def submit(self, add=True, dbpath=None, configpath=None, silent=False):
"""Submit this Job using qsub
add: Should this job be added to the JobDB database?
dbpath: Specify a non-default JobDB database
silent: do not print qsub stdout
Raises PBSError if error submitting the job.
"""
try:
self.jobID = misc_pbs.submit(substr=self.sub_string(),
silent=silent)
except misc.PBSError as e: #pylint: disable=invalid-name
raise e
if add:
db = jobdb.JobDB(dbpath=dbpath, configpath=configpath) #pylint: disable=invalid-name
status = jobdb.job_status_dict(jobid=self.jobID,
jobname=self.name,
rundir=os.getcwd(),
jobstatus="?",
auto=self.auto,
qsubstr=self.sub_string(),
walltime=misc.seconds(
self.walltime),
nodes=self.nodes,
procs=self.nodes * self.ppn)
db.add(status)
db.close()
def submit(self, add=True, dbpath=None):
"""Submit this Job using qsub
add: Should this job be added to the JobDB database?
dbpath: Specify a non-default JobDB database
Raises PBSError if error submitting the job.
"""
try:
self.jobID = misc.submit(qsubstr=self.qsub_string())
except PBSError as e:
raise e
if add:
db = jobdb.JobDB(dbpath=dbpath)
status = jobdb.job_status_dict(jobid = self.jobID, jobname = self.name, rundir = os.getcwd(), \
jobstatus = "?", auto = self.auto, qsubstr = self.qsub_string(), \
walltime = misc.seconds(self.walltime), nodes = self.nodes, procs = self.nodes*self.ppn)
db.add(status)
db.close()
def submit(self, add=True, dbpath=None):
"""Submit this Job using qsub
add: Should this job be added to the JobDB database?
dbpath: Specify a non-default JobDB database
Raises PBSError if error submitting the job.
"""
#TODO: fix generic exception catching
try:
self.jobID = misc.submit(qsubstr=self.qsub_string())
except Exception as e:
raise e
if add:
db = jobdb.JobDB(dbpath=dbpath)
status = jobdb.job_status_dict(jobid = self.jobID, jobname = self.name, rundir = os.getcwd(), \
jobstatus = "?", auto = self.auto, qsubstr = self.qsub_string(), \
walltime = misc.seconds(self.walltime), nodes = self.nodes, procs = self.nodes*self.ppn)
db.add(status)
db.close()