STRING_PREFILTER if prefilter else "",
STRING_CBRECONSTRUCTION.format(
recoMode=int(recoMode == "FDK"),
fourierFilter=STRING_FOURIERFILTER if recoMode == "FDK" else "",
setSize=numRuns*"20 ",
numRuns=numRuns,
mult=1 if recoMode == "MLEM" else 0,
compute = 3 if prefilter else 2,
tvGrad=tvGrad
),
#STRING_LINEEXTRACTION.format(
#fname=fpath,
#compute = 4 if prefilter else 3),
STRING_POSTFILTER if postfilter else "",
STRING_EXPORTRAW.format(
fname=fpath,
compute = 3 if filMode == "no" else 4
)
])
wsFileString = STRING_IWS_WRAPPING.format(
algorithms=algorithms,
phantomfile=PHANTOM_FILEPATH
)
wsFilePath = "{}.iws".format(fpath)
with open(wsFilePath, 'w') as wsFile:
wsFile.write(wsFileString)
print("Running workspace file, creating {} ...".format(wsFilePath))
call([EXECUTABLE, wsFilePath])
addPoissonNoise=int(noise),
sdd=GEOMETRIES[GEOMETRY].sdd,
spd=GEOMETRIES[GEOMETRY].spd
),
#STRING_PREFILTER if prefilter else "",
STRING_CBRECONSTRUCTION.format(
recoMode=int(recoMode == "FDK"),
fourierFilter=STRING_FOURIERFILTER if recoMode == "FDK" else "",
setSize=numRuns*"20 ",
numRuns=numRuns,
mult=1 if recoMode == "MLEM" else 0,
compute = 3 if prefilter else 2,
tvGrad=tvGrad
),
STRING_EXPORTRAW.format(
fname=tmp_fpath,
compute = 3 if filMode == 0 else 4
)
])
wsFileString = STRING_IWS_WRAPPING.format(
algorithms=algorithms,
phantomfile=PHANTOM_FILEPATH
)
wsFilePath = "{}.iws".format(fpath)
with open(wsFilePath, 'w') as wsFile:
wsFile.write(wsFileString)
print("Running workspace file, creating {} ...".format(wsFilePath))
call([EXECUTABLE, wsFilePath])
STRING_CBRECONSTRUCTION.format(
recoMode=int(recoMode == "FDK"),
fourierFilter=STRING_FOURIERFILTER if recoMode == "FDK" else "",
setSize=numRuns*"20 ",
numRuns=numRuns,
mult=1 if recoMode == "MLEM" else 0,
compute = 3 if prefilter else 2,
tvGrad=tvGrad
),
#STRING_LINEEXTRACTION.format(
#fname=fpath,
#compute = 4 if prefilter else 3),
STRING_POSTFILTER if postfilter else "",
STRING_EXPORTRAW.format(
fname=fpath,
#compute = 5 if prefilter else
# 4 if postfilter else 3
compute = 3 if filMode == "no" else 4
)
])
wsFileString = STRING_IWS_WRAPPING.format(
algorithms=algorithms,
phantomfile=PHANTOM_FILE
)
wsFilePath = "{}.iws".format(fpath)
with open(wsFilePath, 'w') as wsFile:
wsFile.write(wsFileString)
print("Running workspace file, creating {} ...".format(wsFilePath))
