def test_KnossosDataset_initialize_without_conf__boundary(tmp_path, boundary):
kd = KnossosDataset()
kd.initialize_without_conf(str(tmp_path),
boundary=boundary,
scale=(1, 1, 1),
experiment_name='test',
mags=[1],
verbose=True)
def test_KnossosDataset_initialize_without_conf__mags(tmp_path):
kd = KnossosDataset()
with pytest.raises(AssertionError):
kd.initialize_without_conf(str(tmp_path),
boundary=(7, 9, 10),
scale=(1, 1, 1),
experiment_name='test',
mags=None,
verbose=True)
def test_KnossosDataset_initialize_without_conf__conf_exist(tmp_path):
from pathlib import Path
kd = KnossosDataset()
kd.initialize_without_conf(str(tmp_path),
boundary=(7, 9, 10),
scale=(1, 1, 1),
experiment_name='test',
mags=[1],
verbose=True)
assert (Path(kd.conf_path).is_file())
def test_Knossosdataset__initalize_without_conf__robust_magfolder_detection(
tmp_path, existing_mag, expected_mag):
(tmp_path / existing_mag).mkdir()
kd = KnossosDataset()
kd.initialize_without_conf(str(tmp_path),
boundary=(7, 9, 10),
scale=(1, 1, 1),
experiment_name='test',
mags=[1],
verbose=True)
assert ((tmp_path / expected_mag).is_dir())
def test_KnossosDataset_initalize_without_conf__mags_1_make_mag_folder_False(
tmp_path):
kd = KnossosDataset()
with pytest.raises(AssertionError):
kd.initialize_without_conf(str(tmp_path),
boundary=(7, 9, 19),
scale=(1, 1, 1),
experiment_name='test',
mags=[1],
make_mag_folders=False,
verbose=True)