class PaginationObj(JsonObject):
count = IntegerProperty()
total = IntegerProperty()
size = IntegerProperty()
next = StringProperty()
previous = StringProperty()
sort = StringProperty()
order = StringProperty(choices=['asc', 'desc'])
class ShardMeta(JsonObject, LooslyEqualJsonObject):
id = IntegerProperty()
dbname = StringProperty()
host = StringProperty()
port = IntegerProperty()
def get_server_option_string(self):
return SHARD_OPTION_TEMPLATE.format(**self)
class FileTypeSummary(AzulJsonObject):
format = StringProperty()
fileSource = ListProperty() # List could have string(s) and/or None
count = IntegerProperty()
totalSize = FloatProperty()
matrixCellCount = FloatProperty()
isIntermediate = BooleanProperty()
contentDescription = ListProperty(
) # List could have string(s) and/or None
@classmethod
def for_bucket(cls, bucket: JSON) -> 'FileTypeSummary':
self = cls()
self.count = bucket['doc_count']
self.totalSize = bucket['size_by_type']['value']
self.matrixCellCount = bucket['matrix_cell_count_by_type']['value']
self.format = bucket['key']
return self
@classmethod
def for_aggregate(cls, aggregate_file: JSON) -> 'FileTypeSummary':
self = cls()
self.count = aggregate_file['count']
self.fileSource = aggregate_file['file_source']
self.totalSize = aggregate_file['size']
self.matrixCellCount = aggregate_file['matrix_cell_count']
self.format = aggregate_file['file_format']
self.isIntermediate = aggregate_file['is_intermediate']
self.contentDescription = aggregate_file['content_description']
assert isinstance(self.format, str), type(str)
assert self.format
return self
class ImportSummary(JsonObject):
"""
Import processes are contained in an Object of type Import Summary
that is represented in this object. Typically an import summary offers
the following information:
total objects,
objects deleted,
objects ignored,
objects updated
objects created
"""
total = IntegerProperty(required=True)
created = IntegerProperty(required=True)
updated = IntegerProperty(required=True)
deleted = IntegerProperty(required=True)
ignored = IntegerProperty(required=True)
class OrganCellCountSummary(JsonObject):
organType = ListProperty(
) # List could have strings and/or None (eg. ['Brain', 'Skin', None])
countOfDocsWithOrganType = IntegerProperty()
totalCellCountByOrgan = FloatProperty()
@classmethod
def for_bucket(cls, bucket: JSON) -> 'OrganCellCountSummary':
self = cls()
self.organType = [bucket['key']]
self.countOfDocsWithOrganType = bucket['doc_count']
self.totalCellCountByOrgan = bucket['cell_count']['value']
return self
class FileTypeSummary(JsonObject):
fileType = StringProperty()
count = IntegerProperty()
totalSize = IntegerProperty()
@classmethod
def for_bucket(cls, bucket: JSON) -> 'FileTypeSummary':
self = cls()
self.count = bucket['doc_count']
self.totalSize = int(
bucket['size_by_type']
['value']) # Casting to integer since ES returns a double
self.fileType = bucket['key']
return self
@classmethod
def for_aggregate(cls, aggregate_file: JSON) -> 'FileTypeSummary':
self = cls()
self.count = aggregate_file['count']
self.totalSize = aggregate_file['size']
self.fileType = aggregate_file['file_format']
assert isinstance(self.fileType, str)
assert len(self.fileType)
return self
class SummaryRepresentation(JsonObject):
projectCount = IntegerProperty()
specimenCount = IntegerProperty()
speciesCount = IntegerProperty()
fileCount = IntegerProperty()
totalFileSize = FloatProperty()
donorCount = IntegerProperty()
labCount = IntegerProperty()
totalCellCount = FloatProperty()
organTypes = ListProperty(StringProperty(required=False))
fileTypeSummaries = ListProperty(FileTypeSummary)
cellCountSummaries = ListProperty(OrganCellCountSummary)
class ProcessInfo(JsonObject):
host = StringProperty() # not in the API
name = StringProperty()
group = StringProperty()
start = IntegerProperty()
stop = IntegerProperty()
now = IntegerProperty()
state = IntegerProperty()
statename = StringProperty()
spawnerr = StringProperty()
exitstatus = IntegerProperty()
stdout_logfile = StringProperty()
stderr_logfile = StringProperty()
pid = IntegerProperty()
class SchedulerModuleInfo(JsonObject):
# Set to True to enable setting the start date of any schedule instances
# based on the visit scheduler info details below
enabled = BooleanProperty(default=False)
# The app that contains the visit scheduler form being referenced
app_id = StringProperty()
# The unique_id of the visit scheduler form in the above app
form_unique_id = StringProperty()
# The visit number from which to pull the start date for any schedule
# instances; this should be the 0-based index in the FormSchedule.visits list
visit_number = IntegerProperty()
# VISIT_WINDOW_START - the start date used will be the first date in the window
# VISIT_WINDOW_END - the start date used will be the last date in the window
# VISIT_WINDOW_DUE_DATE - the start date used will be the due date of the visit
window_position = StringProperty(choices=[
VISIT_WINDOW_START, VISIT_WINDOW_END, VISIT_WINDOW_DUE_DATE
])
class FacetObj(JsonObject):
terms = ListProperty(AbstractTermObj)
total = IntegerProperty()
_type = StringProperty(name='type')
class AbstractTermObj(JsonObject):
count = IntegerProperty()