def main(input_file, output_dir):
validate(input_file, output_dir)
params = web_var.standard_vars
mapping_file = r"/archive/NDXGEM/user/scripts/autoreduction/gem_cycle_mapping.yaml"
calib_dir = r"/archive/NDXGEM/user/scripts/autoreduction/Calibration"
user = "******"
if params['mode'] == '' or params['mode'] == None:
ws = Load(input_file)
mode = determine_mode(ws)
if mode:
print("Using {} mode for reduction.".format(mode))
params['mode'] = mode
else:
raise ValueError(
"No mode supplied and unable to determine from logs please ensure "
"Phase T0, 6m and 9m are expected. "
"Re-run and manually supply mode in the parameters.")
cropping_values = [
(550, 19900), # Bank 1
(550, 19900), # Bank 2
(550, 19900), # Bank 3
(550, 19900), # Bank 4
(550, 18500), # Bank 5
(550, 16750) # Bank 6
]
if params['mode'] == 'Rietveld':
cropping_values = [
(700, 19500), # Bank 1
(1000, 19500), # Bank 2
(1000, 19500), # Bank 3
(1000, 19500), # Bank 4
(1000, 18500), # Bank 5
(1000, 18000) # Bank 6
]
gem = Gem(
user_name=user,
calibration_directory=calib_dir,
output_directory=output_dir,
calibration_mapping_file=mapping_file,
do_absorb_corrections=params['do_absorb_corrections'],
vanadium_normalisation=params['vanadium_normalisation'],
input_mode=params['input_mode'],
mode=params['mode'],
multiple_scattering=params['multiple_scattering'],
focused_cropping_values=cropping_values,
)
# Prior to running this script, you need to have created a vanadium for cycle 17_2 like so:
#gem.create_vanadium(do_absorb_corrections=True,
# mode="PDF",
# first_cycle_run_no=87568)
# Focus run
run_num = get_run_number(input_file)
gem.focus(run_number=run_num, do_absorb_corrections=False)
def setup_inst_object(mode):
inst_obj = Gem(user_name=user_name,
calibration_mapping_file=calibration_map_path,
calibration_directory=calibration_dir,
output_directory=output_dir,
mode=mode)
return inst_obj