def setUp(self):
# This test does not start a container so we have to hack creating a FileSystem singleton instance
# FileSystem(DotDict())
self.tx_L0 = ctd_L0_all()
self.tx_L0.streams = defaultdict(Mock)
self.tx_L0.cond_publisher = Mock()
self.tx_L0.temp_publisher = Mock()
self.tx_L0.pres_publisher = Mock()
self.i = 0
self.tx_L1_C = CTDL1ConductivityTransform()
self.tx_L1_C.streams = defaultdict(Mock)
self.tx_L1_T = CTDL1TemperatureTransform()
self.tx_L1_T.streams = defaultdict(Mock)
self.tx_L1_P = CTDL1PressureTransform()
self.tx_L1_P.streams = defaultdict(Mock)
self.tx_L2_S = SalinityTransform()
self.tx_L2_S.streams = defaultdict(Mock)
self.tx_L2_D = DensityTransform()
self.tx_L2_D.streams = defaultdict(Mock)
def setUp(self):
# This test does not start a container so we have to hack creating a FileSystem singleton instance
# FileSystem(DotDict())
self.px_ctd = SimpleCtdPublisher()
self.px_ctd.last_time = 0
self.tx_L0 = ctd_L0_all()
self.tx_L0.streams = defaultdict(Mock)
self.tx_L0.cond_publisher = Mock()
self.tx_L0.temp_publisher = Mock()
self.tx_L0.pres_publisher = Mock()
self.i = 0
self.tx_L1_C = CTDL1ConductivityTransform()
self.tx_L1_C.streams = defaultdict(Mock)
self.tx_L1_T = CTDL1TemperatureTransform()
self.tx_L1_T.streams = defaultdict(Mock)
self.tx_L1_P = CTDL1PressureTransform()
self.tx_L1_P.streams = defaultdict(Mock)
self.tx_L2_S = SalinityTransform()
self.tx_L2_S.streams = defaultdict(Mock)
self.tx_L2_D = DensityTransform()
self.tx_L2_D.streams = defaultdict(Mock)
class TestCtdTransforms(IonUnitTestCase):
def setUp(self):
# This test does not start a container so we have to hack creating a FileSystem singleton instance
# FileSystem(DotDict())
self.px_ctd = SimpleCtdPublisher()
self.px_ctd.last_time = 0
self.tx_L0 = ctd_L0_all()
self.tx_L0.streams = defaultdict(Mock)
self.tx_L0.cond_publisher = Mock()
self.tx_L0.temp_publisher = Mock()
self.tx_L0.pres_publisher = Mock()
self.i = 0
self.tx_L1_C = CTDL1ConductivityTransform()
self.tx_L1_C.streams = defaultdict(Mock)
self.tx_L1_T = CTDL1TemperatureTransform()
self.tx_L1_T.streams = defaultdict(Mock)
self.tx_L1_P = CTDL1PressureTransform()
self.tx_L1_P.streams = defaultdict(Mock)
self.tx_L2_S = SalinityTransform()
self.tx_L2_S.streams = defaultdict(Mock)
self.tx_L2_D = DensityTransform()
self.tx_L2_D.streams = defaultdict(Mock)
def test_transforms(self):
length = 1
packet = self._get_new_ctd_packet("STR_ID", length)
self.tx_L0.process(packet)
self.tx_L0.cond_publisher.publish = mocksignature(self.tx_L0.cond_publisher.publish)
self.tx_L0.cond_publisher.publish.return_value = ''
self.tx_L0.temp_publisher.publish = mocksignature(self.tx_L0.cond_publisher.publish)
self.tx_L0.temp_publisher.publish.return_value = ''
self.tx_L0.pres_publisher.publish = mocksignature(self.tx_L0.cond_publisher.publish)
self.tx_L0.pres_publisher.publish.return_value = ''
L0_cond = self.tx_L0.cond_publisher.publish.call_args[0][0]
L0_temp = self.tx_L0.temp_publisher.publish.call_args[0][0]
L0_pres = self.tx_L0.pres_publisher.publish.call_args[0][0]
log.debug("L0 cond: %s" % L0_cond)
log.debug("L0 temp: %s" % L0_temp)
log.debug("L0 pres: %s" % L0_pres)
L1_cond = self.tx_L1_C.execute(L0_cond)
log.debug("L1 cond: %s" % L1_cond)
L1_temp = self.tx_L1_T.execute(L0_temp)
log.debug("L1 temp: %s" % L1_temp)
L1_pres = self.tx_L1_P.execute(L0_pres)
log.debug("L1 pres: %s" % L1_pres)
L2_sal = self.tx_L2_S.execute(packet)
log.debug("L2 sal: %s" % L2_sal)
L2_dens = self.tx_L2_D.execute(packet)
log.debug("L2 dens: %s" % L2_dens)
class TestCtdTransforms(IonUnitTestCase):
def setUp(self):
# This test does not start a container so we have to hack creating a FileSystem singleton instance
# FileSystem(DotDict())
self.px_ctd = SimpleCtdPublisher()
self.px_ctd.last_time = 0
self.tx_L0 = ctd_L0_all()
self.tx_L0.streams = defaultdict(Mock)
self.tx_L0.cond_publisher = Mock()
self.tx_L0.temp_publisher = Mock()
self.tx_L0.pres_publisher = Mock()
self.i = 0
self.tx_L1_C = CTDL1ConductivityTransform()
self.tx_L1_C.streams = defaultdict(Mock)
self.tx_L1_T = CTDL1TemperatureTransform()
self.tx_L1_T.streams = defaultdict(Mock)
self.tx_L1_P = CTDL1PressureTransform()
self.tx_L1_P.streams = defaultdict(Mock)
self.tx_L2_S = SalinityTransform()
self.tx_L2_S.streams = defaultdict(Mock)
self.tx_L2_D = DensityTransform()
self.tx_L2_D.streams = defaultdict(Mock)
@unittest.skip('The UNIT tests have to be completely redone')
def test_transforms(self):
length = 1
packet = self._get_new_ctd_packet("STR_ID", length)
self.tx_L0.process(packet)
self.tx_L0.cond_publisher.publish = mocksignature(self.tx_L0.cond_publisher.publish)
self.tx_L0.cond_publisher.publish.return_value = ''
self.tx_L0.temp_publisher.publish = mocksignature(self.tx_L0.cond_publisher.publish)
self.tx_L0.temp_publisher.publish.return_value = ''
self.tx_L0.pres_publisher.publish = mocksignature(self.tx_L0.cond_publisher.publish)
self.tx_L0.pres_publisher.publish.return_value = ''
L0_cond = self.tx_L0.cond_publisher.publish.call_args[0][0]
L0_temp = self.tx_L0.temp_publisher.publish.call_args[0][0]
L0_pres = self.tx_L0.pres_publisher.publish.call_args[0][0]
log.debug("L0 cond: %s" % L0_cond)
log.debug("L0 temp: %s" % L0_temp)
log.debug("L0 pres: %s" % L0_pres)
L1_cond = self.tx_L1_C.execute(L0_cond)
log.debug("L1 cond: %s" % L1_cond)
L1_temp = self.tx_L1_T.execute(L0_temp)
log.debug("L1 temp: %s" % L1_temp)
L1_pres = self.tx_L1_P.execute(L0_pres)
log.debug("L1 pres: %s" % L1_pres)
L2_sal = self.tx_L2_S.execute(packet)
log.debug("L2 sal: %s" % L2_sal)
L2_dens = self.tx_L2_D.execute(packet)
log.debug("L2 dens: %s" % L2_dens)
def test_pressure_algorithm(self):
"""
Inputs Output
p_psia p_dbar
230.6859 159.0523
233.8845 161.2577
300.9482 207.4965
400.2314 275.9498
500.3320 344.9668
600.3444 413.9229
1234.5678 851.2045
"""
def algorithm(input_pres):
output_pres = input_pres * 0.689475728
return output_pres
correct_output = numpy.array([159.0523,161.2577,207.4965,275.9498,344.9668,413.9229,851.2045])
input = numpy.array([230.6859, 233.8845, 300.9482,400.2314,500.3320, 600.3444, 1234.5678])
output = algorithm(input)
numpy.testing.assert_almost_equal(output, correct_output, decimal=4)
class TestCtdTransforms(IonUnitTestCase):
def setUp(self):
# This test does not start a container so we have to hack creating a FileSystem singleton instance
# FileSystem(DotDict())
self.tx_L0 = ctd_L0_all()
self.tx_L0.streams = defaultdict(Mock)
self.tx_L0.cond_publisher = Mock()
self.tx_L0.temp_publisher = Mock()
self.tx_L0.pres_publisher = Mock()
self.i = 0
self.tx_L1_C = CTDL1ConductivityTransform()
self.tx_L1_C.streams = defaultdict(Mock)
self.tx_L1_T = CTDL1TemperatureTransform()
self.tx_L1_T.streams = defaultdict(Mock)
self.tx_L1_P = CTDL1PressureTransform()
self.tx_L1_P.streams = defaultdict(Mock)
self.tx_L2_S = SalinityTransform()
self.tx_L2_S.streams = defaultdict(Mock)
self.tx_L2_D = DensityTransform()
self.tx_L2_D.streams = defaultdict(Mock)
@unittest.skip('The UNIT tests have to be completely redone')
def test_transforms(self):
length = 1
packet = self._get_new_ctd_packet("STR_ID", length)
self.tx_L0.process(packet)
self.tx_L0.cond_publisher.publish = mocksignature(
self.tx_L0.cond_publisher.publish)
self.tx_L0.cond_publisher.publish.return_value = ''
self.tx_L0.temp_publisher.publish = mocksignature(
self.tx_L0.cond_publisher.publish)
self.tx_L0.temp_publisher.publish.return_value = ''
self.tx_L0.pres_publisher.publish = mocksignature(
self.tx_L0.cond_publisher.publish)
self.tx_L0.pres_publisher.publish.return_value = ''
L0_cond = self.tx_L0.cond_publisher.publish.call_args[0][0]
L0_temp = self.tx_L0.temp_publisher.publish.call_args[0][0]
L0_pres = self.tx_L0.pres_publisher.publish.call_args[0][0]
log.debug("L0 cond: %s" % L0_cond)
log.debug("L0 temp: %s" % L0_temp)
log.debug("L0 pres: %s" % L0_pres)
L1_cond = self.tx_L1_C.execute(L0_cond)
log.debug("L1 cond: %s" % L1_cond)
L1_temp = self.tx_L1_T.execute(L0_temp)
log.debug("L1 temp: %s" % L1_temp)
L1_pres = self.tx_L1_P.execute(L0_pres)
log.debug("L1 pres: %s" % L1_pres)
L2_sal = self.tx_L2_S.execute(packet)
log.debug("L2 sal: %s" % L2_sal)
L2_dens = self.tx_L2_D.execute(packet)
log.debug("L2 dens: %s" % L2_dens)
def test_pressure_algorithm(self):
"""
Inputs Output
p_psia p_dbar
230.6859 159.0523
233.8845 161.2577
300.9482 207.4965
400.2314 275.9498
500.3320 344.9668
600.3444 413.9229
1234.5678 851.2045
"""
def algorithm(input_pres):
output_pres = input_pres * 0.689475728
return output_pres
correct_output = numpy.array([
159.0523, 161.2577, 207.4965, 275.9498, 344.9668, 413.9229,
851.2045
])
input = numpy.array([
230.6859, 233.8845, 300.9482, 400.2314, 500.3320, 600.3444,
1234.5678
])
output = algorithm(input)
numpy.testing.assert_almost_equal(output, correct_output, decimal=4)
class TestScienceObjectCodec(IonUnitTestCase):
pass
def setUp(self):
# This test does not start a container so we have to hack creating a FileSystem singleton instance
FileSystem(DotDict())
self.px_ctd = SimpleCtdPublisher()
self.px_ctd.last_time = 0
self.tx_L0 = ctd_L0_all()
self.tx_L0.streams = defaultdict(Mock)
self.tx_L0.conductivity = Mock()
self.tx_L0.temperature = Mock()
self.tx_L0.pressure = Mock()
self.tx_L1_C = CTDL1ConductivityTransform()
self.tx_L1_C.streams = defaultdict(Mock)
self.tx_L1_T = CTDL1TemperatureTransform()
self.tx_L1_T.streams = defaultdict(Mock)
self.tx_L1_P = CTDL1PressureTransform()
self.tx_L1_P.streams = defaultdict(Mock)
self.tx_L2_S = SalinityTransform()
self.tx_L2_S.streams = defaultdict(Mock)
self.tx_L2_D = DensityTransform()
self.tx_L2_D.streams = defaultdict(Mock)
def test_transforms(self):
length = 1
packet = self.px_ctd._get_ctd_packet("STR_ID", length)
log.info("Packet: %s" % packet)
self.tx_L0.process(packet)
L0_cond = self.tx_L0.conductivity.publish.call_args[0][0]
L0_temp = self.tx_L0.temperature.publish.call_args[0][0]
L0_pres = self.tx_L0.pressure.publish.call_args[0][0]
log.info("L0 cond: %s" % L0_cond)
log.info("L0 temp: %s" % L0_temp)
log.info("L0 pres: %s" % L0_pres)
L1_cond = self.tx_L1_C.execute(L0_cond)
log.info("L1 cond: %s" % L1_cond)
L1_temp = self.tx_L1_T.execute(L0_temp)
log.info("L1 temp: %s" % L1_temp)
L1_pres = self.tx_L1_P.execute(L0_pres)
log.info("L1 pres: %s" % L1_pres)
L2_sal = self.tx_L2_S.execute(packet)
log.info("L2 sal: %s" % L2_sal)
L2_dens = self.tx_L2_D.execute(packet)
log.info("L2 dens: %s" % L2_dens)
class TestScienceObjectCodec(IonUnitTestCase):
pass
def setUp(self):
# This test does not start a container so we have to hack creating a FileSystem singleton instance
FileSystem(DotDict())
self.px_ctd = SimpleCtdPublisher()
self.px_ctd.last_time = 0
self.tx_L0 = ctd_L0_all()
self.tx_L0.streams = defaultdict(Mock)
self.tx_L0.conductivity = Mock()
self.tx_L0.temperature = Mock()
self.tx_L0.pressure = Mock()
self.tx_L1_C = CTDL1ConductivityTransform()
self.tx_L1_C.streams = defaultdict(Mock)
self.tx_L1_T = CTDL1TemperatureTransform()
self.tx_L1_T.streams = defaultdict(Mock)
self.tx_L1_P = CTDL1PressureTransform()
self.tx_L1_P.streams = defaultdict(Mock)
self.tx_L2_S = SalinityTransform()
self.tx_L2_S.streams = defaultdict(Mock)
self.tx_L2_D = DensityTransform()
self.tx_L2_D.streams = defaultdict(Mock)
def test_transforms(self):
length = 1
packet = self.px_ctd._get_ctd_packet("STR_ID", length)
log.info("Packet: %s" % packet)
self.tx_L0.process(packet)
L0_cond = self.tx_L0.conductivity.publish.call_args[0][0]
L0_temp = self.tx_L0.temperature.publish.call_args[0][0]
L0_pres = self.tx_L0.pressure.publish.call_args[0][0]
log.info("L0 cond: %s" % L0_cond)
log.info("L0 temp: %s" % L0_temp)
log.info("L0 pres: %s" % L0_pres)
L1_cond = self.tx_L1_C.execute(L0_cond)
log.info("L1 cond: %s" % L1_cond)
L1_temp = self.tx_L1_T.execute(L0_temp)
log.info("L1 temp: %s" % L1_temp)
L1_pres = self.tx_L1_P.execute(L0_pres)
log.info("L1 pres: %s" % L1_pres)
L2_sal = self.tx_L2_S.execute(packet)
log.info("L2 sal: %s" % L2_sal)
L2_dens = self.tx_L2_D.execute(packet)
log.info("L2 dens: %s" % L2_dens)