and list of existing depositions
"""
action = request.values.get('action')
usercollection_id = request.values.get('collection')
recid = request.values.get('recid', 0, type=int)
# Allowed actions
if action not in ['accept', 'reject', 'remove']:
abort(400)
# Check recid
if not recid:
abort(400)
recid = int(recid)
# Does collection exists
u = UserCollection.query.filter_by(id=usercollection_id).first()
if not u:
abort(400)
# Check permission to perform action on this record
# - Accept and reject is done by community owner
# - Remove is done by record owner
if action in ['accept', 'reject', ]:
if u.id_user != current_user.get_id():
abort(403)
elif action == 'remove':
try:
email = get_fieldvalues(recid, '8560_f')[0]
if email != current_user['email']:
abort(403)
# User not allowed to remove from the zenodo user collection
if u.id == 'zenodo':
abort(403)
except (IndexError, KeyError):
abort(403)
# Prevent double requests (i.e. give bibupload a chance to make the change)
key = "usercoll_curate:%s_%s" % (usercollection_id, recid)
cache_action = cache.get(key)
if cache_action == action or cache_action in ['reject', 'remove']:
return jsonify({'status': 'success', 'cache': 1})
elif cache_action:
# Operation under way, but the same action
return jsonify({'status': 'failure', 'cache': 1})
if action == "accept":
res = u.accept_record(recid)
elif action == "reject" or action == "remove":
res = u.reject_record(recid)
if res:
# Set 5 min cache to allow bibupload/webcoll to finish
cache.set(key, action, timeout=5*60)
return jsonify({'status': 'success', 'cache': 0})
else:
return jsonify({'status': 'failure', 'cache': 0})
class ZenodoExtension(Extension):
"""
Temporary extension (let's see how long it will stay ;-).
This extension is made until a pull-request has been integrated in the
main Flask-Cache branch, so that generated cache keys are stable and
predictable instead of based on filename and line numbers.
"""
tags = set(['zenodocache'])
def parse(self, parser):
lineno = parser.stream.next().lineno
# Parse timeout
args = [parser.parse_expression()]
# Parse fragment name
parser.stream.skip_if('comma')
args.append(parser.parse_expression())
# Parse vary_on parameters
vary_on = []
while parser.stream.skip_if('comma'):
vary_on.append(parser.parse_expression())
if vary_on:
args.append(nodes.List(vary_on))
else:
args.append(nodes.Const([]))
body = parser.parse_statements(['name:endcache'], drop_needle=True)
return nodes.CallBlock(self.call_method('_cache', args),
[], [], body).set_lineno(lineno)
def _cache(self, timeout, fragment_name, vary_on, caller):
try:
cache = getattr(self.environment, JINJA_CACHE_ATTR_NAME)
except AttributeError, e:
raise e
key = make_template_fragment_key(fragment_name, vary_on=vary_on)
# Delete key if timeout is 'del'
if timeout == "del":
cache.delete(key)
return caller()
rv = cache.get(key)
if rv is None:
rv = caller()
cache.set(key, rv, timeout)
return rv
def parse_url(self, url):
self.url = url
#example
#url = 'http://www.sherpa.ac.uk/romeo/api29.php?jtitle=Annals%20of%20Physics'
found_journal = url.find("jtitle=")
found_publisher = url.find("pub=")
if found_journal != -1:
self.search_type = "journal_search"
self.query = url[found_journal + 7:(len(url) - 15)]
elif found_publisher != -1:
self.search_type = "publisher_search"
found_publisher = url.find("pub=")
self.query = url[found_publisher + 4:len(url)]
else:
self.search_type = "issn_search"
found_publisher = url.find("issn=")
self.query = url[found_publisher + 4:len(url)]
cached_xml = cache.get(self.search_type + ":" + self.query.lower())
if cached_xml is None:
try:
self.data = urllib2.urlopen(url).read()
except urllib2.HTTPError:
self.error = True
return
try:
root = ElementTree.XML(self.data)
except ParseError:
self.error = True
return
self.xml = XmlDictConfig(root)
outcome = self.xml['header']['outcome']
if outcome != 'failed' and outcome != 'notFound':
cache.set(self.search_type + ":" + self.query.lower(),
self.xml, 999999999999)
else:
self.xml = cached_xml
#self.data = cached_xml
#root = ElementTree.XML(self.data)
#self.xml = XmlDictConfig(root)
if self.xml['header']['outcome'] == 'failed':
self.error = True
self.error_message = self.xml['header']['message']
self.parsed = True
self._cache_parsed_xml()
def search_publisher(self, query):
"""
Search for Publishers
query: the query to be made
returns a list with publisher names
"""
# Search first for exact matches in cache
cached_publisher = cache.get("publisher:" + query.lower())
if cached_publisher is not None:
self.parser.set_single_item(publisher=cached_publisher, )
return cached_publisher['name']
cleanquery = query.replace(" ", "+")
url = "http://www.sherpa.ac.uk/romeo/api29.php?pub=" + cleanquery
self.parser.parse_url(url)
self.error = self.parser.error
self.error_message = self.parser.error_message
if not self.error:
return self.parser.get_publishers(attribute='name')
def get_preingested_form_data(user_id, uuid=None, key=None, cached_data=False):
def get_preingested_data(key):
def getter(json):
if 'pop_obj' in json:
if key is None:
return json['pop_obj']
else:
return json['pop_obj'][key]
else:
return {}
return getter
if cached_data:
return cache.get(str(user_id) + ':cached_form_data')
try:
return Workflow.get_extra_data(user_id,
uuid=uuid,
getter=get_preingested_data(key))
except NoResultFound:
return None
def search_journal(self, query, query_type='contains'):
"""
Search for Journals
query: the query to be made
query_type: it must be 'contains'(default), 'exact' or 'start'
returns a list with the specific journal titles or empty list
"""
if query_type is 'exact':
# Search first for exact matches in cache
cached_journal = cache.get("journal:" + query.lower())
if cached_journal is not None:
self.parser.set_single_item(journal=cached_journal)
return cached_journal['jtitle']
cleanquery = query.replace(" ", "+")
url = "http://www.sherpa.ac.uk/romeo/api29.php?jtitle=" + cleanquery + "&qtype=" + query_type
self.parser.parse_url(url)
self.error = self.parser.error
self.error_message = self.parser.error_message
if not self.error:
return self.parser.get_journals(attribute='jtitle')
def _precache(self, info, force=False):
"""
Calculate prermitions for user actions.
FIXME: compatibility layer only !!!
"""
# get autorization key
acc_key = self.get_acc_key()
acc = cache.get(acc_key)
if not force and acc_key is not None and acc is not None:
return acc
#FIXME: acc_authorize_action should use flask request directly
user_info = info
user_info.update(self.req)
from invenio.webuser import isUserSubmitter, isUserReferee, \
isUserAdmin, isUserSuperAdmin
from invenio.access_control_engine import acc_authorize_action
from invenio.access_control_admin import acc_get_role_id, \
acc_is_user_in_role
from invenio.search_engine import get_permitted_restricted_collections
data = {}
data['precached_permitted_restricted_collections'] = \
get_permitted_restricted_collections(user_info)
data['precached_usebaskets'] = acc_authorize_action(
user_info, 'usebaskets')[0] == 0
data['precached_useloans'] = acc_authorize_action(
user_info, 'useloans')[0] == 0
data['precached_usegroups'] = acc_authorize_action(
user_info, 'usegroups')[0] == 0
data['precached_usealerts'] = acc_authorize_action(
user_info, 'usealerts')[0] == 0
data['precached_usemessages'] = acc_authorize_action(
user_info, 'usemessages')[0] == 0
data['precached_usestats'] = acc_authorize_action(
user_info, 'runwebstatadmin')[0] == 0
data['precached_viewsubmissions'] = isUserSubmitter(user_info)
data['precached_useapprove'] = isUserReferee(user_info)
data['precached_useadmin'] = isUserAdmin(user_info)
data['precached_usesuperadmin'] = isUserSuperAdmin(user_info)
data['precached_canseehiddenmarctags'] = acc_authorize_action(
user_info, 'runbibedit')[0] == 0
usepaperclaim = False
usepaperattribution = False
viewclaimlink = False
if (CFG_BIBAUTHORID_ENABLED and acc_is_user_in_role(
user_info, acc_get_role_id("paperclaimviewers"))):
usepaperclaim = True
if (CFG_BIBAUTHORID_ENABLED and acc_is_user_in_role(
user_info, acc_get_role_id("paperattributionviewers"))):
usepaperattribution = True
viewlink = False
try:
viewlink = session['personinfo']['claim_in_process']
except (KeyError, TypeError):
pass
if (CFG_BIBAUTHORID_ENABLED and usepaperattribution and viewlink):
viewclaimlink = True
# if (CFG_BIBAUTHORID_ENABLED
# and ((usepaperclaim or usepaperattribution)
# and acc_is_user_in_role(data, acc_get_role_id("paperattributionlinkviewers")))):
# viewclaimlink = True
data['precached_viewclaimlink'] = viewclaimlink
data['precached_usepaperclaim'] = usepaperclaim
data['precached_usepaperattribution'] = usepaperattribution
cache.set(acc_key,
data,
timeout=CFG_WEBSESSION_EXPIRY_LIMIT_DEFAULT * 3600)
return data
def curate():
"""
Index page with uploader and list of existing depositions
"""
action = request.values.get('action')
usercollection_id = request.values.get('collection')
recid = request.values.get('recid', 0, type=int)
# Allowed actions
if action not in ['accept', 'reject', 'remove']:
abort(400)
# Check recid
if not recid:
abort(400)
recid = int(recid)
# Does collection exists
u = UserCollection.query.filter_by(id=usercollection_id).first()
if not u:
abort(400)
# Check permission to perform action on this record
# - Accept and reject is done by community owner
# - Remove is done by record owner
if action in [
'accept',
'reject',
]:
if u.id_user != current_user.get_id():
abort(403)
elif action == 'remove':
try:
email = get_fieldvalues(recid, '8560_f')[0]
if email != current_user['email']:
abort(403)
# User not allowed to remove from the zenodo user collection
if u.id == 'zenodo':
abort(403)
except (IndexError, KeyError):
abort(403)
# Prevent double requests (i.e. give bibupload a chance to make the change)
key = "usercoll_curate:%s_%s" % (usercollection_id, recid)
cache_action = cache.get(key)
if cache_action == action or cache_action in ['reject', 'remove']:
return jsonify({'status': 'success', 'cache': 1})
elif cache_action:
# Operation under way, but the same action
return jsonify({'status': 'failure', 'cache': 1})
if action == "accept":
res = u.accept_record(recid)
elif action == "reject" or action == "remove":
res = u.reject_record(recid)
if res:
# Set 5 min cache to allow bibupload/webcoll to finish
cache.set(key, action, timeout=5 * 60)
return jsonify({'status': 'success', 'cache': 0})
else:
return jsonify({'status': 'failure', 'cache': 0})
def get(self, name):
return cache.get(CFG_CACHE_KEY_PREFIX_SESSION + name)
def curation_action(recid, ucoll_id=None):
"""
Determine if curation action is underway
"""
return cache.get("usercoll_curate:%s_%s" % (ucoll_id, recid))