def html_table(row_inp,iter):
logger.info("iteration: " + str(iter))
chemical_name.append(row_inp[0])
l_kow.append(float(row_inp[1]))
k_oc.append(float(row_inp[2]))
c_wdp.append(float(row_inp[3]) / 1000000)
water_column_EEC.append(float(row_inp[4]))
c_wto.append(float(row_inp[4]) / 1000000)
mineau.append(float(row_inp[5]))
x_poc.append(float(row_inp[6]))
x_doc.append(float(row_inp[7]))
c_ox.append(float(row_inp[8]))
w_t.append(float(row_inp[9]))
c_ss.append(float(row_inp[10]))
oc.append(float(row_inp[11]) / 100)
k_ow.append(10**(float(row_inp[1])))
b_species.append(row_inp[12])
bw_quail.append(float(row_inp[13]))
bw_duck.append(float(row_inp[14]))
bwb_other.append(float(row_inp[15]))
avian_ld50.append(float(row_inp[16]))
avian_lc50.append(float(row_inp[17]))
avian_noaec.append(float(row_inp[18]))
m_species.append(row_inp[19])
bw_rat.append(float(row_inp[20]))
bwm_other.append(float(row_inp[21]))
mammalian_ld50.append(float(row_inp[22]))
mammalian_lc50.append(float(row_inp[23]))
mammalian_chronic_endpoint.append(float(row_inp[24]))
lf_p_sediment.append(float(row_inp[25]) / 100)
lf_p_phytoplankton.append(float(row_inp[26]) / 100)
lf_p_zooplankton.append(float(row_inp[27]) / 100)
lf_p_benthic_invertebrates.append(float(row_inp[28]) / 100)
lf_p_filter_feeders.append(float(row_inp[29]) / 100)
lf_p_small_fish.append(float(row_inp[30]) / 100)
lf_p_medium_fish.append(float(row_inp[31]) / 100)
mf_p_sediment.append(float(row_inp[32]))
mf_p_phytoplankton.append(float(row_inp[33]))
mf_p_zooplankton.append(float(row_inp[34]))
mf_p_benthic_invertebrates.append(float(row_inp[35]) / 100)
mf_p_filter_feeders.append(float(row_inp[36]))
mf_p_small_fish.append(float(row_inp[37]) / 100)
sf_p_sediment.append(float(row_inp[38]))
sf_p_phytoplankton.append(float(row_inp[39]))
sf_p_zooplankton.append(float(row_inp[40]) / 100)
sf_p_benthic_invertebrates.append(float(row_inp[41]) / 100)
sf_p_filter_feeders.append(float(row_inp[42]))
ff_p_sediment.append(float(row_inp[43]) / 100)
ff_p_phytoplankton.append(float(row_inp[44]) / 100)
ff_p_zooplankton.append(float(row_inp[45]) / 100)
ff_p_benthic_invertebrates.append(float(row_inp[46]))
beninv_p_sediment.append(float(row_inp[47]) / 100)
beninv_p_phytoplankton.append(float(row_inp[48]) / 100)
beninv_p_zooplankton.append(float(row_inp[49]) / 100)
zoo_p_sediment.append(float(row_inp[50]))
zoo_p_phyto.append(float(row_inp[51]) / 100)
s_lipid.append(float(row_inp[52]) / 100)
s_NLOM.append(float(row_inp[53]) / 100)
s_water.append(float(row_inp[54]) / 100)
v_lb_phytoplankton.append(float(row_inp[55]) / 100)
v_nb_phytoplankton.append(float(row_inp[56]) / 100)
v_wb_phytoplankton.append(float(row_inp[57]) / 100)
wb_zoo.append(float(row_inp[58]))
v_lb_zoo.append(float(row_inp[59]) / 100)
v_nb_zoo.append(float(row_inp[60]) / 100)
v_wb_zoo.append(float(row_inp[61]) / 100)
wb_beninv.append(float(row_inp[62]))
v_lb_beninv.append(float(row_inp[63]) / 100)
v_nb_beninv.append(float(row_inp[64]) / 100)
v_wb_beninv.append(float(row_inp[65]) / 100)
wb_ff.append(float(row_inp[66]))
v_lb_ff.append(float(row_inp[67]) / 100)
v_nb_ff.append(float(row_inp[68]) / 100)
v_wb_ff.append(float(row_inp[69]) / 100)
wb_sf.append(float(row_inp[70]))
v_lb_sf.append(float(row_inp[71]) / 100)
v_nb_sf.append(float(row_inp[72]) / 100)
v_wb_sf.append(float(row_inp[73]) / 100)
wb_mf.append(float(row_inp[74]))
v_lb_mf.append(float(row_inp[75]) / 100)
v_nb_mf.append(float(row_inp[76]) / 100)
v_wb_mf.append(float(row_inp[77]) / 100)
wb_lf.append(float(row_inp[78]))
v_lb_lf.append(float(row_inp[79]) / 100)
v_nb_lf.append(float(row_inp[80]) / 100)
v_wb_lf.append(float(row_inp[81]) / 100)
kg_phytoplankton.append(float(row_inp[82]))
kd_phytoplankton.append(float(row_inp[83]))
ke_phytoplankton.append(float(row_inp[84]))
mo_phytoplankton.append(float(row_inp[85]))
mp_phytoplankton.append(float(row_inp[86]))
km_phytoplankton.append(float(row_inp[87]))
km_zoo.append(float(row_inp[88]))
k1_phytoplankton.append(float(row_inp[89]))
k2_phytoplankton.append(float(row_inp[90]))
k1_zoo.append(float(row_inp[91]))
k2_zoo.append(float(row_inp[92]))
kd_zoo.append(float(row_inp[93]))
ke_zoo.append(float(row_inp[94]))
k1_beninv.append(float(row_inp[95]))
k2_beninv.append(float(row_inp[96]))
kd_beninv.append(float(row_inp[97]))
ke_beninv.append(float(row_inp[98]))
km_beninv.append(float(row_inp[99]))
k1_ff.append(float(row_inp[100]))
k2_ff.append(float(row_inp[101]))
kd_ff.append(float(row_inp[102]))
ke_ff.append(float(row_inp[103]))
km_ff.append(float(row_inp[104]))
k1_sf.append(float(row_inp[105]))
k2_sf.append(float(row_inp[106]))
kd_sf.append(float(row_inp[107]))
ke_sf.append(float(row_inp[108]))
km_sf.append(float(row_inp[109]))
k1_mf.append(float(row_inp[110]))
k2_mf.append(float(row_inp[111]))
kd_mf.append(float(row_inp[112]))
ke_mf.append(float(row_inp[113]))
km_mf.append(float(row_inp[114]))
k1_lf.append(float(row_inp[115]))
k2_lf.append(float(row_inp[116]))
kd_lf.append(float(row_inp[117]))
ke_lf.append(float(row_inp[118]))
km_lf.append(float(row_inp[119]))
rate_constants.append(row_inp[120])
kabam_obj = kabam_model.kabam(
True,True,'batch', chemical_name[iter],l_kow[iter],k_oc[iter],c_wdp[iter],water_column_EEC[iter],c_wto[iter],mineau[iter],x_poc[iter],x_doc[iter],c_ox[iter],w_t[iter],c_ss[iter],oc[iter],k_ow[iter],
b_species[iter],bw_quail[iter],bw_duck[iter],bwb_other[iter],avian_ld50[iter],avian_lc50[iter],avian_noaec[iter],m_species[iter],bw_rat[iter],bwm_other[iter],mammalian_ld50[iter],mammalian_lc50[iter],mammalian_chronic_endpoint[iter],
lf_p_sediment[iter],lf_p_phytoplankton[iter],lf_p_zooplankton[iter],lf_p_benthic_invertebrates[iter],lf_p_filter_feeders[iter],lf_p_small_fish[iter],lf_p_medium_fish[iter],
mf_p_sediment[iter],mf_p_phytoplankton[iter],mf_p_zooplankton[iter],mf_p_benthic_invertebrates[iter],mf_p_filter_feeders[iter],mf_p_small_fish[iter],
sf_p_sediment[iter],sf_p_phytoplankton[iter],sf_p_zooplankton[iter],sf_p_benthic_invertebrates[iter],sf_p_filter_feeders[iter],
ff_p_sediment[iter],ff_p_phytoplankton[iter],ff_p_zooplankton[iter],ff_p_benthic_invertebrates[iter],
beninv_p_sediment[iter],beninv_p_phytoplankton[iter],beninv_p_zooplankton[iter],
zoo_p_sediment[iter],zoo_p_phyto[iter],
s_lipid[iter],s_NLOM[iter],s_water[iter],
v_lb_phytoplankton[iter],v_nb_phytoplankton[iter],v_wb_phytoplankton[iter],wb_zoo[iter],v_lb_zoo[iter],v_nb_zoo[iter],v_wb_zoo[iter],wb_beninv[iter],v_lb_beninv[iter],v_nb_beninv[iter],v_wb_beninv[iter],wb_ff[iter],v_lb_ff[iter],v_nb_ff[iter],v_wb_ff[iter],wb_sf[iter],v_lb_sf[iter],v_nb_sf[iter],v_wb_sf[iter],wb_mf[iter],v_lb_mf[iter],v_nb_mf[iter],v_wb_mf[iter],wb_lf[iter],v_lb_lf[iter],v_nb_lf[iter],v_wb_lf[iter],
kg_phytoplankton[iter],kd_phytoplankton[iter],ke_phytoplankton[iter],mo_phytoplankton[iter],mp_phytoplankton[iter],km_phytoplankton[iter],km_zoo[iter],
k1_phytoplankton[iter],k2_phytoplankton[iter],
k1_zoo[iter],k2_zoo[iter],kd_zoo[iter],ke_zoo[iter],k1_beninv[iter],k2_beninv[iter],kd_beninv[iter],ke_beninv[iter],km_beninv[iter],
k1_ff[iter],k2_ff[iter],kd_ff[iter],ke_ff[iter],km_ff[iter],k1_sf[iter],k2_sf[iter],kd_sf[iter],ke_sf[iter],km_sf[iter],k1_mf[iter],k2_mf[iter],kd_mf[iter],ke_mf[iter],km_mf[iter],k1_lf[iter],k2_lf[iter],kd_lf[iter],ke_lf[iter],km_lf[iter],
rate_constants[iter]
)
# kabam_obj = kabam_model.kabam(
# True,True,'batch', chemical_name[iter-1],l_kow[iter-1],k_oc[iter-1],c_wdp[iter-1],water_column_EEC[iter-1],c_wto[iter-1],mineau[iter-1],x_poc[iter-1],x_doc[iter-1],c_ox[iter-1],w_t[iter-1],c_ss[iter-1],oc[iter-1],k_ow[iter-1],
# b_species[iter-1],bw_quail[iter-1],bw_duck[iter-1],bwb_other[iter-1],avian_ld50[iter-1],avian_lc50[iter-1],avian_noaec[iter-1],m_species[iter-1],bw_rat[iter-1],bwm_other[iter-1],mammalian_ld50[iter-1],mammalian_lc50[iter-1],mammalian_chronic_endpoint[iter-1],
# lf_p_sediment[iter-1],lf_p_phytoplankton[iter-1],lf_p_zooplankton[iter-1],lf_p_benthic_invertebrates[iter-1],lf_p_filter_feeders[iter-1],lf_p_small_fish[iter-1],lf_p_medium_fish[iter-1],
# mf_p_sediment[iter-1],mf_p_phytoplankton[iter-1],mf_p_zooplankton[iter-1],mf_p_benthic_invertebrates[iter-1],mf_p_filter_feeders[iter-1],mf_p_small_fish[iter-1],
# sf_p_sediment[iter-1],sf_p_phytoplankton[iter-1],sf_p_zooplankton[iter-1],sf_p_benthic_invertebrates[iter-1],sf_p_filter_feeders[iter-1],
# ff_p_sediment[iter-1],ff_p_phytoplankton[iter-1],ff_p_zooplankton[iter-1],ff_p_benthic_invertebrates[iter-1],
# beninv_p_sediment[iter-1],beninv_p_phytoplankton[iter-1],beninv_p_zooplankton[iter-1],
# zoo_p_sediment[iter-1],zoo_p_phyto[iter-1],
# s_lipid[iter-1],s_NLOM[iter-1],s_water[iter-1],
# v_lb_phytoplankton[iter-1],v_nb_phytoplankton[iter-1],v_wb_phytoplankton[iter-1],wb_zoo[iter-1],v_lb_zoo[iter-1],v_nb_zoo[iter-1],v_wb_zoo[iter-1],wb_beninv[iter-1],v_lb_beninv[iter-1],v_nb_beninv[iter-1],v_wb_beninv[iter-1],wb_ff[iter-1],v_lb_ff[iter-1],v_nb_ff[iter-1],v_wb_ff[iter-1],wb_sf[iter-1],v_lb_sf[iter-1],v_nb_sf[iter-1],v_wb_sf[iter-1],wb_mf[iter-1],v_lb_mf[iter-1],v_nb_mf[iter-1],v_wb_mf[iter-1],wb_lf[iter-1],v_lb_lf[iter-1],v_nb_lf[iter-1],v_wb_lf[iter-1],
# kg_phytoplankton[iter-1],kd_phytoplankton[iter-1],ke_phytoplankton[iter-1],mo_phytoplankton[iter-1],mp_phytoplankton[iter-1],km_phytoplankton[iter-1],km_zoo[iter-1],
# k1_phytoplankton[iter-1],k2_phytoplankton[iter-1],
# k1_zoo[iter-1],k2_zoo[iter-1],kd_zoo[iter-1],ke_zoo[iter-1],k1_beninv[iter-1],k2_beninv[iter-1],kd_beninv[iter-1],ke_beninv[iter-1],km_beninv[iter-1],
# k1_ff[iter-1],k2_ff[iter-1],kd_ff[iter-1],ke_ff[iter-1],km_ff[iter-1],k1_sf[iter-1],k2_sf[iter-1],kd_sf[iter-1],ke_sf[iter-1],km_sf[iter-1],k1_mf[iter-1],k2_mf[iter-1],kd_mf[iter-1],ke_mf[iter-1],km_mf[iter-1],k1_lf[iter-1],k2_lf[iter-1],kd_lf[iter-1],ke_lf[iter-1],km_lf[iter-1],
# rate_constants[iter-1]
# )
cb_phytoplankton.append(kabam_obj.cb_phytoplankton)
cb_zoo.append(kabam_obj.cb_zoo)
cb_beninv.append(kabam_obj.cb_beninv)
cb_ff.append(kabam_obj.cb_ff)
cb_sf.append(kabam_obj.cb_sf)
cb_mf.append(kabam_obj.cb_mf)
cb_lf.append(kabam_obj.cb_lf)
cbl_phytoplankton.append(kabam_obj.cbl_phytoplankton)
cbl_zoo.append(kabam_obj.cbl_zoo)
cbl_beninv.append(kabam_obj.cbl_beninv)
cbl_ff.append(kabam_obj.cbl_ff)
cbl_sf.append(kabam_obj.cbl_sf)
cbl_mf.append(kabam_obj.cbl_mf)
cbl_lf.append(kabam_obj.cbl_lf)
cbd_zoo.append(kabam_obj.cbd_zoo)
cbd_beninv.append(kabam_obj.cbd_beninv)
cbd_ff.append(kabam_obj.cbd_ff)
cbd_sf.append(kabam_obj.cbd_sf)
cbd_mf.append(kabam_obj.cbd_mf)
cbd_lf.append(kabam_obj.cbd_lf)
cbr_phytoplankton.append(kabam_obj.cbr_phytoplankton)
cbr_zoo.append(kabam_obj.cbr_zoo)
cbr_beninv.append(kabam_obj.cbr_beninv)
cbr_ff.append(kabam_obj.cbr_ff)
cbr_sf.append(kabam_obj.cbr_sf)
cbr_mf.append(kabam_obj.cbr_mf)
cbr_lf.append(kabam_obj.cbr_lf)
cbf_phytoplankton.append(kabam_obj.cbf_phytoplankton)
cbf_zoo.append(kabam_obj.cbf_zoo)
cbf_beninv.append(kabam_obj.cbf_beninv)
cbf_ff.append(kabam_obj.cbf_ff)
cbf_sf.append(kabam_obj.cbf_sf)
cbf_mf.append(kabam_obj.cbf_mf)
cbf_lf.append(kabam_obj.cbf_lf)
cbaf_phytoplankton.append(kabam_obj.cbaf_phytoplankton)
cbaf_zoo.append(kabam_obj.cbaf_zoo)
cbaf_beninv.append(kabam_obj.cbaf_beninv)
cbaf_ff.append(kabam_obj.cbaf_ff)
cbaf_sf.append(kabam_obj.cbaf_sf)
cbaf_mf.append(kabam_obj.cbaf_mf)
cbaf_lf.append(kabam_obj.cbaf_lf)
cbfl_phytoplankton.append(kabam_obj.cbfl_phytoplankton)
cbfl_zoo.append(kabam_obj.cbfl_zoo)
cbfl_beninv.append(kabam_obj.cbfl_beninv)
cbfl_ff.append(kabam_obj.cbfl_ff)
cbfl_sf.append(kabam_obj.cbfl_sf)
cbfl_mf.append(kabam_obj.cbfl_mf)
cbfl_lf.append(kabam_obj.cbfl_lf)
cbafl_phytoplankton.append(kabam_obj.cbafl_phytoplankton)
cbafl_zoo.append(kabam_obj.cbafl_zoo)
cbafl_beninv.append(kabam_obj.cbafl_beninv)
cbafl_ff.append(kabam_obj.cbafl_ff)
cbafl_sf.append(kabam_obj.cbafl_sf)
cbafl_mf.append(kabam_obj.cbafl_mf)
cbafl_lf.append(kabam_obj.cbafl_lf)
bmf_zoo.append(kabam_obj.bmf_zoo)
bmf_beninv.append(kabam_obj.bmf_beninv)
bmf_ff.append(kabam_obj.bmf_ff)
bmf_sf.append(kabam_obj.bmf_sf)
cbmf_mf.append(kabam_obj.cbmf_mf)
cbmf_lf.append(kabam_obj.cbmf_lf)
cbsafl_phytoplankton.append(kabam_obj.cbsafl_phytoplankton)
cbsafl_zoo.append(kabam_obj.cbsafl_zoo)
cbsafl_beninv.append(kabam_obj.cbsafl_beninv)
cbsafl_ff.append(kabam_obj.cbsafl_ff)
cbsafl_sf.append(kabam_obj.cbsafl_sf)
cbsafl_mf.append(kabam_obj.cbsafl_mf)
cbsafl_lf.append(kabam_obj.cbsafl_lf)
if iter==0:
acute_dose_based_m_array = np.array((kabam_obj.acute_dose_based_m))
global acute_dose_based_m_array
acute_dose_based_a_array = np.array((kabam_obj.acute_dose_based_a))
global acute_dose_based_a_array
chronic_dose_based_m_array = np.array((kabam_obj.chronic_dose_based_m))
global chronic_dose_based_m_array
acute_rq_dose_m_array = np.array((kabam_obj.acute_rq_dose_m))
global acute_rq_dose_m_array
acute_rq_dose_a_array = np.array((kabam_obj.acute_rq_dose_a))
global acute_rq_dose_a_array
acute_rq_diet_a_array = np.array((kabam_obj.acute_rq_diet_a))
global acute_rq_diet_a_array
chronic_rq_dose_m_array = np.array((kabam_obj.chronic_rq_dose_m))
global chronic_rq_dose_m_array
chronic_rq_diet_m_array = np.array((kabam_obj.chronic_rq_diet_m))
global chronic_rq_diet_m_array
chronic_rq_diet_a_array = np.array((kabam_obj.chronic_rq_diet_a))
global chronic_rq_diet_a_array
else:
acute_dose_based_m_array = np.vstack((acute_dose_based_m_array,kabam_obj.acute_dose_based_m))
acute_dose_based_a_array = np.vstack((acute_dose_based_a_array,kabam_obj.acute_dose_based_a))
chronic_dose_based_m_array = np.vstack((chronic_dose_based_m_array,kabam_obj.chronic_dose_based_m))
acute_rq_dose_m_array = np.vstack((acute_rq_dose_m_array,kabam_obj.acute_rq_dose_m))
acute_rq_dose_a_array = np.vstack((acute_rq_dose_a_array,kabam_obj.acute_rq_dose_a))
acute_rq_diet_a_array = np.vstack((acute_rq_diet_a_array,kabam_obj.acute_rq_diet_a))
chronic_rq_dose_m_array = np.vstack((chronic_rq_dose_m_array,kabam_obj.chronic_rq_dose_m))
chronic_rq_diet_m_array = np.vstack((chronic_rq_diet_m_array,kabam_obj.chronic_rq_diet_m))
chronic_rq_diet_a_array = np.vstack((chronic_rq_diet_a_array,kabam_obj.chronic_rq_diet_a))
batch_header = """
<div class="out_">
<br><H3>Batch Calculation of Iteration %s:</H3>
</div>
"""%(iter)
kabam_obj.loop_indx = str(iter)
jid_all.append(kabam_obj.jid)
kabam_obj_all.append(kabam_obj)
if iter == 0:
jid_batch.append(kabam_obj.jid)
html = batch_header + kabam_tables.table_all(kabam_obj)
return html
def post(self):
form = cgi.FieldStorage()
chemical_name = form.getvalue('name')
l_kow = float(form.getvalue('lkow'))
k_oc = float(form.getvalue('Koc'))
c_wdp_2 = float(form.getvalue('beec'))
c_wdp = float(form.getvalue('beec')) / 1000000
water_column_EEC = float(form.getvalue('weec'))
c_wto = float(water_column_EEC) / 1000000
mineau_scaling_factor = float(form.getvalue('sf'))
x_poc = float(form.getvalue('cpoc'))
x_doc = float(form.getvalue('cdoc'))
c_ox = float(form.getvalue('cox'))
w_t = float(form.getvalue('wt'))
c_ss = float(form.getvalue('css'))
oc = float(form.getvalue('oc'))/100
k_ow = 10**(float(l_kow))
Species_of_the_tested_bird = form.getvalue('Species_of_the_tested_bird')
bw_quail = form.getvalue('bw_quail')
bw_duck = form.getvalue('bw_duck')
bwb_other = form.getvalue('bwb_other')
avian_ld50 = float(form.getvalue('ald50'))
avian_lc50 = float(form.getvalue('alc50'))
avian_noaec = float(form.getvalue('aNOAEC'))
m_species = form.getvalue('m_species')
bw_rat=form.getvalue('bw_rat')
bwm_other=form.getvalue('bwm_other')
# print 'weight=', body_weight_of_the_tested_mamm_other
mammalian_ld50 = float(form.getvalue('mld50'))
mammalian_lc50 = float(form.getvalue('mlc50'))
mammalian_chronic_endpoint = float(form.getvalue('m_chronic'))
# body_weight_of_the_assessed_mamm = float(form.getvalue('bw_assess_m'))
#diet_for_large_fish = form.getvalue('Diet_lfish')
lf_p_sediment = float(form.getvalue('lfish_p_sediment'))/100
lf_p_phytoplankton = float(form.getvalue('lfish_p_phyto'))/100
lf_p_zooplankton = float(form.getvalue('lfish_p_zoo'))/100
lf_p_benthic_invertebrates = float(form.getvalue('lfish_p_beninv'))/100
lf_p_filter_feeders = float(form.getvalue('lfish_p_ff'))/100
lf_p_small_fish = float(form.getvalue('lfish_p_sfish'))/100
lf_p_medium_fish = float(form.getvalue('lfish_p_mfish'))/100
#diet_for_medium_fish = form.getvalue('Diet_mfish')
mf_p_sediment = float(form.getvalue('mfish_p_sediment'))
#print type(mf_p_sediment)
mf_p_sediment = float(mf_p_sediment)
mf_p_phytoplankton = float(form.getvalue('mfish_p_phyto'))
mf_p_zooplankton = float(form.getvalue('mfish_p_zoo'))
mf_p_benthic_invertebrates = float(form.getvalue('mfish_p_beninv'))/100
mf_p_filter_feeders = float(form.getvalue('mfish_p_ff'))
mf_p_small_fish = float(form.getvalue('mfish_p_sfish'))/100
#diet_for_small_fish = form.getvalue('Diet_sfish')
sf_p_sediment = float(form.getvalue('sfish_p_sediment'))
sf_p_phytoplankton = float(form.getvalue('sfish_p_phyto'))
sf_p_zooplankton = float(form.getvalue('sfish_p_zoo'))/100
sf_p_benthic_invertebrates = float(form.getvalue('sfish_p_beninv'))/100
sf_p_filter_feeders = float(form.getvalue('sfish_p_ff'))
#diet_for_filter_feeder = form.getvalue('Diet_ff')
ff_p_sediment = float(form.getvalue('ff_p_sediment'))/100
ff_p_phytoplankton = float(form.getvalue('ff_p_phyto'))/100
ff_p_zooplankton = float(form.getvalue('ff_p_zoo'))/100
ff_p_benthic_invertebrates = float(form.getvalue('ff_p_beninv'))
#diet_for_invertebrates = form.getvalue('Diet_invert')
beninv_p_sediment = float(form.getvalue('beninv_p_sediment'))/100
beninv_p_phytoplankton = float(form.getvalue('beninv_p_phyto'))/100
beninv_p_zooplankton = float(form.getvalue('beninv_p_zoo'))/100
#diet_for_zooplankton = form.getvalue('Diet_zoo')
zoo_p_sediment = float(form.getvalue('zoo_p_sediment'))
zoo_p_phyto = float(form.getvalue('zoo_p_phyto'))/100
#characteristics_sediment = form.getvalue('char_s')
s_lipid = float(form.getvalue('s_lipid'))/100
s_NLOM = float(form.getvalue('s_NLOM'))/100
s_water = float(form.getvalue('s_water'))/100
s_respire = form.getvalue('s_respire')
#characteristics_phytoplankton = form.getvalue('char_phyto')
v_lb_phytoplankton = float(form.getvalue('phyto_lipid'))/100
v_nb_phytoplankton = float(form.getvalue('phyto_NLOM'))/100
v_wb_phytoplankton = float(form.getvalue('phyto_water'))/100
phyto_respire = form.getvalue('phyto_respire')
#characteristics_zooplankton = form.getvalue('char_zoo')
wb_zoo = float(form.getvalue('zoo_ww'))
v_lb_zoo = float(form.getvalue('zoo_lipid'))/100
v_nb_zoo = float(form.getvalue('zoo_NLOM'))/100
v_wb_zoo = float(form.getvalue('zoo_water'))/100
zoo_respire = form.getvalue('zoo_respire')
#characteristics_benthic_invertebrates = form.getvalue('char_beninv')
wb_beninv = float(form.getvalue('beninv_ww'))
v_lb_beninv = float(form.getvalue('beninv_lipid'))/100
v_nb_beninv = float(form.getvalue('beninv_NLOM'))/100
v_wb_beninv = float(form.getvalue('beninv_water'))/100
beninv_respire = form.getvalue('beninv_respire')
#characteristics_ff = form.getvalue('char_ff')
wb_ff = float(form.getvalue('ff_ww'))
v_lb_ff = float(form.getvalue('ff_lipid'))/100
v_nb_ff = float(form.getvalue('ff_NLOM'))/100
v_wb_ff = float(form.getvalue('ff_water'))/100
ff_respire = form.getvalue('ff_respire')
#characteristics_smfish = form.getvalue('char_sfish')
wb_sf = float(form.getvalue('sfish_ww'))
v_lb_sf = float(form.getvalue('sfish_lipid'))/100
v_nb_sf = float(form.getvalue('sfish_NLOM'))/100
v_wb_sf = float(form.getvalue('sfish_water'))/100
sfish_respire = form.getvalue('sfish_respire')
#characteristics_medfish = form.getvalue('char_mfish')
wb_mf = float(form.getvalue('mfish_ww'))
v_lb_mf = float(form.getvalue('mfish_lipid'))/100
v_nb_mf = float(form.getvalue('mfish_NLOM'))/100
v_wb_mf = float(form.getvalue('mfish_water'))/100
mfish_respire = form.getvalue('mfish_respire')
#characteristics_larfish = form.getvalue('char_lfish')
wb_lf = float(form.getvalue('lfish_ww'))
v_lb_lf = float(form.getvalue('lfish_lipid'))/100
v_nb_lf = float(form.getvalue('lfish_NLOM'))/100
v_wb_lf = float(form.getvalue('lfish_water'))/100
lfish_respire = form.getvalue('lfish_respire')
rate_constants = form.getvalue('rate_c')
# phytoplankton growth rate constant
kg_phytoplankton = 0.1
# phytoplankton diet uptake rate constant
kd_phytoplankton = 0
#phytoplankton fecal elimination rate constant
ke_phytoplankton = 0
# fraction of respiratory ventilation involving overlying water
mo_phytoplankton = 1
# fraction of respiratory ventilation involving pore water
mp_phytoplankton = 0
# rate constant for pesticide metabolic transformation
km_phytoplankton = 0
# rate constant for pesticide metabolic transformation
km_zoo = 0
# k_bw_phytoplankton = 0
# k_bw_zoo = 0
# k_bw_beninv = 0
# k_bw_ff = 0
# k_bw_sf = 0
# k_bw_mf = 0
# k_bw_lf = 0
# cb_phytoplankton_v = 0
# cb_zoo_v = 0
# cb_beninv_v = 0
# cb_ff_v = 0
# cb_sf_v = 0
# cb_mf_v = 0
# cb_lf_v = 0
k1_phytoplankton = float(form.getvalue('phyto_k1'))
k2_phytoplankton = float(form.getvalue('phyto_k2'))
kd_phytoplankton = float(form.getvalue('phyto_kd'))
ke_phytoplankton = float(form.getvalue('phyto_ke'))
km_phytoplankton = float(form.getvalue('phyto_km'))
k1_zoo = float(form.getvalue('zoo_k1'))
k2_zoo = float(form.getvalue('zoo_k2'))
kd_zoo = float(form.getvalue('zoo_kd'))
ke_zoo = float(form.getvalue('zoo_ke'))
km_zoo = float(form.getvalue('zoo_km'))
k1_beninv = float(form.getvalue('beninv_k1'))
k2_beninv = float(form.getvalue('beninv_k2'))
kd_beninv = float(form.getvalue('beninv_kd'))
ke_beninv = float(form.getvalue('beninv_ke'))
km_beninv = float(form.getvalue('beninv_km'))
k1_ff = float(form.getvalue('ff_k1'))
k2_ff = float(form.getvalue('ff_k2'))
kd_ff = float(form.getvalue('ff_kd'))
ke_ff = float(form.getvalue('ff_ke'))
km_ff = float(form.getvalue('ff_km'))
k1_sf = float(form.getvalue('sfish_k1'))
k2_sf = float(form.getvalue('sfish_k2'))
kd_sf = float(form.getvalue('sfish_kd'))
ke_sf = float(form.getvalue('sfish_ke'))
km_sf = float(form.getvalue('sfish_km'))
k1_mf = float(form.getvalue('mfish_k1'))
k2_mf = float(form.getvalue('mfish_k2'))
kd_mf = float(form.getvalue('mfish_kd'))
ke_mf = float(form.getvalue('mfish_ke'))
km_mf = float(form.getvalue('mfish_km'))
k1_lf = float(form.getvalue('lfish_k1'))
k2_lf = float(form.getvalue('lfish_k2'))
kd_lf = float(form.getvalue('lfish_kd'))
ke_lf = float(form.getvalue('lfish_ke'))
km_lf = float(form.getvalue('lfish_km'))
# else: # calculate values for rate constants
# k_bw_phytoplankton = kabam_model.k_bw_phytoplankton_f(v_lb_phytoplankton, v_nb_phytoplankton, k_ow, v_wb_phytoplankton)
# k1_phytoplankton = k1_phytoplankton_f(k_ow)
# k2_phytoplankton = k2_phytoplankton_f(k_ow, k1_phytoplankton, k_bw_phytoplankton)
# k_bw_zoo = k_bw_zoo_f(v_lb_zoo, k_ow, v_nb_zoo, v_wb_zoo)
# k1_zoo = k1_zoo_f(k_ow, wb_zoo, c_ox)
# k2_zoo = k2_zoo_f(k_bw_zoo, k1_zoo)
# kd_zoo = kd_zoo_f(k_ow, wb_zoo, w_t)
# ke_zoo = ke_zoo_f(k_ow, wb_zoo, v_lb_zoo, v_nb_zoo, zoo_p_sediment, s_lipid, s_NLOM, zoo_p_phyto, v_lb_phytoplankton, v_nb_phytoplankton, s_water, v_wb_phytoplankton, w_t, v_wb_zoo)
# k_bw_beninv = k_bw_beninv_f(v_lb_beninv, k_ow, v_nb_beninv, v_wb_beninv)
# k1_beninv = k1_beninv_f(k_ow, wb_beninv, c_ox)
# k2_beninv = k2_beninv_f(k1_beninv, k_bw_beninv)
# kd_beninv = kd_beninv_f(k_ow, wb_beninv, w_t)
# ke_beninv = ke_beninv_f(k_ow, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_beninv, w_t, v_lb_beninv, v_nb_beninv, v_wb_beninv)
# k_bw_ff = k_bw_ff_f(v_lb_ff, k_ow, v_nb_ff, v_wb_ff)
# k1_ff = k1_ff_f(k_ow, wb_ff, c_ox)
# k2_ff = k2_ff_f(k1_ff, k_bw_ff)
# kd_ff = kd_ff_f(k_ow, wb_ff, w_t, c_ss, c_ox)
# ke_ff = ke_ff_f(k_ow, ff_p_sediment, v_lb_ff, v_nb_ff, v_wb_ff, ff_p_phytoplankton, c_ss, c_ox, s_lipid, v_lb_phytoplankton, ff_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_ff, w_t)
# k_bw_sf = k_bw_sf_f(v_lb_sf, k_ow, v_nb_sf, v_wb_sf)
# k1_sf = k1_sf_f(k_ow, wb_sf, c_ox)
# k2_sf = k2_sf_f(k1_sf, k_bw_sf)
# kd_sf = kd_sf_f(k_ow, wb_sf, w_t, c_ss, c_ox)
# ke_sf = ke_sf_f(k_ow, v_lb_sf, v_nb_sf, v_wb_sf, c_ox, ff_p_sediment, s_lipid, ff_p_phytoplankton, ff_p_zooplankton, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, c_ss, wb_ff, wb_sf, w_t, v_nb_beninv, v_nb_ff, sf_p_sediment, sf_p_phytoplankton, v_lb_phytoplankton, sf_p_benthic_invertebrates, v_lb_beninv, sf_p_zooplankton, v_lb_zoo, v_wb_beninv, v_wb_ff, sf_p_filter_feeders, v_lb_ff)
# k_bw_mf = k_bw_mf_f(v_lb_mf, k_ow, v_nb_mf, v_wb_mf)
# k1_mf = k1_mf_f(k_ow, wb_mf, c_ox)
# k2_mf = k2_mf_f(k1_mf, k_bw_mf)
# kd_mf = kd_mf_f(k_ow, wb_mf, w_t, c_ss, c_ox)
# ke_mf = ke_mf_f(k_ow, v_lb_mf, v_nb_mf, v_wb_mf, wb_mf, w_t, s_lipid, v_lb_phytoplankton, v_lb_beninv, v_lb_zoo, v_lb_ff, v_lb_sf, s_NLOM, v_nb_phytoplankton, v_nb_beninv, v_nb_zoo, v_nb_ff, v_nb_sf, mf_p_sediment, s_water, mf_p_phytoplankton, v_wb_phytoplankton, mf_p_benthic_invertebrates, v_wb_beninv, mf_p_zooplankton, v_wb_zoo, mf_p_filter_feeders, v_wb_ff, mf_p_small_fish, v_wb_sf)
# k_bw_lf = k_bw_lf_f(v_lb_lf, k_ow, v_nb_lf, v_wb_lf)
# k1_lf = k1_lf_f(k_ow, wb_lf, c_ox)
# k2_lf = k2_lf_f(k1_lf, k_bw_lf)
# kd_lf = kd_lf_f(k_ow, wb_lf, w_t, c_ss, c_ox)
# ke_lf = ke_lf_f(k_ow, v_lb_lf, v_nb_lf, v_wb_lf, wb_lf, s_lipid, lf_p_sediment, v_lb_phytoplankton, lf_p_phytoplankton, v_lb_beninv, v_lb_zoo, lf_p_benthic_invertebrates, lf_p_zooplankton, lf_p_filter_feeders, v_lb_ff, v_lb_sf, lf_p_small_fish, s_water, lf_p_medium_fish, v_nb_mf, v_wb_phytoplankton, v_wb_beninv, v_wb_zoo, v_wb_ff, v_wb_sf, wb_mf, w_t, mf_p_sediment, s_NLOM, mf_p_phytoplankton, v_nb_phytoplankton, v_lb_mf, v_wb_mf, mf_p_benthic_invertebrates, v_nb_beninv, mf_p_zooplankton, v_nb_zoo, mf_p_filter_feeders, v_nb_ff, mf_p_small_fish, v_nb_sf)
# cb_phytoplankton_v = cb_phytoplankton_f(k1_phytoplankton, c_wdp, c_wto, k2_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_ow, x_doc, x_poc)
# cb_zoo_v = cb_zoo_f(k_ow, wb_zoo, w_t, k1_phytoplankton, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wdp, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, oc, x_poc, x_doc, v_lb_phytoplankton, v_nb_phytoplankton, v_wb_phytoplankton, k_bw_phytoplankton, zoo_p_phyto, zoo_p_sediment)
# cb_beninv_v = cb_beninv_f(x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv)
# cb_ff_v = cb_ff_f(k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, w_t, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates)
# cb_sf_v = cb_sf_f(wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_mf_v = cb_mf_f(k1_mf, k2_mf, kd_mf, ke_mf, wb_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_lf_v = cb_lf_f(kd_lf, k2_lf, ke_lf, k1_lf, wb_lf, wb_mf, lf_p_sediment, lf_p_phytoplankton, lf_p_zooplankton, lf_p_benthic_invertebrates, k1_mf, k2_mf, kd_mf, ke_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, lf_p_filter_feeders, lf_p_small_fish, lf_p_medium_fish, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# k_bw_phytoplankton = k_bw_phytoplankton_f(v_lb_phytoplankton, v_nb_phytoplankton, k_ow, v_wb_phytoplankton)
# k1_phytoplankton = k1_phytoplankton_f(k_ow)
# k2_phytoplankton = k2_phytoplankton_f(k_ow, k1_phytoplankton, k_bw_phytoplankton)
# k_bw_zoo = k_bw_zoo_f(v_lb_zoo, k_ow, v_nb_zoo, v_wb_zoo)
# k1_zoo = k1_zoo_f(k_ow, wb_zoo, c_ox)
# k2_zoo = k2_zoo_f(k_bw_zoo, k1_zoo)
# kd_zoo = kd_zoo_f(k_ow, wb_zoo, w_t)
# ke_zoo = ke_zoo_f(k_ow, wb_zoo, v_lb_zoo, v_nb_zoo, zoo_p_sediment, s_lipid, s_NLOM, zoo_p_phyto, v_lb_phytoplankton, v_nb_phytoplankton, s_water, v_wb_phytoplankton, w_t, v_wb_zoo)
# k_bw_beninv = k_bw_beninv_f(v_lb_beninv, k_ow, v_nb_beninv, v_wb_beninv)
# k1_beninv = k1_beninv_f(k_ow, wb_beninv, c_ox)
# k2_beninv = k2_beninv_f(k1_beninv, k_bw_beninv)
# kd_beninv = kd_beninv_f(k_ow, wb_beninv, w_t)
# ke_beninv = ke_beninv_f(k_ow, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_beninv, w_t, v_lb_beninv, v_nb_beninv, v_wb_beninv)
# k_bw_ff = k_bw_ff_f(v_lb_ff, k_ow, v_nb_ff, v_wb_ff)
# k1_ff = k1_ff_f(k_ow, wb_ff, c_ox)
# k2_ff = k2_ff_f(k1_ff, k_bw_ff)
# kd_ff = kd_ff_f(k_ow, wb_ff, w_t, c_ss, c_ox)
# ke_ff = ke_ff_f(k_ow, ff_p_sediment, v_lb_ff, v_nb_ff, v_wb_ff, ff_p_phytoplankton, c_ss, c_ox, s_lipid, v_lb_phytoplankton, ff_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, wb_ff, w_t)
# k_bw_sf = k_bw_sf_f(v_lb_sf, k_ow, v_nb_sf, v_wb_sf)
# k1_sf = k1_sf_f(k_ow, wb_sf, c_ox)
# k2_sf = k2_sf_f(k1_sf, k_bw_sf)
# kd_sf = kd_sf_f(k_ow, wb_sf, w_t, c_ss, c_ox)
# ke_sf = ke_sf_f(k_ow, v_lb_sf, v_nb_sf, v_wb_sf, c_ox, ff_p_sediment, s_lipid, ff_p_phytoplankton, ff_p_zooplankton, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, c_ss, wb_ff, wb_sf, w_t, v_nb_beninv, v_nb_ff, sf_p_sediment, sf_p_phytoplankton, v_lb_phytoplankton, sf_p_benthic_invertebrates, v_lb_beninv, sf_p_zooplankton, v_lb_zoo, v_wb_beninv, v_wb_ff, sf_p_filter_feeders, v_lb_ff)
# k_bw_mf = k_bw_mf_f(v_lb_mf, k_ow, v_nb_mf, v_wb_mf)
# k1_mf = k1_mf_f(k_ow, wb_mf, c_ox)
# k2_mf = k2_mf_f(k1_mf, k_bw_mf)
# kd_mf = kd_mf_f(k_ow, wb_mf, w_t, c_ss, c_ox)
# ke_mf = ke_mf_f(k_ow, v_lb_mf, v_nb_mf, v_wb_mf, wb_mf, w_t, s_lipid, v_lb_phytoplankton, v_lb_beninv, v_lb_zoo, v_lb_ff, v_lb_sf, s_NLOM, v_nb_phytoplankton, v_nb_beninv, v_nb_zoo, v_nb_ff, v_nb_sf, mf_p_sediment, s_water, mf_p_phytoplankton, v_wb_phytoplankton, mf_p_benthic_invertebrates, v_wb_beninv, mf_p_zooplankton, v_wb_zoo, mf_p_filter_feeders, v_wb_ff, mf_p_small_fish, v_wb_sf)
# k_bw_lf = k_bw_lf_f(v_lb_lf, k_ow, v_nb_lf, v_wb_lf)
# k1_lf = k1_lf_f(k_ow, wb_lf, c_ox)
# k2_lf = k2_lf_f(k1_lf, k_bw_lf)
# kd_lf = kd_lf_f(k_ow, wb_lf, w_t, c_ss, c_ox)
# ke_lf = ke_lf_f(k_ow, v_lb_lf, v_nb_lf, v_wb_lf, wb_lf, s_lipid, lf_p_sediment, v_lb_phytoplankton, lf_p_phytoplankton, v_lb_beninv, v_lb_zoo, lf_p_benthic_invertebrates, lf_p_zooplankton, lf_p_filter_feeders, v_lb_ff, v_lb_sf, lf_p_small_fish, s_water, lf_p_medium_fish, v_nb_mf, v_wb_phytoplankton, v_wb_beninv, v_wb_zoo, v_wb_ff, v_wb_sf, wb_mf, w_t, mf_p_sediment, s_NLOM, mf_p_phytoplankton, v_nb_phytoplankton, v_lb_mf, v_wb_mf, mf_p_benthic_invertebrates, v_nb_beninv, mf_p_zooplankton, v_nb_zoo, mf_p_filter_feeders, v_nb_ff, mf_p_small_fish, v_nb_sf)
# cb_phytoplankton_v = cb_phytoplankton_f(k1_phytoplankton, c_wdp, c_wto, k2_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_ow, x_doc, x_poc)
# cb_zoo_v = cb_zoo_f(k_ow, wb_zoo, w_t, k1_phytoplankton, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wdp, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, oc, x_poc, x_doc, v_lb_phytoplankton, v_nb_phytoplankton, v_wb_phytoplankton, k_bw_phytoplankton, zoo_p_phyto, zoo_p_sediment)
# cb_beninv_v = cb_beninv_f(x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv)
# cb_ff_v = cb_ff_f(k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, w_t, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates)
# cb_sf_v = cb_sf_f(wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_mf_v = cb_mf_f(k1_mf, k2_mf, kd_mf, ke_mf, wb_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
# cb_lf_v = cb_lf_f(kd_lf, k2_lf, ke_lf, k1_lf, wb_lf, wb_mf, lf_p_sediment, lf_p_phytoplankton, lf_p_zooplankton, lf_p_benthic_invertebrates, k1_mf, k2_mf, kd_mf, ke_mf, mf_p_sediment, mf_p_phytoplankton, mf_p_zooplankton, lf_p_filter_feeders, lf_p_small_fish, lf_p_medium_fish, mf_p_benthic_invertebrates, mf_p_filter_feeders, mf_p_small_fish, wb_sf, k1_sf, k2_sf, kd_sf, ke_sf, sf_p_benthic_invertebrates, ff_p_phytoplankton, ff_p_sediment, ff_p_zooplankton, k1_ff, k2_ff, kd_ff, ke_ff, wb_ff, sf_p_phytoplankton, sf_p_sediment, sf_p_zooplankton, x_poc, x_doc, k_ow, k1_beninv, k2_beninv, kd_beninv, ke_beninv, wb_beninv, c_ox, w_t, k1_phytoplankton, c_wdp, k1_zoo, k2_zoo, kd_zoo, ke_zoo, c_wto, k2_phytoplankton, kd_phytoplankton, ke_phytoplankton, kg_phytoplankton, km_phytoplankton, mo_phytoplankton, mp_phytoplankton, k_oc, v_wb_beninv, oc, k_bw_phytoplankton, zoo_p_sediment, zoo_p_phyto, wb_zoo, beninv_p_sediment, s_lipid, beninv_p_phytoplankton, v_lb_phytoplankton, beninv_p_zooplankton, v_lb_zoo, s_NLOM, v_nb_phytoplankton, v_nb_zoo, s_water, v_wb_phytoplankton, v_wb_zoo, v_lb_beninv, v_nb_beninv, ff_p_benthic_invertebrates, sf_p_filter_feeders)
kabam_obj = kabam_model.kabam(
True,True,'single',chemical_name,l_kow,k_oc,c_wdp,water_column_EEC,c_wto,mineau_scaling_factor,x_poc,x_doc,c_ox,w_t,c_ss,oc,k_ow,
Species_of_the_tested_bird,bw_quail,bw_duck,bwb_other,avian_ld50,avian_lc50,avian_noaec,m_species,bw_rat,bwm_other,mammalian_ld50,mammalian_lc50,mammalian_chronic_endpoint,
lf_p_sediment,lf_p_phytoplankton,lf_p_zooplankton,lf_p_benthic_invertebrates,lf_p_filter_feeders,lf_p_small_fish,lf_p_medium_fish,
mf_p_sediment,mf_p_phytoplankton,mf_p_zooplankton,mf_p_benthic_invertebrates,mf_p_filter_feeders,mf_p_small_fish,
sf_p_sediment,sf_p_phytoplankton,sf_p_zooplankton,sf_p_benthic_invertebrates,sf_p_filter_feeders,
ff_p_sediment,ff_p_phytoplankton,ff_p_zooplankton,ff_p_benthic_invertebrates,
beninv_p_sediment,beninv_p_phytoplankton,beninv_p_zooplankton,
zoo_p_sediment,zoo_p_phyto,
s_lipid,s_NLOM,s_water,
v_lb_phytoplankton,v_nb_phytoplankton,v_wb_phytoplankton,wb_zoo,v_lb_zoo,v_nb_zoo,v_wb_zoo,wb_beninv,v_lb_beninv,v_nb_beninv,v_wb_beninv,wb_ff,v_lb_ff,v_nb_ff,v_wb_ff,wb_sf,v_lb_sf,v_nb_sf,v_wb_sf,wb_mf,v_lb_mf,v_nb_mf,v_wb_mf,wb_lf,v_lb_lf,v_nb_lf,v_wb_lf,
kg_phytoplankton,kd_phytoplankton,ke_phytoplankton,mo_phytoplankton,mp_phytoplankton,km_phytoplankton,km_zoo,
k1_phytoplankton,k2_phytoplankton,
k1_zoo,k2_zoo,kd_zoo,ke_zoo,k1_beninv,k2_beninv,kd_beninv,ke_beninv,km_beninv,
k1_ff,k2_ff,kd_ff,ke_ff,km_ff,k1_sf,k2_sf,kd_sf,ke_sf,km_sf,k1_mf,k2_mf,kd_mf,ke_mf,km_mf,k1_lf,k2_lf,kd_lf,ke_lf,km_lf,
rate_constants,s_respire,phyto_respire,zoo_respire,beninv_respire,ff_respire,sfish_respire,mfish_respire,lfish_respire, None
)
# cb_phytoplankton_v,cb_zoo_v,cb_beninv_v,cb_ff_v,cb_sf_v,cb_mf_v,cb_lf_v ***Removed from kabam_obj above***
templatepath = os.path.dirname(__file__) + '/../templates/'
ChkCookie = self.request.cookies.get("ubercookie")
html = uber_lib.SkinChk(ChkCookie, "Kabam Output")
html = html + template.render(templatepath + '02uberintroblock_wmodellinks.html', {'model':'kabam','page':'output'})
html = html + template.render (templatepath + '03ubertext_links_left.html', {})
html = html + template.render(templatepath + '04uberoutput_start.html', {
'model':'kabam',
'model_attributes':'Kabam Output'})
html = html + kabam_tables.timestamp(kabam_obj,"")
html = html + kabam_tables.table_all(kabam_obj)
html = html + kabam_tables.bar_f(kabam_obj)
html = html + template.render(templatepath + 'kabam_output_jqplot.html', {})
html = html + template.render(templatepath + 'export.html', {})
html = html + template.render(templatepath + '04uberoutput_end.html', {})
html = html + template.render(templatepath + '06uberfooter.html', {'links': ''})
rest_funcs.save_dic(html, kabam_obj.__dict__, "kabam", "single")
self.response.out.write(html)
