def test_validate_ISAjson_example_skip_file(self):
from isatools.examples import validateISAjson
old_stdout = sys.stdout
sys.stdout = mystdout = StringIO()
args = ['validateISAjson.py', os.path.join(utils.JSON_DATA_DIR, 'BII-I-1', 'BII-I-1.jso')]
validateISAjson.main(args)
sys.stdout = old_stdout
self.assertIn("Validated 0 ISA-JSONs, 0 valid ISA-JSONs, 0 invalid ISA-JSONs", mystdout.getvalue())
def test_validate_ISAjson_example(self):
from isatools.examples import validateISAjson
old_stdout = sys.stdout
sys.stdout = mystdout = StringIO()
args = ['validateISAjson.py', os.path.join(utils.JSON_DATA_DIR, 'BII-I-1', 'BII-I-1.json')]
validateISAjson.main(args)
sys.stdout = old_stdout
self.assertIn("Validated 1 ISA-JSONs, 1 valid ISA-JSONs, 0 invalid ISA-JSONs", mystdout.getvalue())
self.assertIn("Found 0 errors and 136 warnings in across all ISA-JSONs", mystdout.getvalue()) # TODO: Double check why the warnings occur
def test_validate_ISAjson_example_invalid(self):
from isatools.examples import validateISAjson
with self.assertRaises(SystemExit):
old_stdout = sys.stdout
sys.stdout = mystdout = StringIO()
args = ['validateISAjson.py', os.path.join(utils.JSON_DATA_DIR, 'unit', 'invalid_isajson.json')]
validateISAjson.main(args)
sys.stdout = old_stdout
self.assertIn("Validated 1 ISA-JSONs, 0 valid ISA-JSONs, 1 invalid ISA-JSONs", mystdout.getvalue())
def test_validate_ISAjson_example_wrong_args(self):
from isatools.examples import validateISAjson
with self.assertRaises(SystemExit) as cm:
validateISAjson.main([])
self.assertEqual(cm.exception.code, 1)