def test_sequential_model_saving():
model = Sequential()
model.add(Dense(2, input_shape=(3,)))
model.add(RepeatVector(3))
model.add(TimeDistributed(Dense(3)))
model.compile(loss=losses.MSE,
optimizer=optimizers.RMSprop(lr=0.0001),
metrics=[metrics.categorical_accuracy],
sample_weight_mode='temporal')
x = np.random.random((1, 3))
y = np.random.random((1, 3, 3))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
new_model = load_model(fname)
os.remove(fname)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
# test that new updates are the same with both models
x = np.random.random((1, 3))
y = np.random.random((1, 3, 3))
model.train_on_batch(x, y)
new_model.train_on_batch(x, y)
out = model.predict(x)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_saving_multiple_metrics_outputs():
inputs = Input(shape=(5,))
x = Dense(5)(inputs)
output1 = Dense(1, name='output1')(x)
output2 = Dense(1, name='output2')(x)
model = Model(inputs=inputs, outputs=[output1, output2])
metrics = {'output1': ['mse', 'binary_accuracy'],
'output2': ['mse', 'binary_accuracy']
}
loss = {'output1': 'mse', 'output2': 'mse'}
model.compile(loss=loss, optimizer='sgd', metrics=metrics)
# assure that model is working
x = np.array([[1, 1, 1, 1, 1]])
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_model_saving_to_pre_created_h5py_file():
inputs = Input(shape=(3,))
x = Dense(2)(inputs)
outputs = Dense(3)(x)
model = Model(inputs, outputs)
model.compile(loss=losses.MSE,
optimizer=optimizers.Adam(),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
with h5py.File(fname, mode='r+') as h5file:
save_model(model, h5file)
loaded_model = load_model(h5file)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
# test non-default options in h5
with h5py.File('does not matter', driver='core',
backing_store=False) as h5file:
save_model(model, h5file)
loaded_model = load_model(h5file)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_sequential_model_saving_2():
# test with custom optimizer, loss
custom_opt = optimizers.rmsprop
custom_loss = losses.mse
model = Sequential()
model.add(Dense(2, input_shape=(3,)))
model.add(Dense(3))
model.compile(loss=custom_loss, optimizer=custom_opt(), metrics=['acc'])
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
out = model.predict(x)
load_kwargs = {'custom_objects': {'custom_opt': custom_opt,
'custom_loss': custom_loss}}
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
new_model_disk = load_model(fname, **load_kwargs)
os.remove(fname)
with tf_file_io_proxy('keras.engine.saving.tf_file_io') as file_io_proxy:
gcs_filepath = file_io_proxy.get_filepath(filename=fname)
save_model(model, gcs_filepath)
file_io_proxy.assert_exists(gcs_filepath)
new_model_gcs = load_model(gcs_filepath, **load_kwargs)
file_io_proxy.delete_file(gcs_filepath) # cleanup
for new_model in [new_model_disk, new_model_gcs]:
new_out = new_model.predict(x)
assert_allclose(out, new_out, atol=1e-05)
def test_sequential_model_saving():
model = Sequential()
model.add(Dense(2, input_dim=3))
model.add(Dense(3))
model.compile(loss='mse', optimizer='rmsprop', metrics=['acc'])
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
out = model.predict(x)
fname = 'tmp_' + str(np.random.randint(10000)) + '.h5'
save_model(model, fname)
new_model = load_model(fname)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
# test that new updates are the same with both models
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
new_model.train_on_batch(x, y)
out = model.predict(x)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
# test load_weights on model file
model.load_weights(fname)
os.remove(fname)
def test_functional_model_saving():
inputs = Input(shape=(3,))
x = Dense(2)(inputs)
outputs = Dense(3)(x)
model = Model(inputs, outputs)
model.compile(loss=losses.MSE,
optimizer=optimizers.Adam(),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
new_model_disk = load_model(fname)
os.remove(fname)
with tf_file_io_proxy('keras.engine.saving.tf_file_io') as file_io_proxy:
gcs_filepath = file_io_proxy.get_filepath(filename=fname)
save_model(model, gcs_filepath)
file_io_proxy.assert_exists(gcs_filepath)
new_model_gcs = load_model(gcs_filepath)
file_io_proxy.delete_file(gcs_filepath) # cleanup
for new_model in [new_model_disk, new_model_gcs]:
new_out = new_model.predict(x)
assert_allclose(out, new_out, atol=1e-05)
def test_sequential_model_saving_2():
# test with funkier config
model = Sequential()
model.add(Dense(2, input_dim=3))
model.add(RepeatVector(3))
model.add(TimeDistributed(Dense(3)))
model.compile(loss=objectives.MSE,
optimizer=optimizers.RMSprop(lr=0.0001),
metrics=[metrics.categorical_accuracy],
sample_weight_mode='temporal')
x = np.random.random((1, 3))
y = np.random.random((1, 3, 3))
model.train_on_batch(x, y)
out = model.predict(x)
fname = 'tmp_' + str(np.random.randint(10000)) + '.h5'
save_model(model, fname)
new_model = load_model(fname)
os.remove(fname)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
# test that new updates are the same with both models
x = np.random.random((1, 3))
y = np.random.random((1, 3, 3))
model.train_on_batch(x, y)
new_model.train_on_batch(x, y)
out = model.predict(x)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_saving_without_compilation():
model = Sequential()
model.add(Dense(2, input_dim=3))
model.add(Dense(3))
model.compile(loss='mse', optimizer='sgd', metrics=['acc'])
fname = 'tmp_' + str(np.random.randint(10000)) + '.h5'
save_model(model, fname)
model = load_model(fname)
def test_model_save_load_binary_in_memory():
model, x = _get_sample_model_and_input()
out = model.predict(x)
stream = io.BytesIO()
save_model(model, stream)
stream.seek(0)
loaded_model = load_model(stream)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_saving_without_compilation():
model = Sequential()
model.add(Dense(2, input_dim=3))
model.add(Dense(3))
model.compile(loss='mse', optimizer='sgd', metrics=['acc'])
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
def test_saving_without_compilation():
"""Test saving model without compiling.
"""
model = Sequential()
model.add(Dense(2, input_shape=(3,)))
model.add(Dense(3))
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
def test_saving_right_after_compilation():
model = Sequential()
model.add(Dense(2, input_shape=(3,)))
model.add(Dense(3))
model.compile(loss='mse', optimizer='sgd', metrics=['acc'])
model.model._make_train_function()
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
def test_saving_right_after_compilation():
model = Sequential()
model.add(Dense(2, input_dim=3))
model.add(Dense(3))
model.compile(loss='mse', optimizer='sgd', metrics=['acc'])
model.model._make_train_function()
fname = 'tmp_' + str(np.random.randint(10000)) + '.h5'
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
def test_saving_unused_layers_is_ok():
a = Input(shape=(256, 512, 6))
b = Input(shape=(256, 512, 1))
c = Lambda(lambda x: x[:, :, :, :1])(a)
model = Model(inputs=[a, b], outputs=c)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
load_model(fname)
os.remove(fname)
def test_saving_constant_initializer_with_numpy():
"""Test saving and loading model of constant initializer with numpy ndarray as input.
"""
model = Sequential()
model.add(Dense(2, input_shape=(3,), kernel_initializer=Constant(np.ones((3, 2)))))
model.add(Dense(3))
model.compile(loss='mse', optimizer='sgd', metrics=['acc'])
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
def test_model_loading_from_binary_stream():
model, x = _get_sample_model_and_input()
out = model.predict(x)
with temp_filename('h5') as fname:
# save the model the usual way
with h5py.File(fname, mode='w') as h5file:
save_model(model, h5file)
# Load the data binary, and make sure the model is intact.
with open(fname, 'rb') as raw_file:
loaded_model = load_model(raw_file)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_model_saving_to_binary_stream():
model, x = _get_sample_model_and_input()
out = model.predict(x)
with temp_filename('h5') as fname:
# save directly to binary file
with open(fname, 'wb') as raw_file:
save_model(model, raw_file)
# Load the data the usual way, and make sure the model is intact.
with h5py.File(fname, mode='r') as h5file:
loaded_model = load_model(h5file)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def save_model_to_hdf5_group(model, f):
# Use Keras save_model to save the full model (including optimizer
# state) to a file.
# Then we can embed the contents of that HDF5 file inside ours.
tempfd, tempfname = tempfile.mkstemp(prefix='tmp-betago')
try:
os.close(tempfd)
save_model(model, tempfname)
serialized_model = h5py.File(tempfname, 'r')
root_item = serialized_model.get('/')
serialized_model.copy(root_item, f, 'kerasmodel')
serialized_model.close()
finally:
os.unlink(tempfname)
def test_saving_lambda_numpy_array_arguments():
mean = np.random.random((4, 2, 3))
std = np.abs(np.random.random((4, 2, 3))) + 1e-5
inputs = Input(shape=(4, 2, 3))
outputs = Lambda(lambda image, mu, std: (image - mu) / std,
arguments={'mu': mean, 'std': std})(inputs)
model = Model(inputs, outputs)
model.compile(loss='mse', optimizer='sgd', metrics=['acc'])
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
assert_allclose(mean, model.layers[1].arguments['mu'])
assert_allclose(std, model.layers[1].arguments['std'])
def test_saving_lambda_numpy_array_arguments():
mean = np.random.random((4, 2, 3))
std = np.abs(np.random.random((4, 2, 3))) + 1e-5
inputs = Input(shape=(4, 2, 3))
outputs = Lambda(lambda image, mu, std: (image - mu) / std,
arguments={'mu': mean, 'std': std})(inputs)
model = Model(inputs, outputs)
model.compile(loss='mse', optimizer='sgd', metrics=['acc'])
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
assert_allclose(mean, model.layers[1].arguments['mu'])
assert_allclose(std, model.layers[1].arguments['std'])
def test_saving_model_with_long_weights_names():
x = Input(shape=(2, ), name='nested_model_input')
f = x
for i in range(4):
f = Dense(2, name='nested_model_dense_%d' % (i, ))(f)
# This layer name will make the `weights_name`
# HDF5 attribute blow out of proportion.
f = Dense(2, name='nested_model_output' + ('x' * (2**15)))(f)
nested_model = Model(inputs=[x], outputs=[f], name='nested_model')
x = Input(shape=(2, ), name='outer_model_input')
f = nested_model(x)
f = Dense(2, name='outer_model_output')(f)
model = Model(inputs=[x], outputs=[f])
model.compile(loss='mse', optimizer='adam', metrics=['acc'])
x = np.random.random((1, 2))
y = np.random.random((1, 2))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
# Check that the HDF5 files contains chunked array
# of weight names.
with h5py.File(fname, 'r') as h5file:
attrs = [
attr for attr in h5file['model_weights']['nested_model'].attrs
if attr.startswith('weight_names')
]
n_weight_names_arrays = len(attrs)
os.remove(fname)
# The chunking of layer names array should have happened.
assert n_weight_names_arrays > 0
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_functional_model_saving():
img_rows, img_cols = 32, 32
img_channels = 3
# Parameters for the DenseNet model builder
img_dim = (img_channels, img_rows,
img_cols) if K.image_data_format() == 'channels_first' else (
img_rows, img_cols, img_channels)
depth = 40
nb_dense_block = 3
growth_rate = 3 # number of z2 maps equals growth_rate * group_size, so keep this small.
nb_filter = 16
dropout_rate = 0.0 # 0.0 for data augmentation
conv_group = 'D4' # C4 includes 90 degree rotations, D4 additionally includes reflections in x and y axis.
use_gcnn = True
# Create the model (without loading weights)
model = GDenseNet(mc_dropout=False,
padding='same',
nb_dense_block=nb_dense_block,
growth_rate=growth_rate,
nb_filter=nb_filter,
dropout_rate=dropout_rate,
weights=None,
input_shape=img_dim,
depth=depth,
use_gcnn=use_gcnn,
conv_group=conv_group)
model.compile(loss=losses.categorical_crossentropy,
optimizer=optimizers.Adam(),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 32, 32, 3))
y = np.random.randint(0, 10, 1)
y = np_utils.to_categorical(y, 10)
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def cnn_lstm_main(col='toxic', epochs=2, ver=0, mode='val'):
embedding_dims = 128
filters = 64
kernel_size = 5
lstm_output_size = 64
batch_size = 32
dropout = 0.5
print('loading data')
df_train = pd.read_csv(util.train_data)
y = df_train[col].values
if ver == 1:
X = pickle.load(open(util.tmp_padded_seq_train_ver1, 'rb'))
else:
X = pickle.load(open(util.tmp_padded_seq_train, 'rb'))
print(X.shape, y.shape)
model = Sequential()
model.add(
Embedding(util.num_words, embedding_dims, input_length=util.maxlen))
model.add(Dropout(dropout))
model.add(Conv1D(filters, kernel_size, activation='relu'))
model.add(MaxPooling1D())
model.add(LSTM(lstm_output_size))
model.add(Dense(1, activation='sigmoid'))
model.compile(loss='binary_crossentropy',
optimizer='adam',
metrics=['accuracy'])
print('trainging cnn_lstm model for %s...' % col)
if mode == 'val':
tb = TensorBoard(log_dir=util.cnn_lstm_ver0_log, histogram_freq=1)
model.fit(X_train, y_train, batch_size=batch_size, epochs=epochs, \
validation_split=0.2, verbose=2, callbacks=[tb])
else:
model, _metrics = util.get_cv_logloss(model, X, y)
print('saving model')
if ver == 1:
saving_path = util.cnn_lstm_ver1 + '_' + col
else:
saving_path = util.cnn_lstm_ver0 + '_' + col
save_model(model, saving_path)
def save(self, dir=None, file_name=None):
assert os.path.exists(dir), 'Directory does not exist'
if file_name is None:
file_name = self.name
cfg = self.to_json()
if self.is_built():
cfg['weights'] = {
'fm': os.path.join(dir, file_name + '_fm.h5'),
'rm': os.path.join(dir, file_name + '_rm.h5')
}
k_models.save_model(getattr(self._fm, '_model'), cfg['weights']['fm'])
k_models.save_model(getattr(self._rm, '_model'), cfg['weights']['rm'])
save_json(cfg, os.path.join(dir, file_name+'.json'))
def test_functional_model_saving():
model, x = _get_sample_model_and_input()
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
new_model_disk = load_model(fname)
os.remove(fname)
with tf_file_io_proxy('keras.engine.saving.tf_file_io') as file_io_proxy:
gcs_filepath = file_io_proxy.get_filepath(filename=fname)
save_model(model, gcs_filepath)
file_io_proxy.assert_exists(gcs_filepath)
new_model_gcs = load_model(gcs_filepath)
file_io_proxy.delete_file(gcs_filepath) # cleanup
for new_model in [new_model_disk, new_model_gcs]:
new_out = new_model.predict(x)
assert_allclose(out, new_out, atol=1e-05)
def test_functional_model_saving():
model, x = _get_sample_model_and_input()
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
new_model_disk = load_model(fname)
os.remove(fname)
with tf_file_io_proxy('keras.engine.saving.tf_file_io') as file_io_proxy:
gcs_filepath = file_io_proxy.get_filepath(filename=fname)
save_model(model, gcs_filepath)
file_io_proxy.assert_exists(gcs_filepath)
new_model_gcs = load_model(gcs_filepath)
file_io_proxy.delete_file(gcs_filepath) # cleanup
for new_model in [new_model_disk, new_model_gcs]:
new_out = new_model.predict(x)
assert_allclose(out, new_out, atol=1e-05)
def save_model(self,
name="trained_1",
basepath="../data/models/",
save_structure=False):
# if not name.endswith(".h5"):
# name += ".h5"
print(f"Saving model to: '{basepath}{name}'...")
if not os.path.exists(basepath):
os.makedirs(basepath)
if save_structure:
model_json = self.model.to_json()
with open(f"{basepath}{name}.json", "w") as fp:
fp.write(model_json)
save_model(self.model, f"{basepath}{name}")
print("Saving complete.")
def test_saving_model_with_long_weights_names():
x = Input(shape=(2,), name='nested_model_input')
f = x
for i in range(4):
f = Dense(2, name='nested_model_dense_%d' % (i,))(f)
f = Dense(2, name='nested_model_dense_4', trainable=False)(f)
# This layer name will make the `weights_name`
# HDF5 attribute blow out of proportion.
f = Dense(2, name='nested_model_output' + ('x' * (2**15)))(f)
nested_model = Model(inputs=[x], outputs=[f], name='nested_model')
x = Input(shape=(2,), name='outer_model_input')
f = nested_model(x)
f = Dense(2, name='outer_model_output')(f)
model = Model(inputs=[x], outputs=[f])
model.compile(loss='mse', optimizer='adam', metrics=['acc'])
x = np.random.random((1, 2))
y = np.random.random((1, 2))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
# Check that the HDF5 files contains chunked array
# of weight names.
with h5py.File(fname, 'r') as h5file:
attrs = [attr for attr in h5file['model_weights']['nested_model'].attrs
if attr.startswith('weight_names')]
n_weight_names_arrays = len(attrs)
os.remove(fname)
# The chunking of layer names array should have happened.
assert n_weight_names_arrays > 0
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def main(model_name, adv_model_names, model_type):
np.random.seed(0)
assert keras.backend.backend() == "tensorflow"
set_mnist_flags()
flags.DEFINE_bool('NUM_EPOCHS', args.epochs, 'Number of epochs')
# Get MNIST test data
X_train, Y_train, X_test, Y_test = data_mnist()
data_gen = data_gen_mnist(X_train)
x = K.placeholder(shape=(None, FLAGS.IMAGE_ROWS, FLAGS.IMAGE_COLS,
FLAGS.NUM_CHANNELS))
y = K.placeholder(shape=(FLAGS.BATCH_SIZE, FLAGS.NUM_CLASSES))
eps = args.eps
# if src_models is not None, we train on adversarial examples that come
# from multiple models
adv_models = [None] * len(adv_model_names)
for i in range(len(adv_model_names)):
adv_models[i] = load_model(adv_model_names[i])
model = model_mnist(type=model_type)
x_advs = [None] * (len(adv_models) + 1)
for i, m in enumerate(adv_models + [model]):
logits = m(x)
grad = gen_grad(x, logits, y, loss='training')
x_advs[i] = symbolic_fgs(x, grad, eps=eps)
# Train an MNIST model
tf_train(x, y, model, X_train, Y_train, data_gen, x_advs=x_advs)
# Finally print the result!
test_error = tf_test_error_rate(model, x, X_test, Y_test)
print('Test error: %.1f%%' % test_error)
save_model(model, model_name)
json_string = model.to_json()
with open(model_name + '.json', 'wr') as f:
f.write(json_string)
def train(model, model_label, training_data, batch_size=256, epochs=10):
(x_train, y_train), (x_test, y_test), mapping, nb_classes = training_data
# convert class vectors to binary class matrices
y_train = np_utils.to_categorical(y_train, nb_classes)
y_test = np_utils.to_categorical(y_test, nb_classes)
STAMP = model_label
print('Training model {}'.format(STAMP))
logs_path = './logs/{}'.format(STAMP)
bst_model_path = './checkpoints/' + STAMP + '.h5'
early_stopping = keras.callbacks.EarlyStopping(monitor='val_loss',
patience=3)
model_checkpoint = keras.callbacks.ModelCheckpoint(bst_model_path,
save_best_only=True,
save_weights_only=True,
verbose=1)
tensor_board = keras.callbacks.TensorBoard(log_dir=logs_path,
histogram_freq=0,
write_graph=True,
write_images=False)
reduce_lr = keras.callbacks.ReduceLROnPlateau(monitor='val_loss',
patience=1)
model.fit(
x_train,
y_train,
batch_size=batch_size,
epochs=epochs,
verbose=1,
shuffle=True,
validation_data=(x_test, y_test),
callbacks=[early_stopping, model_checkpoint, tensor_board, reduce_lr])
score = model.evaluate(x_test, y_test, verbose=0)
print('Test score:', score[0])
print('Test accuracy:', score[1])
# Offload model to file
model_yaml = model.to_yaml()
with open("bin/" + STAMP + ".yaml", "w") as yaml_file:
yaml_file.write(model_yaml)
save_model(model, 'bin/' + STAMP + 'model.h5')
def on_epoch_end(self, epoch, logs={}):
#y_pred = self.model.predict(self.model.validation_data[0])
# there 7578 frames in test set
model_has_validation_data = hasattr(self.model, 'validation_data')
print(model_has_validation_data)
if model_has_validation_data:
test_mean_error = predictSequence(epoch, self.model, 5000,
self.model.validation_data[0],
self.model.validation_data[1])
self.test_mean_errors.append(test_mean_error)
# Save the model at every epoch end
print("Saving trained model...")
model_prefix = 'CNN_LSTM_scratch_v3'
model_path = "../trained_models/" + model_prefix + ".h5"
save_model(
self.model, model_path, overwrite=True
) # saves weights, network topology and optimizer state (if any)
return
def main():
X_train_orig, Y_train_orig, _, _, classes = load_dataset()
# Normalise image vectors.
#X_train = preprocess_input(X_train_orig)
X_train = X_train_orig / 255
# Convert training and test labels to one hot matrices.
Y_train = convert_to_one_hot(Y_train_orig, 6).T
model = ResNet50(input_shape=(64, 64, 3), classes=len(classes))
model.compile(optimizer="adam",
loss="categorical_crossentropy",
metrics=["accuracy"])
model.fit(x=X_train, y=Y_train, batch_size=32, epochs=20)
save_model(model, "resnets_signs_model.h5")
#model.summary()
plot_model(model, to_file="sign_model.png")
SVG(model_to_dot(model).create(prog="dot", format="svg"))
def train(self, lr=1e-2, epochs=1):
remove(self.log_path)
model = self.build_model(lr)
model.summary()
X_train, X_test, y_train, y_test = self.get_data()
model.fit(x=X_train,
y=y_train,
batch_size=self.batch_size,
epochs=epochs,
verbose=1,
callbacks=self.get_callbacks(),
validation_data=(X_test, y_test),
shuffle=True,
initial_epoch=0,
steps_per_epoch=None, validation_steps=None)
save_model(model, self.last_model_path)
def train(model, training_data, callback=True, batch_size=256, epochs=10):
print("starting train funct")
(x_train, y_train), (x_test, y_test), mapping, nb_classes = training_data
# convert class vectors to binary class matrices
y_train = np_utils.to_categorical(y_train, nb_classes)
y_test = np_utils.to_categorical(y_test, nb_classes)
y_train = np.squeeze(y_train, axis=1) # make it from 3d to 2d
y_test = np.squeeze(y_test, axis=1) # make it from 3d to 2d
if callback == True:
# Callback for analysis in TensorBoard
tbCallBack = keras.callbacks.TensorBoard(
log_dir='./OverfitByClassGraph',
histogram_freq=0,
write_graph=True,
write_images=True)
print("Beginning training")
print(y_train.shape)
print(y_test.shape)
print("______________")
print(x_train.shape)
print(x_test.shape)
model.fit(x_train,
y_train,
batch_size=batch_size,
epochs=epochs,
verbose=1,
validation_data=(x_test, y_test),
callbacks=[tbCallBack] if callback else None)
score = model.evaluate(x_test, y_test, verbose=0)
print('Test score:', score[0])
print('Test accuracy:', score[1])
# Offload model to file
model_yaml = model.to_yaml()
with open("bin/overfit_byclass_model.yaml", "w") as yaml_file:
yaml_file.write(model_yaml)
save_model(model, 'bin/overfit_byclass_model.h5')
def train_best_conv_net(best_combo, n, train_labels, test_meta, test_labels,
sample_scores, out_path):
try:
print("Train Conv Net")
train_data = np.load(join(out_path, "best_train_data.npy"))
test_data = np.load(join(out_path, "best_test_data.npy"))
environ["CUDA_VISIBLE_DEVICES"] = "{0:d}".format(0)
session = K.tf.Session(
config=K.tf.ConfigProto(allow_soft_placement=False,
gpu_options=K.tf.GPUOptions(
allow_growth=True),
log_device_placement=False))
K.set_session(session)
hail_conv_net_model = hail_conv_net(**best_combo)
hail_conv_net_model.fit(train_data,
train_labels,
batch_size=best_combo["batch_size"],
epochs=best_combo["num_epochs"],
verbose=2)
print("Scoring Conv Net")
test_preds = hail_conv_net_model.predict(test_data).ravel()
test_pred_frame = test_meta.copy(deep=True)
test_pred_frame["conv_net"] = test_preds
test_pred_frame["label"] = test_labels
test_pred_frame.to_csv(join(
out_path, "predictions_conv_net_sample_{0:03d}.csv".format(n)),
index_label="Index")
sample_scores.loc[n,
"Brier Score"] = brier_score(test_labels, test_preds)
sample_scores.loc[n, "Brier Score Climo"] = brier_score(
test_labels, test_labels.mean())
sample_scores.loc[n, "Brier Skill Score"] = brier_skill_score(
test_labels, test_preds)
sample_scores.loc[n, "AUC"] = roc_auc_score(test_labels, test_preds)
save_model(hail_conv_net_model,
join(out_path, "hail_conv_net_sample_{0:03d}.h5".format(n)))
session.close()
del session
del hail_conv_net_model
return sample_scores
except Exception as e:
print(traceback.format_exc())
raise e
def train(args):
# early_stopping = EarlyStopping(monitor='val_loss', patience=100)
save_base_model = SaveBaseModel(
args.check_point + '/' +
'tencent_speech_epoch.weights.{epoch:03d}-{val_loss:.2f}.hdf5',
base_model)
# model_checkpoint = ModelCheckpoint(args.check_point + '/' + 'deep_speech2_epoch.{epoch:03d}-{val_loss:.2f}.hdf5',
# save_best_only=True, save_weights_only=True)
history = model.fit(
x=[train_inputs, train_input_length, train_y_true, train_label_length],
y=np.ones(train_y_true.shape[0]),
validation_data=([
dev_inputs, dev_input_length, dev_y_true, dev_label_length
], np.ones(dev_y_true.shape[0])),
epochs=args.nb_epoch,
batch_size=args.batch_size,
shuffle=False,
callbacks=[save_base_model])
save_model(base_model, './tencent_deep_speech.model')
def train(model, data, path=None):
simple_dataset = data
Y = simple_dataset[['bias', 'not_bias']]
X = simple_dataset.drop(columns=['bias', 'not_bias'], axis=1)
print(X.keys())
print(Y.head())
x_train, x_test, y_train, y_test = train_test_split(X, Y, test_size=0.2)
batch_size = 30
model.fit(x=x_train, y=y_train, batch_size=batch_size, epochs=50)
print(model.evaluate(x=x_test, y=y_test, batch_size=batch_size))
if path != None:
save_model(model, filepath=path)
def fit(self):
"""
:return:
object
Returns an object of class `keras.models.Sequential`.
"""
if os.path.exists(self.model_):
log.info('Fully-trained model found.')
self.model = load_model(self.model_)
return self.model
elif os.path.exists(self.ckpt_dir):
log.info('LSTM-model checkpoint found.')
self.model = load_model(self.ckpt_dir)
self.model.fit(self.X,
self.y,
batch_size=256,
epochs=20,
callbacks=[self.checkpointer, self.earlystopping])
return self.model
else:
self.model.compile(loss='categorical_crossentropy',
optimizer=self.optimizer)
log.info("Commencing model fitting. Stand by ...")
time.sleep(0.5)
# for i in range(1, 30):
# print('Iteration: ', i)
self.model.fit(self.X,
self.y,
batch_size=256,
epochs=20,
callbacks=[self.checkpointer, self.earlystopping])
log.info("LSTM-model successfully fitted.")
save_model(self.model, filepath=self.model_)
log.info("LSTM-model dumped at 'model'.")
return self.model
def cnnTest():
fd = open("train_log.txt","w")
# 모델 구성(2(input) -> CONV(ReLU) -> CONV(ReLU) -> FC(sigmoid))
model = km.Sequential()
# 입력 (None,28,28,1)
# 출력 (None,28,28,32)
model.add(kl.Conv2D(input_shape=(28, 28, 1), filters=32,
kernel_size=(3, 3), strides=1,
padding='same')) # zero-padding
model.add(kl.Activation('relu'))
# 입력 (None,28.28,32)
# 출력 (None,26,26,32)
model.add(kl.Conv2D(filters=32,
kernel_size=(3, 3), strides=1))
model.add(kl.Activation('relu'))
# 입력 (None,26,26,32)
# 출력 (None,13,13,32)
model.add(kl.MaxPooling2D(pool_size=(2,2)))
model.add(kl.Dropout(0.25))
# 출력 (None,13*13*32)
model.add(kl.Flatten())
model.add(kl.Dense(128,activation='relu'))
model.add(kl.Dropout(0.5))
model.add(kl.Dense(10,activation='softmax'))
# 학습 설정
model.compile(loss='categorical_crossentropy',
optimizer='adam', metrics=['accuracy'])
# 모델 구조 그리기
ku.plot_model(model, 'model.png')
# 학습(10회 반복, 10000개 샘플씩 배치 학습)
for epoch in range(maxEpoch):
#trLoss = model.train_on_batch(trDataList,trLabelList)
model.fit(trDataList,trLabelList,batch_size=10000,epochs=1)
score = model.evaluate(trDataList,trLabelList,verbose=0)
fd.write(("Epoch %d/%d, error rate : %f\n")%(epoch+1,maxEpoch,100-score[1]*100))
fd.close()
km.save_model(model,'best_param.h5')
def train(self):
epochs = self.max_epochs - self.epoch
# logger.info("model saved: %s.", args.checkpoint_path)
# callbacks
checkpoint_path = tempfile.mktemp()
callbacks = [
ModelCheckpoint(checkpoint_path, verbose=1, save_best_only=False),
LoggerCallback(self)
]
save_model(self.model, checkpoint_path)
# training start
num_training_batches = (len(self.training) - 1) // (self.batch_size *
self.seq_len)
num_validation_batches = (len(self.validation) -
1) // (self.batch_size * self.seq_len)
self.model.reset_states()
try:
self.model.fit_generator(
initial_epoch=self.epoch,
generator=self._batch_generator(self.training,
self.batch_size,
self.seq_len,
one_hot_labels=True),
steps_per_epoch=num_training_batches,
validation_data=self._batch_generator(self.validation,
self.batch_size,
self.seq_len,
one_hot_labels=True),
validation_steps=num_validation_batches,
epochs=epochs,
callbacks=callbacks)
except KeyboardInterrupt as interrupted:
# Restore the last saved checkpoint here
self.model = load_model(checkpoint_path)
if self.epoch == 0:
print(
'This model has not finished a complete epoch, weights will be saved without configuration.'
)
raise interrupted
def test_saving_model_with_long_layer_names():
# This layer name will make the `layers_name` HDF5 attribute blow
# out of proportion. Note that it fits into the internal HDF5
# attribute memory limit on its own but because h5py converts
# the list of layer names into numpy array, which uses the same
# amout of memory for every item, it increases the memory
# requirements substantially.
x = Input(shape=(2, ), name='input_' + ('x' * (2**15)))
f = x
for i in range(4):
f = Dense(2, name='dense_%d' % (i, ))(f)
model = Model(inputs=[x], outputs=[f])
model.compile(loss='mse', optimizer='adam', metrics=['acc'])
x = np.random.random((1, 2))
y = np.random.random((1, 2))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
# Check that the HDF5 files contains chunked array
# of layer names.
with h5py.File(fname, 'r') as h5file:
n_layer_names_arrays = len([
attr for attr in h5file['model_weights'].attrs
if attr.startswith('layer_names')
])
os.remove(fname)
# The chunking of layer names array should have happened.
assert n_layer_names_arrays > 0
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def make_checkpoint(self, gen, steps, rewards, t_start, p):
if self.checkpoint_every and (gen is None
or gen % self.checkpoint_every == 0):
# for i in range(n_tests):
# tup = self.fitnessfun(self.env, self.model)
# test_reward += tup[0]
# wins += tup[2]
# Test current model
n_tests = 30
inputs = [{
'env': env,
'model': model
} for env, model in zip([self.env] * n_tests, [self.model] *
n_tests)]
output = p.map(self.evaluate_fitness, inputs)
test_rewards = [d['reward'] for d in output]
test_rewards.extend([d['reward_antithetic'] for d in output])
wins = [d['win'] for d in output]
wins.extend([d['win_antithetic'] for d in output])
test_reward = np.mean(test_rewards)
win_rate = np.sum(wins) / len(wins)
# Store results
self.results['generations'].append(gen)
self.results['steps'].append(steps)
self.results['test_rewards'].append(test_reward)
self.results['time'].append(time.time() - t_start)
self.results['weight_norm'].append(
self.get_weight_norms(self.weights))
self.results['mean_pop_rewards'].append(np.mean(rewards))
self.results['win_rate'].append(win_rate)
self.print_progress(gen)
# Save model
save_model(self.model, os.path.join(self.save_dir, 'model.h5'))
with open(os.path.join(self.save_dir, 'model.json'), 'w') as f:
f.write(self.model.to_json())
# Save results
with open(os.path.join(self.save_dir, 'results.pkl'), 'wb') as f:
pickle.dump(self.results, f, protocol=pickle.HIGHEST_PROTOCOL)
def train_KerasBinaryClassifier(self, X_train, y_train):
# Use Tenserflow backend
sess = tf.Session()
K.set_session(sess)
def model():
model = models.Sequential([
layers.Dense(128,
input_dim=X_train.shape[1],
activation='relu'),
layers.Dropout(0.5),
layers.Dense(1, activation='sigmoid')
])
model.compile(loss='binary_crossentropy',
optimizer='rmsprop',
metrics=['accuracy'])
return model
early_stopping = callbacks.EarlyStopping(monitor='val_loss',
patience=1,
verbose=0,
mode='auto')
pipe = pipeline.Pipeline([('rescale', preprocessing.StandardScaler()),
('nn',
KerasClassifier(build_fn=model,
nb_epoch=10,
batch_size=128,
validation_split=0.2,
callbacks=[early_stopping]))
])
pipe.fit(X_train, y_train)
model_step = pipe.steps.pop(-1)[1]
joblib.dump(pipe, os.path.join(self.directory, 'pipeline.pkl'))
print("Trained Model is Saved at relative path inside PROJECT_DIR ",
self.directory)
models.save_model(model_step.model,
os.path.join(self.directory, 'model.h5'))
return
def training(self):
stepsPerEpochs = self.train_generator.samples // self.batchSize
#stepsPerEpochs = self.validation_generator.samples//self.batchSize
validationSteps = self.validation_generator.samples // self.batchSize
#with tf.device('/gpu:1'):
# =============================================================================
# config = tf.ConfigProto( device_count = {'GPU': 1 , 'CPU': 56} )
# sess = tf.Session(config=config)
# keras.backend.set_session(sess)
# =============================================================================
self.hist = self.model.fit_generator(
self.train_generator,
steps_per_epoch=stepsPerEpochs,
epochs=self.epochs,
validation_data=self.validation_generator,
validation_steps=validationSteps,
verbose=1,
callbacks=[self.reduceLR, self.EarlyCheckPt, self.ModelCkPt]
#AltModelCheckpoint(self.path+'Models/OCR_Epochs.h5',self.baseModel)]
)
#except Exception as e:
#print("Got issues : ", e)
#saving the model after final Epoch
save_model(self.model,
self.path + 'Models/Seperate_Models/Final_Alphabets_v3.h5')
self.model.set_weights(self.model.get_weights())
self.model.save(filepath=self.path +
'Models/Seperate_Models/Final_Alphabets_v3.h5')
N = np.arange(0, self.epochs)
plt.style.use("ggplot")
plt.figure()
plt.plot(N, self.hist.history["loss"], label="train_loss")
plt.plot(N, self.hist.history["val_loss"], label="val_loss")
plt.plot(N, self.hist.history["acc"], label="train_acc")
plt.plot(N, self.hist.history["val_acc"], label="val_acc")
plt.title("Training Loss and Accuracy (Simple NN)")
plt.xlabel("Epoch #")
plt.ylabel("Loss/Accuracy")
plt.legend()
plt.savefig(self.path + 'OutputAlphabets_v3.png')
def main():
np.random.seed(0)
assert keras.backend.backend() == "tensorflow"
flags.DEFINE_bool('NUM_EPOCHS', args.epochs, 'Number of epochs')
# Get MNIST test data
x_train, y_train, _, _, x_test, y_test = load_dataset_GTSRB(
n_channel=N_CHANNEL, train_file_name=TRAIN_FILE_NAME)
# Convert to one-hot encoding
y_train = keras.utils.to_categorical(y_train, NUM_LABELS)
y_test = keras.utils.to_categorical(y_test, NUM_LABELS)
x = K.placeholder(shape=(None, HEIGHT, WIDTH, N_CHANNEL))
y = K.placeholder(shape=(BATCH_SIZE, NUM_LABELS))
eps = args.eps
x_advs = [None]
model = build_mltscl()
if args.iter == 0:
logits = model(x)
grad = gen_grad(x, logits, y, loss='training')
x_advs = symbolic_fgs(x, grad, eps=eps)
elif args.iter == 1:
x_advs = symb_iter_fgs(model, x, y, steps=40, alpha=0.01, eps=args.eps)
# Train an MNIST model
tf_train(x, y, model, x_train, y_train, x_advs=x_advs, benign=args.ben)
# Finally print the result!
test_error = tf_test_error_rate(model, x, x_test, y_test)
print(test_error)
# Specify model name
model_name = './tmp/multiscale_adv'
save_model(model, model_name)
json_string = model.to_json()
with open(model_name + '.json', 'wr') as f:
f.write(json_string)
def train(model, training_data, batch_size=256, epochs=10):
(x_train, y_train), (x_test, y_test), mapping, nb_classes = training_data
y_train = np_utils.to_categorical(y_train, nb_classes)
y_test = np_utils.to_categorical(y_test, nb_classes)
tb_callback = keras.callbacks.TensorBoard(log_dir='./model/Graph',
histogram_freq=0, write_graph=True, write_images=True)
model.fit(x_train, y_train, batch_size=batch_size, epochs=epochs, verbose=1,
validation_data=(x_test, y_test), callbacks=[tb_callback])
score = model.evaluate(x_test, y_test, verbose=0)
print('Test score:', score[0])
print('Test accuracy:', score[1])
model_yaml = model.to_yaml()
with open('model/model.yaml', 'w') as yaml_file:
yaml_file.write(model_yaml)
save_model(model, 'model/model.h5')
def train_model(Xi, Yi, idx, init_val):
# Create the LSTM model
lstm_model = create_lstm_model(input_shape=(1, Xi.shape[1], Xi.shape[2]))
# Train the model for <n_epochs>
for i in range(N_TRAINING_EPOCHS):
lstm_model.fit(Xi, Yi, epochs=1, batch_size=1, verbose=0, shuffle=False)
lstm_model.reset_states()
mse = evaluate_model(lstm_model, Xi, Yi, init_val)
print idx, mse
# Save performance score and trained model:
with open("./model_performance/" + DATASET + "/" + str(idx) + ".pkl", "wb") as lf:
pickle.dump(mse, lf)
save_model(lstm_model, "./models/" + DATASET + "/" + str(idx) + ".kmodel")
def save_model_to_mongo(self, model: Any, trained_from: date = None, trained_upto: date = None):
fs = connect_grid()
if self.keras:
with NamedTemporaryFile(suffix='.hdf5', delete=True) as ntf:
save_model(model, ntf.name, overwrite=True)
with BytesIO(Binary(ntf.read())) as f:
objectId = fs.put(f, filename=self.model_name, chunk_size=2097152)
else:
with BytesIO(Binary(dumps(model))) as f:
objectId = fs.put(f, filename=self.model_name, chunk_size=2097152)
PythonModel(
grid_fileid=objectId,
model_name=self.model_name,
symbol=self.symbol,
trained_from=trained_from,
trained_upto=trained_upto,
).save()
def test_fuctional_model_saving():
input = Input(shape=(3,))
x = Dense(2)(input)
output = Dense(3)(x)
model = Model(input, output)
model.compile(loss=objectives.MSE,
optimizer=optimizers.RMSprop(lr=0.0001),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
out = model.predict(x)
fname = 'tmp_' + str(np.random.randint(10000)) + '.h5'
save_model(model, fname)
model = load_model(fname)
out2 = model.predict(x)
assert_allclose(out, out2)
def continue_train(self, lr=1e-4, epochs=1, resume_model='last'):
if resume_model == 'last':
model = load_model(self.last_model_path)
else:
model = load_model(self.best_model_path)
model.summary()
X_train, X_test, y_train, y_test = self.get_data()
model.fit(x=X_train,
y=y_train,
batch_size=self.batch_size,
epochs=epochs,
verbose=1,
callbacks=self.get_callbacks(),
validation_data=(X_test, y_test),
shuffle=True,
# initial_epoch=start_epoch,
steps_per_epoch=None, validation_steps=None)
save_model(model, self.last_model_path)
def NN_model_train(self, trainX, trainY, testX, testY, model_save_path):
"""
:param trainX: training data set
:param trainY: expect value of training data
:param testX: test data segt
:param testY: expect value of test data
:param model_save_path: h5 file to store the trained model
:param override: override existing models
:return: model after training
"""
input_dim = trainX[0].shape[1]
output_dim = trainY.shape[1]
# print predefined parameters of current model:
model = Sequential()
# applying a LSTM layer with x dim output and y dim input. Use dropout parameter to avoid overfit
model.add(LSTM(output_dim=self.lstm_output_dim,
input_dim=input_dim,
activation=self.activation_lstm,
dropout_U=self.drop_out,
return_sequences=True))
for i in range(self.lstm_layer-2):
model.add(LSTM(output_dim=self.lstm_output_dim,
activation=self.activation_lstm,
dropout_U=self.drop_out,
return_sequences=True ))
# return sequences should be False to avoid dim error when concatenating with dense layer
model.add(LSTM(output_dim=self.lstm_output_dim, activation=self.activation_lstm, dropout_U=self.drop_out))
# applying a full connected NN to accept output from LSTM layer
for i in range(self.dense_layer-1):
model.add(Dense(output_dim=self.lstm_output_dim, activation=self.activation_dense))
model.add(Dropout(self.drop_out))
model.add(Dense(output_dim=output_dim, activation=self.activation_last))
# configure the learning process
model.compile(loss=self.loss, optimizer=self.optimizer, metrics=['accuracy'])
# train the model with fixed number of epoches
model.fit(x=trainX, y=trainY, nb_epoch=self.nb_epoch, batch_size=self.batch_size, validation_data=(testX, testY))
plot_model(model, to_file='model.png')
score = model.evaluate(trainX, trainY, self.batch_size)
print ("Model evaluation: {}".format(score)) # [0.29132906793909186, 0.91639871695672837]
# store model to json file
save_model(model, model_save_path)
def test_saving_custom_activation_function():
x = Input(shape=(3,))
output = Dense(3, activation=K.cos)(x)
model = Model(x, output)
model.compile(loss=losses.MSE,
optimizer=optimizers.RMSprop(lr=0.0001),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname, custom_objects={'cos': K.cos})
os.remove(fname)
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_loop_model_saving():
model = Sequential()
model.add(Dense(2, input_shape=(3,)))
model.compile(loss=losses.MSE,
optimizer=optimizers.RMSprop(lr=0.0001),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 3))
y = np.random.random((1, 2))
_, fname = tempfile.mkstemp('.h5')
for _ in range(3):
model.train_on_batch(x, y)
save_model(model, fname, overwrite=True)
out = model.predict(x)
new_model = load_model(fname)
os.remove(fname)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_loop_model_saving():
model = Sequential()
model.add(Dense(2, input_shape=(3, )))
model.compile(loss=losses.MSE,
optimizer=optimizers.RMSprop(lr=0.0001),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 3))
y = np.random.random((1, 2))
_, fname = tempfile.mkstemp('.h5')
for _ in range(3):
model.train_on_batch(x, y)
save_model(model, fname, overwrite=True)
out = model.predict(x)
new_model = load_model(fname)
os.remove(fname)
out2 = new_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_model_saving_to_pre_created_h5py_file():
model, x = _get_sample_model_and_input()
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
with h5py.File(fname, mode='r+') as h5file:
save_model(model, h5file)
loaded_model = load_model(h5file)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
# test non-default options in h5
with h5py.File('does not matter', driver='core',
backing_store=False) as h5file:
save_model(model, h5file)
loaded_model = load_model(h5file)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
with h5py.File(fname, mode='r+') as h5file:
g = h5file.create_group('model')
save_model(model, g)
loaded_model = load_model(g)
out2 = loaded_model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_saving_overwrite_option():
model = Sequential()
model.add(Dense(2, input_shape=(3,)))
org_weights = model.get_weights()
new_weights = [np.random.random(w.shape) for w in org_weights]
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model.set_weights(new_weights)
with patch('keras.engine.saving.ask_to_proceed_with_overwrite') as ask:
ask.return_value = False
save_model(model, fname, overwrite=False)
ask.assert_called_once()
new_model = load_model(fname)
for w, org_w in zip(new_model.get_weights(), org_weights):
assert_allclose(w, org_w)
ask.return_value = True
save_model(model, fname, overwrite=False)
assert ask.call_count == 2
new_model = load_model(fname)
for w, new_w in zip(new_model.get_weights(), new_weights):
assert_allclose(w, new_w)
os.remove(fname)
def test_saving_overwrite_option_gcs():
model = Sequential()
model.add(Dense(2, input_shape=(3,)))
org_weights = model.get_weights()
new_weights = [np.random.random(w.shape) for w in org_weights]
with tf_file_io_proxy('keras.engine.saving.tf_file_io') as file_io_proxy:
gcs_filepath = file_io_proxy.get_filepath(
filename='test_saving_overwrite_option_gcs.h5')
# we should not use same filename in several tests to allow for parallel
# execution
save_model(model, gcs_filepath)
model.set_weights(new_weights)
with patch('keras.engine.saving.ask_to_proceed_with_overwrite') as ask:
ask.return_value = False
save_model(model, gcs_filepath, overwrite=False)
ask.assert_called_once()
new_model = load_model(gcs_filepath)
for w, org_w in zip(new_model.get_weights(), org_weights):
assert_allclose(w, org_w)
ask.return_value = True
save_model(model, gcs_filepath, overwrite=False)
assert ask.call_count == 2
new_model = load_model(gcs_filepath)
for w, new_w in zip(new_model.get_weights(), new_weights):
assert_allclose(w, new_w)
file_io_proxy.delete_file(gcs_filepath) # cleanup
def test_saving_model_with_long_layer_names():
# This layer name will make the `layers_name` HDF5 attribute blow
# out of proportion. Note that it fits into the internal HDF5
# attribute memory limit on its own but because h5py converts
# the list of layer names into numpy array, which uses the same
# amout of memory for every item, it increases the memory
# requirements substantially.
x = Input(shape=(2,), name='input_' + ('x' * (2**15)))
f = x
for i in range(4):
f = Dense(2, name='dense_%d' % (i,))(f)
model = Model(inputs=[x], outputs=[f])
model.compile(loss='mse', optimizer='adam', metrics=['acc'])
x = np.random.random((1, 2))
y = np.random.random((1, 2))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
# Check that the HDF5 files contains chunked array
# of layer names.
with h5py.File(fname, 'r') as h5file:
n_layer_names_arrays = len([attr for attr in h5file['model_weights'].attrs
if attr.startswith('layer_names')])
os.remove(fname)
# The chunking of layer names array should have happened.
assert n_layer_names_arrays > 0
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)
def test_functional_model_saving():
inputs = Input(shape=(3,))
x = Dense(2)(inputs)
outputs = Dense(3)(x)
model = Model(inputs, outputs)
model.compile(loss=losses.MSE,
optimizer=optimizers.RMSprop(lr=0.0001),
metrics=[metrics.categorical_accuracy])
x = np.random.random((1, 3))
y = np.random.random((1, 3))
model.train_on_batch(x, y)
out = model.predict(x)
_, fname = tempfile.mkstemp('.h5')
save_model(model, fname)
model = load_model(fname)
os.remove(fname)
out2 = model.predict(x)
assert_allclose(out, out2, atol=1e-05)