def get_references(self, xml):
references = []
for reference in xml.getElementsByTagName("ref"):
plain_text = None
ref_type = reference.getElementsByTagName('citation')[0].getAttribute('publication-type').encode('utf-8')
label = get_value_in_tag(reference, "label").strip('.')
authors = []
for author in reference.getElementsByTagName("name"):
given_name = get_value_in_tag(author, "given-names")
surname = get_value_in_tag(author, "surname")
if given_name:
name = "%s, %s" % (surname, given_name)
else:
name = surname
if name.strip().split() == []:
name = get_value_in_tag(author, "string-name")
authors.append(name)
doi_tag = reference.getElementsByTagName("pub-id")
doi = ""
for tag in doi_tag:
if tag.getAttribute("pub-id-type") == "doi":
doi = xml_to_text(tag)
issue = get_value_in_tag(reference, "issue")
page = get_value_in_tag(reference, "fpage")
page_last = get_value_in_tag(reference, "lpage")
title = get_value_in_tag(reference, "source")
volume = get_value_in_tag(reference, "volume")
year = get_value_in_tag(reference, "year")
ext_link = format_arxiv_id(super(NLMParser, self).get_ref_link(reference, "arxiv"))
if ref_type != 'journal':
plain_text = get_value_in_tag(reference, "mixed-citation")
references.append((label, authors, doi, issue, page, page_last, title, volume, year, ext_link, plain_text))
self.references = references
def get_references(self, xml):
references = []
for reference in xml.getElementsByTagName("ce:bib-reference"):
label = get_value_in_tag(reference, "ce:label")
authors = []
for author in reference.getElementsByTagName("sb:author"):
given_name = get_value_in_tag(author, "ce:given-name")
surname = get_value_in_tag(author, "ce:surname")
if given_name:
name = "%s, %s" % (surname, given_name)
else:
name = surname
authors.append(name)
doi = get_value_in_tag(reference, "ce:doi")
issue = get_value_in_tag(reference, "sb:issue")
page = get_value_in_tag(reference, "sb:first-page")
title = get_value_in_tag(reference, "sb:maintitle")
volume = get_value_in_tag(reference, "sb:volume-nr")
tmp_issues = reference.getElementsByTagName('sb:issue')
if tmp_issues:
year = get_value_in_tag(tmp_issues[0], "sb:date")[:4]
else:
year = None
textref = get_value_in_tag(reference, "ce:textref")
ext_link = format_arxiv_id(self.get_ref_link(reference, 'arxiv'))
references.append((label, authors, doi, issue, page, title, volume, year, textref, ext_link))
return references
