def test_time_as_number(self):
# Make sure Coord.cell() normally returns the values straight
# out of the Coord's points/bounds arrays.
coord = self._mock_coord()
cell = Coord.cell(coord, 0)
self.assertIs(cell.point, mock.sentinel.time)
self.assertEqual(cell.bound,
(mock.sentinel.lower, mock.sentinel.upper))
def test_time_as_number(self):
# Make sure Coord.cell() normally returns the values straight
# out of the Coord's points/bounds arrays.
coord = self._mock_coord()
cell = Coord.cell(coord, 0)
self.assertIs(cell.point, mock.sentinel.time)
self.assertEquals(cell.bound,
(mock.sentinel.lower, mock.sentinel.upper))
def _add_forecast_reference_time(input_time: Coord, advected_cube: Cube) -> None:
"""Add or replace a forecast reference time on the advected cube"""
try:
advected_cube.remove_coord("forecast_reference_time")
except CoordinateNotFoundError:
pass
frt_coord_name = "forecast_reference_time"
frt_coord_spec = TIME_COORDS[frt_coord_name]
frt_coord = input_time.copy()
frt_coord.rename(frt_coord_name)
frt_coord.convert_units(frt_coord_spec.units)
frt_coord.points = round_close(frt_coord.points, dtype=frt_coord_spec.dtype)
advected_cube.add_aux_coord(frt_coord)
def pad_coord(coord: Coord, width: int, method: str) -> Coord:
"""
Construct a new coordinate by extending the current coordinate by the
padding width.
Args:
coord:
Original coordinate which will be used as the basis of the
new extended coordinate.
width:
The width of padding in grid cells (the extent of the
neighbourhood radius in grid cells in a given direction).
method:
A string determining whether the coordinate is being expanded
or contracted. Options: 'remove' to remove points from coord;
'add' to add points to coord.
Returns:
Coordinate with expanded or contracted length, to be added to
the padded or unpadded iris cube.
Raises:
ValueError: Raise an error if non-uniform increments exist between
grid points.
"""
orig_points = coord.points
increment = orig_points[1:] - orig_points[:-1]
if np.isclose(np.sum(np.diff(increment)), 0):
increment = increment[0]
else:
msg = "Non-uniform increments between grid points: " "{}.".format(
increment)
raise ValueError(msg)
if method == "add":
num_of_new_points = len(orig_points) + width + width
new_points = np.linspace(
orig_points[0] - width * increment,
orig_points[-1] + width * increment,
num_of_new_points,
dtype=np.float32,
)
elif method == "remove":
end_width = -width if width != 0 else None
new_points = np.float32(orig_points[width:end_width])
new_points = new_points.astype(orig_points.dtype)
new_points_bounds = np.array(
[new_points - 0.5 * increment, new_points + 0.5 * increment],
dtype=np.float32).T
return coord.copy(points=new_points, bounds=new_points_bounds)
def test_time_as_object(self):
# Ensure Coord.cell() converts the point/bound values to
# "datetime" objects.
coord = self._mock_coord()
coord.units.num2date = mock.Mock(
side_effect=[mock.sentinel.datetime,
(mock.sentinel.datetime_lower,
mock.sentinel.datetime_upper)])
cell = Coord.cell(coord, 0)
self.assertIs(cell.point, mock.sentinel.datetime)
self.assertEqual(cell.bound,
(mock.sentinel.datetime_lower,
mock.sentinel.datetime_upper))
self.assertEqual(coord.units.num2date.call_args_list,
[mock.call((mock.sentinel.time,)),
mock.call((mock.sentinel.lower,
mock.sentinel.upper))])
def test_time_as_object(self):
# Ensure Coord.cell() converts the point/bound values to
# "datetime" objects.
coord = self._mock_coord()
coord.units.num2date = mock.Mock(side_effect=[
mock.sentinel.datetime,
(mock.sentinel.datetime_lower, mock.sentinel.datetime_upper)
])
cell = Coord.cell(coord, 0)
self.assertIs(cell.point, mock.sentinel.datetime)
self.assertEqual(
cell.bound,
(mock.sentinel.datetime_lower, mock.sentinel.datetime_upper))
self.assertEqual(coord.units.num2date.call_args_list, [
mock.call((mock.sentinel.time, )),
mock.call((mock.sentinel.lower, mock.sentinel.upper))
])
def test_time_as_object(self):
# When iris.FUTURE.cell_datetime_objects is True, ensure
# Coord.cell() converts the point/bound values to "datetime"
# objects.
coord = self._mock_coord()
coord.units.num2date = mock.Mock(
side_effect=[mock.sentinel.datetime,
(mock.sentinel.datetime_lower,
mock.sentinel.datetime_upper)])
with mock.patch('iris.FUTURE', cell_datetime_objects=True):
cell = Coord.cell(coord, 0)
self.assertIs(cell.point, mock.sentinel.datetime)
self.assertEqual(cell.bound,
(mock.sentinel.datetime_lower,
mock.sentinel.datetime_upper))
self.assertEqual(coord.units.num2date.call_args_list,
[mock.call((mock.sentinel.time,)),
mock.call((mock.sentinel.lower,
mock.sentinel.upper))])
def iris_time_to_datetime(time_coord: Coord,
point_or_bound: str = "point") -> List[datetime]:
"""
Convert iris time to python datetime object. Working in UTC.
Args:
time_coord:
Iris time coordinate element(s).
Returns:
The time element(s) recast as a python datetime object.
"""
coord = time_coord.copy()
coord.convert_units("seconds since 1970-01-01 00:00:00")
if point_or_bound == "point":
datetime_list = [value.point for value in coord.cells()]
elif point_or_bound == "bound":
datetime_list = [value.bound for value in coord.cells()]
return datetime_list
def test_time_as_object(self):
# When iris.FUTURE.cell_datetime_objects is True, ensure
# Coord.cell() converts the point/bound values to "datetime"
# objects.
coord = self._mock_coord()
coord.units.num2date = mock.Mock(side_effect=[
mock.sentinel.datetime,
(mock.sentinel.datetime_lower, mock.sentinel.datetime_upper)
])
with mock.patch('iris.FUTURE', cell_datetime_objects=True):
cell = Coord.cell(coord, 0)
self.assertIs(cell.point, mock.sentinel.datetime)
self.assertEquals(
cell.bound,
(mock.sentinel.datetime_lower, mock.sentinel.datetime_upper))
self.assertEqual(coord.units.num2date.call_args_list, [
mock.call((mock.sentinel.time, )),
mock.call((mock.sentinel.lower, mock.sentinel.upper))
])
def _update_time(input_time: Coord, advected_cube: Cube,
timestep: timedelta) -> None:
"""Increment validity time on the advected cube
Args:
input_time:
Time coordinate from source cube
advected_cube:
Cube containing advected data (modified in place)
timestep:
Time difference between the advected output and the source
"""
original_datetime = next(input_time.cells())[0]
new_datetime = original_datetime + timestep
new_time = input_time.units.date2num(new_datetime)
time_coord_name = "time"
time_coord_spec = TIME_COORDS[time_coord_name]
time_coord = advected_cube.coord(time_coord_name)
time_coord.points = new_time
time_coord.convert_units(time_coord_spec.units)
time_coord.points = round_close(time_coord.points,
dtype=time_coord_spec.dtype)
def test_coord_stash(self):
token = 'stash'
coord = Coord(1, attributes=dict(STASH=token))
self._check(token, coord)
def grid_spacing(coord: Coord) -> float:
"""Calculate grid spacing along a given spatial axis"""
new_coord = coord.copy()
new_coord.convert_units("m")
return np.float32(np.diff((new_coord).points)[0])
def test(self):
emsg = ("Can't instantiate abstract class Coord with abstract"
" methods __init__")
with self.assertRaisesRegex(TypeError, emsg):
_ = Coord(points=[0, 1])
def _calculate_forecast_period(
time_coord: Coord,
frt_coord: Coord,
dim_coord: bool = False,
coord_spec: TimeSpec = TIME_COORDS["forecast_period"],
) -> Coord:
"""
Calculate a forecast period from existing time and forecast reference
time coordinates.
Args:
time_coord:
Time coordinate
frt_coord:
Forecast reference coordinate
dim_coord:
If true, create an iris.coords.DimCoord instance. Default is to
create an iris.coords.AuxCoord.
coord_spec:
Specification of units and dtype for the forecast_period
coordinate.
Returns:
Forecast period coordinate corresponding to the input times and
forecast reference times specified
Warns:
UserWarning: If any calculated forecast periods are negative
"""
# use cell() access method to get datetime.datetime instances
time_points = np.array([c.point for c in time_coord.cells()])
forecast_reference_time_points = np.array([c.point for c in frt_coord.cells()])
required_lead_times = time_points - forecast_reference_time_points
required_lead_times = np.array([x.total_seconds() for x in required_lead_times])
if time_coord.bounds is not None:
time_bounds = np.array([c.bound for c in time_coord.cells()])
required_lead_time_bounds = time_bounds - forecast_reference_time_points
required_lead_time_bounds = np.array(
[[b.total_seconds() for b in x] for x in required_lead_time_bounds]
)
else:
required_lead_time_bounds = None
coord_type = DimCoord if dim_coord else AuxCoord
result_coord = coord_type(
required_lead_times,
standard_name="forecast_period",
bounds=required_lead_time_bounds,
units="seconds",
)
result_coord.convert_units(coord_spec.units)
if coord_spec.dtype not in FLOAT_TYPES:
result_coord.points = round_close(result_coord.points)
if result_coord.bounds is not None:
result_coord.bounds = round_close(result_coord.bounds)
result_coord.points = result_coord.points.astype(coord_spec.dtype)
if result_coord.bounds is not None:
result_coord.bounds = result_coord.bounds.astype(coord_spec.dtype)
if np.any(result_coord.points < 0):
msg = (
"The values for the time {} and "
"forecast_reference_time {} coordinates from the "
"input cube have produced negative values for the "
"forecast_period. A forecast does not generate "
"values in the past."
).format(time_coord.points, frt_coord.points)
warnings.warn(msg)
return result_coord
def test_coord_standard_name(self):
token = 'air_temperature'
coord = Coord(1, standard_name=token)
self._check(token, coord)
def test_mixture_default(self):
token = 'air temperature' # includes space
coord = Coord(1, long_name=token)
result = CellMethod(self.method, coords=[coord, token])
expected = '{}: unknown, unknown'.format(self.method, token, token)
self.assertEqual(str(result), expected)
def test_mixture(self):
token = 'air_temperature'
coord = Coord(1, standard_name=token)
result = CellMethod(self.method, coords=[coord, token])
expected = '{}: {}, {}'.format(self.method, token, token)
self.assertEqual(str(result), expected)
def test_coord_stash_default(self):
token = '_stash' # includes leading underscore
coord = Coord(1, attributes=dict(STASH=token))
self._check(token, coord, default=True)
def test_coord_var_name_fail(self):
token = 'var name' # includes space
emsg = 'is not a valid NetCDF variable name'
with self.assertRaisesRegexp(ValueError, emsg):
Coord(1, var_name=token)
def test_coord_var_name(self):
token = 'var_name'
coord = Coord(1, var_name=token)
self._check(token, coord)
def test_coord_long_name_default(self):
token = 'long name' # includes space
coord = Coord(1, long_name=token)
self._check(token, coord, default=True)
def test_coord_long_name(self):
token = 'long_name'
coord = Coord(1, long_name=token)
self._check(token, coord)