from ij import IJ
from ij.plugin.frame import RoiManager
from ij.gui import PolygonRoi
from ij.gui import Roi
from java.awt import FileDialog
fd = FileDialog(IJ.getInstance(), "Open", FileDialog.LOAD)
fd.show()
file_name = fd.getDirectory() + fd.getFile()
print(file_name)
RM = RoiManager()
rm = RM.getRoiManager()
imp = IJ.getImage()
textfile = open(file_name, 'r')
for line in textfile:
xy = map(int, line.rstrip().split(','))
X = xy[::2]
Y = xy[1::2]
imp.setRoi(PolygonRoi(X, Y, Roi.POLYGON))
#IJ.run(imp, "Convex Hull", "")
roi = imp.getRoi()
print roi
rm.addRoi(roi)
rm.runCommand("Associate", "true")
rm.runCommand("Show All with labels")
homeDir = os.environ.get("HOMEPATH")
except:
pass
if not homeDir: homeDir = "?"
return homeDir
if i_want_popups or fileToImport is None or fileToImport == "":
if Platform.isOSX():
System.setProperty(
"com.apple.macos.use-file-dialog-packages", "true"
) # In theory prevents access to app file structure (but doesnt seem to work)
System.setProperty("apple.awt.fileDialogForDirectories", "false")
fDialog = FileDialog(None, "Select file for import")
fDialog.setMultipleMode(False)
fDialog.setMode(FileDialog.LOAD)
if fileToImport is None:
fDialog.setFile("select_your_file")
fDialog.setDirectory(get_home_dir())
else:
fDialog.setFile(fileToImport)
fDialog.setVisible(True)
if (fDialog.getFile() is None) or fDialog.getFile() == "":
raise Exception(
"User chose to cancel or no file selected >> So no Import will be performed... "
)
fileToImport = os.path.join(fDialog.getDirectory(), fDialog.getFile())
