def test_backend_hinting_and_constraints_with_custom_backends(capsys):
# Custom backends can declare that they use threads and have shared memory
# semantics:
class MyCustomThreadingBackend(ParallelBackendBase):
supports_sharedmem = True
use_threads = True
def apply_async(self):
pass
def effective_n_jobs(self, n_jobs):
return n_jobs
with parallel_backend(MyCustomThreadingBackend()):
p = Parallel(n_jobs=2, prefer='processes') # ignored
assert type(p._backend) == MyCustomThreadingBackend
p = Parallel(n_jobs=2, require='sharedmem')
assert type(p._backend) == MyCustomThreadingBackend
class MyCustomProcessingBackend(ParallelBackendBase):
supports_sharedmem = False
use_threads = False
def apply_async(self):
pass
def effective_n_jobs(self, n_jobs):
return n_jobs
with parallel_backend(MyCustomProcessingBackend()):
p = Parallel(n_jobs=2, prefer='processes')
assert type(p._backend) == MyCustomProcessingBackend
out, err = capsys.readouterr()
assert out == ""
assert err == ""
p = Parallel(n_jobs=2, require='sharedmem', verbose=10)
assert type(p._backend) == ThreadingBackend
out, err = capsys.readouterr()
expected = ("Using ThreadingBackend as joblib.Parallel backend "
"instead of MyCustomProcessingBackend as the latter "
"does not provide shared memory semantics.")
assert out.strip() == expected
assert err == ""
with raises(ValueError):
Parallel(backend=MyCustomProcessingBackend(), require='sharedmem')
def test_thread_bomb_mitigation(backend):
# Test that recursive parallelism raises a recursion rather than
# saturating the operating system resources by creating a unbounded number
# of threads.
with parallel_backend(backend, n_jobs=2):
with raises(RecursionError):
_recursive_parallel()
def test_global_parallel_backend():
default = Parallel()._backend
pb = parallel_backend('threading')
assert isinstance(Parallel()._backend, ThreadingBackend)
pb.unregister()
assert type(Parallel()._backend) is type(default)
def test_external_backends():
def register_foo():
BACKENDS['foo'] = ThreadingBackend
EXTERNAL_BACKENDS['foo'] = register_foo
with parallel_backend('foo'):
assert isinstance(Parallel()._backend, ThreadingBackend)
def test_sklearn_cv():
iris = datasets.load_iris()
clf = svm.SVC(kernel='linear', C=1)
with parallel_backend('spark', n_jobs=3):
scores = cross_val_score(clf, iris.data, iris.target, cv=5)
expected = [0.97, 1.0, 0.97, 0.97, 1.0]
for i in range(5):
assert (pytest.approx(scores[i], 0.01) == expected[i])
# test with default n_jobs=-1
with parallel_backend('spark'):
scores = cross_val_score(clf, iris.data, iris.target, cv=5)
for i in range(5):
assert (pytest.approx(scores[i], 0.01) == expected[i])
def test_simple():
with parallel_backend('spark') as (ba, _):
seq = Parallel(n_jobs=5)(delayed(inc)(i) for i in range(10))
assert seq == [inc(i) for i in range(10)]
with pytest.raises(BaseException):
Parallel(n_jobs=5)(delayed(slow_raise_value_error)(i == 3)
for i in range(10))
def test_backend_hinting_and_constraints():
for n_jobs in [1, 2, -1]:
assert type(Parallel(n_jobs=n_jobs)._backend) == LokyBackend
p = Parallel(n_jobs=n_jobs, prefer='threads')
assert type(p._backend) == ThreadingBackend
p = Parallel(n_jobs=n_jobs, prefer='processes')
assert type(p._backend) == LokyBackend
p = Parallel(n_jobs=n_jobs, require='sharedmem')
assert type(p._backend) == ThreadingBackend
# Explicit backend selection can override backend hinting although it
# is useless to pass a hint when selecting a backend.
p = Parallel(n_jobs=2, backend='loky', prefer='threads')
assert type(p._backend) == LokyBackend
with parallel_backend('loky', n_jobs=2):
# Explicit backend selection by the user with the context manager
# should be respected when combined with backend hints only.
p = Parallel(prefer='threads')
assert type(p._backend) == LokyBackend
assert p.n_jobs == 2
with parallel_backend('loky', n_jobs=2):
# Locally hard-coded n_jobs value is respected.
p = Parallel(n_jobs=3, prefer='threads')
assert type(p._backend) == LokyBackend
assert p.n_jobs == 3
with parallel_backend('loky', n_jobs=2):
# Explicit backend selection by the user with the context manager
# should be ignored when the Parallel call has hard constraints.
# In this case, the default backend that supports shared mem is
# used an the default number of processes is used.
p = Parallel(require='sharedmem')
assert type(p._backend) == ThreadingBackend
assert p.n_jobs == 1
with parallel_backend('loky', n_jobs=2):
p = Parallel(n_jobs=3, require='sharedmem')
assert type(p._backend) == ThreadingBackend
assert p.n_jobs == 3
def test_nested_parallelism_with_dask():
distributed = pytest.importorskip('distributed')
client = distributed.Client(n_workers=2, threads_per_worker=2) # noqa
# 10 MB of data as argument to trigger implicit scattering
data = np.ones(int(1e7), dtype=np.uint8)
for i in range(2):
with parallel_backend('dask'):
backend_types_and_levels = _recursive_backend_info(data=data)
assert len(backend_types_and_levels) == 4
assert all(name == 'DaskDistributedBackend'
for name, _ in backend_types_and_levels)
# No argument
with parallel_backend('dask'):
backend_types_and_levels = _recursive_backend_info()
assert len(backend_types_and_levels) == 4
assert all(name == 'DaskDistributedBackend'
for name, _ in backend_types_and_levels)
def test_nested_parallel_limit(backend):
with parallel_backend(backend, n_jobs=2):
backend_types_and_levels = _recursive_backend_info()
top_level_backend_type = backend.title() + 'Backend'
expected_types_and_levels = [(top_level_backend_type, 0),
('ThreadingBackend', 1),
('SequentialBackend', 2),
('SequentialBackend', 3)]
assert backend_types_and_levels == expected_types_and_levels
async def get_variables():
global PROJECTS
global WITH_UPVOTE
global UPTIME
UPTIME['MRBV_SECONDS_VARIABLES'] = time.time() + MRBV_SECONDS_VARIABLES
this_PROJECTS = copy.copy(PROJECTS)
# issue https://github.com/scikit-learn/scikit-learn/issues/8920
with parallel_backend('threading'):
data = Parallel(n_jobs=4)(delayed(check_project_upvote)(project) for project in this_PROJECTS)
WITH_UPVOTE = [i for i in data if i is not None]
print(f"found {len(WITH_UPVOTE)} MRBV_BOT_UPVOTE in {len(PROJECTS)} projects")
def test_nested_backend_context_manager():
# Check that by default, nested parallel calls will always use the
# ThreadingBackend
def get_nested_pids():
assert _active_backend_type() == ThreadingBackend
return Parallel(n_jobs=2)(delayed(os.getpid)() for _ in range(2))
for backend in ['threading', 'loky', 'multiprocessing']:
with parallel_backend(backend):
pid_groups = Parallel(n_jobs=2)(delayed(get_nested_pids)()
for _ in range(10))
for pid_group in pid_groups:
assert len(set(pid_group)) == 1
async def get_merges():
global WITH_UPVOTE
global MERGE_REQUESTS
global PROJECTS
global UPTIME
UPTIME['MRBV_GET_SECONDS_MERGE'] = time.time() + MRBV_GET_SECONDS_MERGE
this_WITH_UPVOTE = copy.copy(WITH_UPVOTE)
with parallel_backend('threading'):
data = Parallel(n_jobs=4)(delayed(check_merge_upvote)(data) for data in this_WITH_UPVOTE)
buff = []
for mergerequests in [i for i in data if i is not None]:
buff = buff + mergerequests
MERGE_REQUESTS = buff
print(f"found {len(MERGE_REQUESTS)} merges with {len(WITH_UPVOTE)} MRBV_BOT_UPVOTE in {len(PROJECTS)} projects")
def check_backend_context_manager(backend_name):
with parallel_backend(backend_name, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert_equal(active_n_jobs, 3)
assert_equal(effective_n_jobs(3), 3)
p = Parallel()
assert_equal(p.n_jobs, 3)
if backend_name == "multiprocessing":
assert_equal(type(active_backend), MultiprocessingBackend)
assert_equal(type(p._backend), MultiprocessingBackend)
elif backend_name == "threading":
assert_equal(type(active_backend), ThreadingBackend)
assert_equal(type(p._backend), ThreadingBackend)
elif backend_name.startswith("test_"):
assert_equal(type(active_backend), FakeParallelBackend)
assert_equal(type(p._backend), FakeParallelBackend)
def check_backend_context_manager(backend_name):
with parallel_backend(backend_name, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert active_n_jobs == 3
assert effective_n_jobs(3) == 3
p = Parallel()
assert p.n_jobs == 3
if backend_name == 'multiprocessing':
assert type(active_backend) == MultiprocessingBackend
assert type(p._backend) == MultiprocessingBackend
elif backend_name == 'threading':
assert type(active_backend) == ThreadingBackend
assert type(p._backend) == ThreadingBackend
elif backend_name.startswith('test_'):
assert type(active_backend) == FakeParallelBackend
assert type(p._backend) == FakeParallelBackend
def __call__(self):
# Exactly the same as in BatchedCalls, with the
# difference being that it gets args and kwargs from
# object store (which have been put in there by
# put_items_in_object_store)
# Set the default nested backend to self._backend but do
# not set the change the default number of processes to -1
with parallel_backend(self._backend, n_jobs=self._n_jobs):
return [
func(
*[ray_get_if_needed(arg) for arg in args],
**{k: ray_get_if_needed(v) for k, v in kwargs.items()},
)
for func, args, kwargs in self.items
]
def check_backend_context_manager(backend_name):
with parallel_backend(backend_name, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert active_n_jobs == 3
assert effective_n_jobs(3) == 3
p = Parallel()
assert p.n_jobs == 3
if backend_name == 'multiprocessing':
assert type(active_backend) == MultiprocessingBackend
assert type(p._backend) == MultiprocessingBackend
elif backend_name == 'threading':
assert type(active_backend) == ThreadingBackend
assert type(p._backend) == ThreadingBackend
elif backend_name.startswith('test_'):
assert type(active_backend) == FakeParallelBackend
assert type(p._backend) == FakeParallelBackend
def check_backend_context_manager(backend_name):
with parallel_backend(backend_name, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert_equal(active_n_jobs, 3)
assert_equal(effective_n_jobs(3), 3)
p = Parallel()
assert_equal(p.n_jobs, 3)
if backend_name == 'multiprocessing':
assert_equal(type(active_backend), MultiprocessingBackend)
assert_equal(type(p._backend), MultiprocessingBackend)
elif backend_name == 'threading':
assert_equal(type(active_backend), ThreadingBackend)
assert_equal(type(p._backend), ThreadingBackend)
elif backend_name.startswith('test_'):
assert_equal(type(active_backend), FakeParallelBackend)
assert_equal(type(p._backend), FakeParallelBackend)
def test_nested_parallelism_limit(backend):
with parallel_backend(backend, n_jobs=2):
backend_types_and_levels = _recursive_backend_info()
if cpu_count() == 1:
second_level_backend_type = 'SequentialBackend'
else:
second_level_backend_type = 'ThreadingBackend'
top_level_backend_type = backend.title() + 'Backend'
expected_types_and_levels = [
(top_level_backend_type, 0),
(second_level_backend_type, 1),
('SequentialBackend', 2),
('SequentialBackend', 3)
]
assert backend_types_and_levels == expected_types_and_levels
def test_direct_parameterized_backend_context_manager():
assert _active_backend_type() == MultiprocessingBackend
# Check that it's possible to pass a backend instance directly,
# without registration
with parallel_backend(ParameterizedParallelBackend(param=43), n_jobs=5):
active_backend, active_n_jobs = parallel.get_active_backend()
assert type(active_backend) == ParameterizedParallelBackend
assert active_backend.param == 43
assert active_n_jobs == 5
p = Parallel()
assert p.n_jobs == 5
assert p._backend is active_backend
results = p(delayed(sqrt)(i) for i in range(5))
assert results == [sqrt(i) for i in range(5)]
# The default backend is again retored
assert _active_backend_type() == MultiprocessingBackend
def test_direct_parameterized_backend_context_manager():
assert_equal(_active_backend_type(), MultiprocessingBackend)
# Check that it's possible to pass a backend instance directly,
# without registration
with parallel_backend(ParameterizedParallelBackend(param=43), n_jobs=5):
active_backend, active_n_jobs = parallel.get_active_backend()
assert_equal(type(active_backend), ParameterizedParallelBackend)
assert_equal(active_backend.param, 43)
assert_equal(active_n_jobs, 5)
p = Parallel()
assert_equal(p.n_jobs, 5)
assert_true(p._backend is active_backend)
results = p(delayed(sqrt)(i) for i in range(5))
assert_equal(results, [sqrt(i) for i in range(5)])
# The default backend is again retored
assert_equal(_active_backend_type(), MultiprocessingBackend)
def test_direct_parameterized_backend_context_manager():
assert_equal(_active_backend_type(), MultiprocessingBackend)
# Check that it's possible to pass a backend instance directly,
# without registration
with parallel_backend(ParameterizedParallelBackend(param=43), n_jobs=5):
active_backend, active_n_jobs = parallel.get_active_backend()
assert_equal(type(active_backend), ParameterizedParallelBackend)
assert_equal(active_backend.param, 43)
assert_equal(active_n_jobs, 5)
p = Parallel()
assert_equal(p.n_jobs, 5)
assert_true(p._backend is active_backend)
results = p(delayed(sqrt)(i) for i in range(5))
assert_equal(results, [sqrt(i) for i in range(5)])
# The default backend is again retored
assert_equal(_active_backend_type(), MultiprocessingBackend)
def test_direct_parameterized_backend_context_manager():
assert _active_backend_type() == DefaultBackend
# Check that it's possible to pass a backend instance directly,
# without registration
with parallel_backend(ParameterizedParallelBackend(param=43), n_jobs=5):
active_backend, active_n_jobs = parallel.get_active_backend()
assert type(active_backend) == ParameterizedParallelBackend
assert active_backend.param == 43
assert active_n_jobs == 5
p = Parallel()
assert p.n_jobs == 5
assert p._backend is active_backend
results = p(delayed(sqrt)(i) for i in range(5))
assert results == [sqrt(i) for i in range(5)]
# The default backend is again restored
assert _active_backend_type() == DefaultBackend
def test_parameterized_backend_context_manager(monkeypatch):
monkeypatch.setitem(BACKENDS, 'param_backend',
ParameterizedParallelBackend)
assert _active_backend_type() == DefaultBackend
with parallel_backend('param_backend', param=42, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert type(active_backend) == ParameterizedParallelBackend
assert active_backend.param == 42
assert active_n_jobs == 3
p = Parallel()
assert p.n_jobs == 3
assert p._backend is active_backend
results = p(delayed(sqrt)(i) for i in range(5))
assert results == [sqrt(i) for i in range(5)]
# The default backend is again restored
assert _active_backend_type() == DefaultBackend
def test_retrieval_context():
import contextlib
class MyBackend(ThreadingBackend):
i = 0
@contextlib.contextmanager
def retrieval_context(self):
self.i += 1
yield
register_parallel_backend("retrieval", MyBackend)
def nested_call(n):
return Parallel(n_jobs=2)(delayed(id)(i) for i in range(n))
with parallel_backend("retrieval") as (ba, _):
Parallel(n_jobs=2)(delayed(nested_call, check_pickle=False)(i)
for i in range(5))
assert ba.i == 1
def test_parameterized_backend_context_manager():
register_parallel_backend('param_backend', ParameterizedParallelBackend)
try:
assert _active_backend_type() == MultiprocessingBackend
with parallel_backend('param_backend', param=42, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert type(active_backend) == ParameterizedParallelBackend
assert active_backend.param == 42
assert active_n_jobs == 3
p = Parallel()
assert p.n_jobs == 3
assert p._backend is active_backend
results = p(delayed(sqrt)(i) for i in range(5))
assert results == [sqrt(i) for i in range(5)]
# The default backend is again retored
assert _active_backend_type() == MultiprocessingBackend
finally:
del BACKENDS['param_backend']
def test_parameterized_backend_context_manager():
register_parallel_backend('param_backend', ParameterizedParallelBackend)
try:
assert_equal(_active_backend_type(), MultiprocessingBackend)
with parallel_backend('param_backend', param=42, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert_equal(type(active_backend), ParameterizedParallelBackend)
assert_equal(active_backend.param, 42)
assert_equal(active_n_jobs, 3)
p = Parallel()
assert_equal(p.n_jobs, 3)
assert_true(p._backend is active_backend)
results = p(delayed(sqrt)(i) for i in range(5))
assert_equal(results, [sqrt(i) for i in range(5)])
# The default backend is again retored
assert_equal(_active_backend_type(), MultiprocessingBackend)
finally:
del BACKENDS['param_backend']
def test_parameterized_backend_context_manager():
register_parallel_backend("param_backend", ParameterizedParallelBackend)
try:
assert_equal(_active_backend_type(), MultiprocessingBackend)
with parallel_backend("param_backend", param=42, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert_equal(type(active_backend), ParameterizedParallelBackend)
assert_equal(active_backend.param, 42)
assert_equal(active_n_jobs, 3)
p = Parallel()
assert_equal(p.n_jobs, 3)
assert_true(p._backend is active_backend)
results = p(delayed(sqrt)(i) for i in range(5))
assert_equal(results, [sqrt(i) for i in range(5)])
# The default backend is again retored
assert_equal(_active_backend_type(), MultiprocessingBackend)
finally:
del BACKENDS["param_backend"]
def test_parameterized_backend_context_manager():
register_parallel_backend('param_backend', ParameterizedParallelBackend)
try:
assert _active_backend_type() == MultiprocessingBackend
with parallel_backend('param_backend', param=42, n_jobs=3):
active_backend, active_n_jobs = parallel.get_active_backend()
assert type(active_backend) == ParameterizedParallelBackend
assert active_backend.param == 42
assert active_n_jobs == 3
p = Parallel()
assert p.n_jobs == 3
assert p._backend is active_backend
results = p(delayed(sqrt)(i) for i in range(5))
assert results == [sqrt(i) for i in range(5)]
# The default backend is again retored
assert _active_backend_type() == MultiprocessingBackend
finally:
del BACKENDS['param_backend']
def run(allpool, test):
# return [runOptLearn(allpool[0])]
if test:
result = [runOptLearn(p, test) for p in allpool]
else:
with parallel_backend('threading'):
result = (Parallel()(delayed(runOptLearn)(p) for p in allpool))
success = []
fail = []
for i in range(len(result)):
if (result[i].success):
success.append(result[i])
else:
logger.error("!!!FAILED: %d %s", i, result[i].shortname)
fail.append(result[i])
# for pool in allpool:
# runOptLearn(pool)
# break;
logger.debug('finish')
return success, fail
help="The path where all models directories are")
parser.add_argument("--output_path",
default=None,
type=str,
help="The path to dump yaml file")
parser.add_argument("--n_jobs",
default=4,
type=int,
help="number of cores")
args = parser.parse_args()
return args
if __name__ == "__main__":
args = input_arguments()
benches = load_benchmark_settings()
benches = {k: v for k, v in benches.items() if check_key(k)}
with parallel_backend(backend="multiprocessing", n_jobs=args.n_jobs):
dicts = Parallel()(delayed(update_dict_entry)(key, args.path)
for key, value in benches.items())
tabular_dict = dict()
for entry in dicts:
tabular_dict.update(entry)
print("Collected {} keys...".format(len(tabular_dict)))
with open(os.path.join(args.output_path, "tabular_plot_config.yaml"),
"w") as f:
f.writelines(yaml.dump(tabular_dict))
print("Done!")
# each task-config-fidelity would have been evaluated on a different seed
obj = {
config_hash: {
fidelity_hash: {
seed: v
}
}
}
task_datas[task_id] = update_table_with_new_entry(task_datas[task_id], obj)
file_count += 1
try:
# deleting data file that was processed
os.remove(os.path.join(dump_path, filename))
# os.remove(os.path.join(dump_path, filename))
except FileNotFoundError:
continue
logger.info("\tFinished batch processing in {:.3f} seconds".format(time.time() - start))
logger.info("\tUpdating benchmark data files...")
with parallel_backend(backend="loky", n_jobs=args.n_jobs):
Parallel()(
delayed(save_task_file)(task_id, obj, output_path) for task_id, obj in task_datas.items()
)
logger.info("\tContinuing to next batch")
logger.info("\t{}".format("-" * 25))
logger.info("Done!")
logger.info("Total files processed: {}".format(file_count))
def check_backend_context_manager(backend_name):
with parallel_backend(backend_name):
assert_equal(parallel.get_default_backend(), backend_name)
