class BobGui(JFrame): def __init__(self): super(BobGui, self).__init__('BobPy') # IJ.log('okay?') # print('okay??') self.setLayout(BorderLayout()) self.main_panel = JPanel() # self.main_panel.setLayout(MigLayout('insets 1 10 1 1')) self.main_panel.setLayout(MigLayout()) dir_panel = JPanel() dir_panel.setLayout(BoxLayout(dir_panel, BoxLayout.X_AXIS)) dir_label = JLabel('Experiment Folder:') dir_panel.add(dir_label) self.dir_text_field = JTextField(10) self.dir_text_field.addActionListener( ActionListenerFactory(self, self.text_field_al)) dir_panel.add(self.dir_text_field) dir_button = JButton('open') dir_button.addActionListener( ActionListenerFactory(self, self.choose_dir_al)) dir_panel.add(dir_button) self.main_panel.add(dir_panel, 'wrap, growx, spanx, pushx') add_key_args(self.main_panel, 'close_w', ActionListenerFactory(self, self.close_al), KeyEvent.VK_W, Toolkit.getDefaultToolkit().getMenuShortcutKeyMask()) self.add(self.main_panel, BorderLayout.CENTER) self.setPreferredSize(Dimension(650, 600)) self.pack() self.setLocationRelativeTo(None) self.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE) self.setVisible(True) def show_exper_info(self): chf_panel = self.make_chf_panel() hseg_tree_panel = self.make_hseg_tree_panel() self.split_pane = JSplitPane(JSplitPane.HORIZONTAL_SPLIT) self.split_pane.setOneTouchExpandable(True) self.split_pane.setContinuousLayout(True) self.split_pane.setResizeWeight(0.5) self.split_pane.add(chf_panel) self.split_pane.add(hseg_tree_panel) self.main_panel.add(self.split_pane, 'grow, wrap') # self.log_text = JTextArea() self.main_panel.add(self.log_text, 'grow, wrap') self.log_text.setLineWrap(True) self.log_text.setWrapStyleWord(True) self.revalidate() def make_chf_panel(self): """ chf --> common hseg files """ chf_panel = JPanel() chf_panel.setLayout(MigLayout('insets 0')) chf_files_label = JLabel('Hemisegment cells') chf_files_text = JTextArea( BobGui.archetype_to_str( self.exper.hseg_cell_files_cab().archetype)) chf_panel.add(chf_files_label, 'growx, wrap') chf_panel.add(chf_files_text, 'grow, wrap') chf_files_label = JLabel('Hemisegment binary image files') chf_files_text = JTextArea( BobGui.archetype_to_str(self.exper.hseg_bin_files_cab().archetype)) chf_panel.add(chf_files_label, 'growx, wrap') chf_panel.add(chf_files_text, 'grow, wrap') chf_files_label = JLabel('Intensity Image Files') # chf_files_text = JTextArea(BobGui.archetype_to_str(self.exper.hseg_intens_im_files_cab().archetype)) # print(self.exper.hseg_intens_im_files_cab().archetype) # chf_panel.add(chf_files_label, 'growx, wrap') # chf_panel.add(chf_files_text, 'grow, wrap') self.intens_im_boxes = [] intens_im_panel = JPanel() intens_im_panel.setLayout(MigLayout('insets 0')) for poss_im_file in self.exper.hseg_intens_im_files_cab().archetype: self.intens_im_boxes.append(JCheckBox(poss_im_file)) intens_im_panel.add(self.intens_im_boxes[-1], 'wrap') chf_panel.add(chf_files_label, 'growx, wrap') chf_panel.add(intens_im_panel, 'grow, wrap') mdf_create_button = JButton( 'Create meta_data file from default outline') # mdf_create_button = JButton('<html>Create meta_data file<br>from default outline</html>') mdf_create_button.addActionListener( ActionListenerFactory(self, self.mdf_create_al)) mdf_open_button = JButton('Open existing meta_data file') mdf_open_button.addActionListener( ActionListenerFactory(self, self.mdf_open_al)) # meta_data_file_buttton = JButton('Open/Create meta_data file') # meta_data_file_buttton.addActionListener(ActionListenerFactory(self, self.meta_data_al)) # chf_panel.add(meta_data_file_buttton) chf_panel.add(mdf_create_button, 'wrap') chf_panel.add(mdf_open_button, 'wrap') chf_scroll_pane = JScrollPane() chf_scroll_pane.getViewport().setView(chf_panel) return chf_scroll_pane @staticmethod def archetype_to_str(archetype): at_str = '' for val in archetype: at_str += str(val) + '\n' return at_str def make_hseg_tree_panel(self): root = DefaultMutableTreeNode(self.exper.name) for hseg in self.exper.hsegs(): hseg_node = DefaultMutableTreeNode(hseg.name) root.add(hseg_node) hseg_at_deviations = self.exper.hseg_files_cab( ).archetype_deviations if len(hseg_at_deviations[hseg.name]) > 0: for definer, file_names in hseg_at_deviations[ hseg.name].items(): for file_name in file_names: node_str = definer + ': ' + file_name temp = DefaultMutableTreeNode(node_str) hseg_node.add(temp) hseg_tree = JTree(root) hseg_tree.setCellRenderer(BobPyTreeCellRenderer()) hseg_scroll_pane = JScrollPane() hseg_scroll_pane.getViewport().setView((hseg_tree)) hseg_panel = JPanel(MigLayout('insets 0')) hseg_panel.add(hseg_scroll_pane, 'grow, span, push, wrap') run_button = JButton('Run') run_button.addActionListener(ActionListenerFactory(self, self.run_al)) rerun_button = JButton('Rerun') rerun_button.addActionListener( ActionListenerFactory(self, self.rerun_al)) hseg_panel.add(run_button) hseg_panel.add(rerun_button) return hseg_panel def log(self, text): self.log_text.append(str(text) + '\n') def text_field_al(self, e): # self.dir_path = self.got_exper(self.dir_text_field.getText()) def choose_dir_al(self, e): dc = DirectoryChooser('Choose a bob_py experiment folder') # self.dir_path = dc.getDirectory() # self.dir_text_field.setText(self.dir_path) # self.dir_text_field.setText('blerg') # IJ.log('blerg') # print('boop') self.got_exper(dc.getDirectory()) def close_al(self, e): self.dispatchEvent(WindowEvent(self, WindowEvent.WINDOW_CLOSING)) def run_al(self, e): # dt = br.dtic('Processed experiment {}'.format(self.exper.name)) t = br.tic() self.exper.make_data() self.exper.output_cell_cols_def() self.exper.output_nuc_cols_def() self.exper.output_new_hdings() self.exper.log('Processed experiment {} in {:.3f} seconds'.format( self.exper.name, br.toc(t))) # br.dtoc(dt) def rerun_al(self, e): # dt = br.dtic('Processed experiment {}'.format(self.exper.name)) # t = br.tic() self.exper = None self.got_exper(self.dir_path) self.run_al(None) # self.exper = # self.exper.make_data() # self.exper.output_cell_cols_def() # self.exper.output_nuc_cols_def() # self.exper.output_new_hdings() # # self.exper.log('Created and processed experiment {} in {:.3f} seconds'.format(self.exper.name, br.toc(t))) # br.dtoc(dt) # def meta_data_al(self, e) : # meta_data_path = self.exper.meta_data_path() # if not os.path.exists(meta_data_path) : # txt = make_meta_data_str(self.exper) # with open(meta_data_path, 'w') as f : # f.write(txt) # # IJ.open(meta_data_path) def mdf_create_al(self, e): meta_data_path = self.exper.meta_data_path() # if not os.path.exists(meta_data_path) : intens_im_list = [] for check_box in self.intens_im_boxes: if check_box.isSelected(): intens_im_list.append(check_box.getLabel()) txt = make_meta_data_str2(self.exper, intens_im_list) with open(meta_data_path, 'w') as f: f.write(txt) # IJ.open(meta_data_path) def mdf_open_al(self, e): meta_data_path = self.exper.meta_data_path() IJ.open(meta_data_path) def got_exper(self, dir_path): # IJ.log('exper') self.dir_path = dir_path self.dir_text_field.setText(self.dir_path) self.log_text = JTextArea() self.exper = bob_py.Exper(dir_path, gui=self) self.show_exper_info()
class BobGui(JFrame): def __init__(self): super(BobGui, self).__init__('BobPy') # cls = self.getClass() # print(cls) # self.setLayout(MigLayout()) self.setLayout(BorderLayout()) self.main_panel = JPanel() self.main_panel.setLayout(MigLayout()) dir_panel = JPanel() dir_panel.setLayout(BoxLayout(dir_panel, BoxLayout.X_AXIS)) dir_label = JLabel('Experiment Folder:') dir_panel.add(dir_label) self.dir_text_field = JTextField(10) self.dir_text_field.addActionListener( ActionListenerFactory(self, self.text_field_al)) dir_panel.add(self.dir_text_field) dir_button = JButton('open') dir_button.addActionListener( ActionListenerFactory(self, self.choose_dir_al)) dir_panel.add(dir_button) self.main_panel.add(dir_panel, 'growx, spanx, pushx, wrap') add_key_args(self.main_panel, 'close_w', ActionListenerFactory(self, self.close_al), KeyEvent.VK_W, Toolkit.getDefaultToolkit().getMenuShortcutKeyMask()) self.add(self.main_panel, BorderLayout.CENTER) self.setPreferredSize(Dimension(500, 400)) self.pack() self.setLocationRelativeTo(None) self.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE) self.setVisible(True) def show_exper_info_old(self): # sb = br.SimilarityBuilder() cab = br.CollectionArchetypeBuilder() for hseg in self.exper.hsegs(): all_file_dict = hseg.file_dict() all_file_dict.update(hseg.cell_file_dict()) all_file_dict.update(hseg.bin_file_dict()) cab.add_collection(hseg.name, all_file_dict) hseg_at, hseg_at_deviations = cab.get_archetype_info() at_str = '' for val in hseg_at: at_str += str(val) + '\n' chf_panel = self.make_chf_panel(at_str) hseg_tree_panel = self.make_hseg_tree_panel(hseg_at_deviations) self.split_pane = JSplitPane(JSplitPane.HORIZONTAL_SPLIT) self.split_pane.setOneTouchExpandable(True) self.split_pane.setContinuousLayout(True) self.split_pane.setResizeWeight(0.5) self.split_pane.add(chf_panel) self.split_pane.add(hseg_tree_panel) self.main_panel.add(self.split_pane, 'grow') self.revalidate() def show_exper_info(self): # sb = br.SimilarityBuilder() # cab = br.CollectionArchetypeBuilder() # # for hseg in self.exper.hsegs() : # all_file_dict = hseg.file_dict() # all_file_dict.update(hseg.cell_file_dict()) # all_file_dict.update(hseg.bin_file_dict()) # cab.add_collection(hseg.name, all_file_dict) # # hseg_at, hseg_at_deviations = cab.get_archetype_info() # # at_str = '' # for val in hseg_at : # at_str += str(val) + '\n' chf_panel = self.make_chf_panel() hseg_tree_panel = self.make_hseg_tree_panel() self.split_pane = JSplitPane(JSplitPane.HORIZONTAL_SPLIT) self.split_pane.setOneTouchExpandable(True) self.split_pane.setContinuousLayout(True) self.split_pane.setResizeWeight(0.5) self.split_pane.add(chf_panel) self.split_pane.add(hseg_tree_panel) self.main_panel.add(self.split_pane, 'grow') self.revalidate() def make_chf_panel_old(self, at_str): """ cf --> common hseg files """ chf_panel = JPanel() # chf_panel.setLayout(BoxLayout(chf_panel, BoxLayout.Y_AXIS)) chf_panel.setLayout(MigLayout('insets 0')) # chf_panel.setAlignmentX(Component.LEFT_ALIGNMENT) chf_label = JLabel('Common Hemeisegment Files') # chf_label.setAlignmentX(Component.LEFT_ALIGNMENT) chf_panel.add(chf_label, 'grow, wrap') chf_text_area = JTextArea(at_str) chf_panel.add(chf_text_area, 'grow, push, span') return chf_panel def make_chf_panel(self): """ chf --> common hseg files """ chf_panel = JPanel() # chf_panel.setLayout(BoxLayout(chf_panel, BoxLayout.Y_AXIS)) chf_panel.setLayout(MigLayout('insets 0')) # chf_panel.setAlignmentX(Component.LEFT_ALIGNMENT) chf_files_label = JLabel('Hemisegment cells') chf_files_text = JTextArea( BobGui.archetype_to_str( self.exper.hseg_cell_files_cab().archetype)) chf_panel.add(chf_files_label, 'growx, wrap') chf_panel.add(chf_files_text, 'grow, wrap') chf_files_label = JLabel('Hemisegment binary image files') chf_files_text = JTextArea( BobGui.archetype_to_str(self.exper.hseg_bin_files_cab().archetype)) chf_panel.add(chf_files_label, 'growx, wrap') chf_panel.add(chf_files_text, 'grow, wrap') chf_files_label = JLabel('Other hemisegment files') chf_files_text = JTextArea( BobGui.archetype_to_str(self.exper.hseg_files_cab().archetype)) chf_panel.add(chf_files_label, 'growx, wrap') chf_panel.add(chf_files_text, 'grow') # chf_label = JLabel('Common Hemeisegment Files') # # chf_label.setAlignmentX(Component.LEFT_ALIGNMENT) # # chf_panel.add(chf_label, 'grow, wrap') # # chf_text_area = JTextArea(at_str) # chf_panel.add(chf_text_area, 'grow, push, span') return chf_panel @staticmethod def archetype_to_str(archetype): at_str = '' for val in archetype: at_str += str(val) + '\n' return at_str # def make_hseg_tree_panel(self, hseg_at_deviations) : def make_hseg_tree_panel(self): root = DefaultMutableTreeNode(self.exper.name) for hseg in self.exper.hsegs(): hseg_node = DefaultMutableTreeNode(hseg.name) root.add(hseg_node) hseg_at_deviations = self.exper.hseg_all_files_cab( ).archetype_deviations if len(hseg_at_deviations[hseg.name]) > 0: for definer, file_names in hseg_at_deviations[ hseg.name].items(): for file_name in file_names: node_str = definer + ': ' + file_name temp = DefaultMutableTreeNode(node_str) hseg_node.add(temp) hseg_tree = JTree(root) hseg_tree.setCellRenderer(BobPyTreeCellRenderer()) hseg_scroll_pane = JScrollPane() hseg_scroll_pane.getViewport().setView((hseg_tree)) return hseg_scroll_pane def text_field_al(self, e): self.dir_path = self.dir_text_field.getText() self.got_exper(self.dir_path) def choose_dir_al(self, e): dc = DirectoryChooser('Choose a bob_py experiment folder') self.dir_path = dc.getDirectory() self.dir_text_field.setText(self.dir_path) self.got_exper(self.dir_path) def close_al(self, e): self.dispatchEvent(WindowEvent(self, WindowEvent.WINDOW_CLOSING)) def got_exper(self, dir_path): self.exper = bob_py.Exper(dir_path) self.show_exper_info()