def __init__(self, parent):
wx.Dialog.__init__(self, parent.GetParent(), -1, 'Edit Plan')
self.parent = parent
self.plan = parent.plan
strows = wx.StaticText(self, -1, 'Bad rows:')
stcolumns = wx.StaticText(self, -1, 'Bad columns:')
stpixels = wx.StaticText(self, -1, 'Bad Pixel (x,y):')
pixels = ', '.join(map(str, self.plan['pixels']))
rows = ', '.join(map(str, self.plan['rows']))
columns = ', '.join(map(str, self.plan['columns']))
self.tcrows = wx.TextCtrl(self, -1, rows)
self.tccolumns = wx.TextCtrl(self, -1, columns)
self.tcpixels = wx.TextCtrl(self, -1, pixels)
self.cdespike = wx.CheckBox(self, -1, 'Despike images')
self.cdespike_size = IntEntry(self, -1, min=1, chars=4)
self.cdespike_threshold = FloatEntry(self, -1, min=0, chars=4)
self.cdespike.SetValue(self.plan['despike'])
self.cdespike_size.SetValue(self.plan['despike size'])
self.cdespike_threshold.SetValue(self.plan['despike threshold'])
szdespike = wx.GridBagSizer(5, 5)
szdespike.Add(self.cdespike, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Neighborhood size:')
szdespike.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szdespike.Add(
self.cdespike_size, (1, 1), (1, 1),
wx.ALIGN_RIGHT | wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Threshold:')
szdespike.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szdespike.Add(
self.cdespike_threshold, (2, 1), (1, 1),
wx.ALIGN_RIGHT | wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
szdespike.AddGrowableCol(1)
bsave = wx.Button(self, wx.ID_OK, 'Save')
bcancel = wx.Button(self, wx.ID_CANCEL, 'Cancel')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(bsave, (0, 0), (1, 1), wx.ALIGN_CENTER)
szbutton.Add(bcancel, (0, 1), (1, 1), wx.ALIGN_CENTER)
szplan = wx.GridBagSizer(5, 5)
szplan.Add(strows, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szplan.Add(self.tcrows, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szplan.Add(stcolumns, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szplan.Add(self.tccolumns, (1, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szplan.Add(stpixels, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szplan.Add(self.tcpixels, (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szplan.Add(szdespike, (3, 0), (1, 2), wx.EXPAND)
sz = wx.GridBagSizer(5, 5)
sz.Add(szplan, (0, 0), (1, 1), wx.ALIGN_RIGHT | wx.ALL, border=5)
sz.Add(szbutton, (1, 0), (1, 1), wx.ALIGN_RIGHT | wx.ALL, border=5)
self.SetSizerAndFit(sz)
self.Bind(wx.EVT_BUTTON, self.onSave, bsave)
def initialize(self): leginon.gui.wx.Settings.ScrolledDialog.initialize(self) sb = wx.StaticBox(self, -1, 'Blob finding') sbszblobs = wx.StaticBoxSizer(sb, wx.VERTICAL) self.widgets['blobs border'] = IntEntry(self, -1, min=0, chars=6) self.widgets['blobs max'] = IntEntry(self, -1, min=0, chars=6) self.widgets['blobs max size'] = IntEntry(self, -1, min=0, chars=6) szblobs = wx.GridBagSizer(5, 5) label = wx.StaticText(self, -1, 'Border:') szblobs.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) szblobs.Add(self.widgets['blobs border'], (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT) label = wx.StaticText(self, -1, 'Max. blobs:') szblobs.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) szblobs.Add(self.widgets['blobs max'], (1, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT) label = wx.StaticText(self, -1, 'Max. blob size:') szblobs.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) szblobs.Add(self.widgets['blobs max size'], (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE|wx.ALIGN_RIGHT) szblobs.AddGrowableCol(1) sbszblobs.Add(szblobs, 1, wx.EXPAND|wx.ALL, 5) self.btest = wx.Button(self, -1, 'Test') szbutton = wx.GridBagSizer(5, 5) szbutton.Add(self.btest, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT) szbutton.AddGrowableCol(0) self.Bind(wx.EVT_BUTTON, self.onTestButton, self.btest) return [sbszblobs, szbutton]
def addRCTSettings(self): sb = wx.StaticBox(self, -1, 'RCT Options') sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL) sizer = wx.GridBagSizer(5, 4) bordersize = 3 label = wx.StaticText(self, -1, 'List of Tilts to Collect (in degrees)') sizer.Add(label, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL) self.widgets['tilts'] = Entry(self, -1, chars=15, style=wx.ALIGN_RIGHT) sizer.Add(self.widgets['tilts'], (0,2), (1,2), wx.ALL|wx.EXPAND|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Maximum Tilt Stepsize (in degrees)') sizer.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['stepsize'] = IntEntry(self, -1, chars=2, value='15') sizer.Add(self.widgets['stepsize'], (1,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Pause Between Steps') sizer.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['pause'] = FloatEntry(self, -1, chars=2, value='1') sizer.Add(self.widgets['pause'], (1,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) ''' label = wx.StaticText(self, -1, 'Min Feature Size') sizer.Add(label, (2,0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['minsize'] = FloatEntry(self, -1, chars=6, value='0.0') #sizer.Add(self.widgets['minsize'], (2,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Max Feature Size') sizer.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['maxsize'] = FloatEntry(self, -1, chars=6, value='0.0') sizer.Add(self.widgets['maxsize'], (2,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Median Filter (pixels)') sizer.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['medfilt'] = IntEntry(self, -1, chars=2, value='0') sizer.Add(self.widgets['medfilt'], (3,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) ''' label = wx.StaticText(self, -1, 'LowPass Filter (pixels)') sizer.Add(label, (3, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['lowfilt'] = IntEntry(self, -1, chars=2, value='0') sizer.Add(self.widgets['lowfilt'], (3,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Drift threshold') sizer.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) self.widgets['drift threshold'] = FloatEntry(self, -1, chars=6, value='0.0') sizer.Add(self.widgets['drift threshold'], (4,1), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) label = wx.StaticText(self, -1, 'Drift preset') sizer.Add(label, (4, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL) presets = self.node.presetsclient.getPresetNames() self.widgets['drift preset'] = PresetChoice(self, -1) self.widgets['drift preset'].setChoices(presets) sizer.Add(self.widgets['drift preset'], (4,3), (1,1), wx.ALL|wx.ALIGN_CENTER_VERTICAL, bordersize) sbsz.Add(sizer, 0, wx.ALIGN_CENTER|wx.ALL, 2) return sbsz
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Blob Finding')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['threshold'] = FloatEntry(self, -1, min=0, chars=6)
self.widgets['blobs'] = {}
self.widgets['blobs']['border'] = IntEntry(self, -1, min=0, chars=6)
self.widgets['blobs']['max'] = IntEntry(self, -1, min=0, chars=6)
self.widgets['blobs']['min size'] = IntEntry(self, -1, min=0, chars=6)
self.widgets['blobs']['max size'] = IntEntry(self, -1, min=0, chars=6)
self.widgets['blobs']['min mean'] = FloatEntry(self, -1, chars=6)
self.widgets['blobs']['max mean'] = FloatEntry(self, -1, chars=6)
self.widgets['blobs']['min stdev'] = FloatEntry(self, -1, chars=6)
self.widgets['blobs']['max stdev'] = FloatEntry(self, -1, chars=6)
szrange = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Min.')
szrange.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'Max.')
szrange.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'Blob size:')
szrange.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER)
szrange.Add(self.widgets['blobs']['min size'], (1, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
szrange.Add(self.widgets['blobs']['max size'], (1, 2), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Blob mean:')
szrange.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER)
szrange.Add(self.widgets['blobs']['min mean'], (2, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
szrange.Add(self.widgets['blobs']['max mean'], (2, 2), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Blob stdev.:')
szrange.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER)
szrange.Add(self.widgets['blobs']['min stdev'], (3, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
szrange.Add(self.widgets['blobs']['max stdev'], (3, 2), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
sz = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Threshold:')
sz.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['threshold'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Border:')
sz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['blobs']['border'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Max. number of blobs:')
sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['blobs']['max'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
sz.Add(szrange, (3, 0), (1, 2), wx.ALIGN_CENTER)
sz.AddGrowableCol(1)
sbsz.Add(sz, 1, wx.EXPAND | wx.ALL, 5)
return [sbsz]
class Dialog(wx.Dialog):
def __init__(self, parent, title, ring=None):
wx.Dialog.__init__(self, parent, -1, title)
sbszring = wx.StaticBoxSizer(wx.StaticBox(self, -1, 'Ring'),
wx.VERTICAL)
self.ieinside = IntEntry(self, -1, min=0, chars=4)
self.ieoutside = IntEntry(self, -1, min=0, chars=4)
if ring is not None:
if not parent.validate(ring):
raise ValueError
inside, outside = ring
self.ieinside.SetValue(inside)
self.ieoutside.SetValue(outside)
szring = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Inside')
szring.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'Outside')
szring.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'Diameter')
szring.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szring.Add(self.ieinside, (1, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
szring.Add(self.ieoutside, (1, 2), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'pixels')
szring.Add(label, (1, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszring.Add(szring, 1, wx.EXPAND | wx.ALL, 5)
self.bok = wx.Button(self, wx.ID_OK, 'OK')
self.bcancel = wx.Button(self, wx.ID_CANCEL, 'Cancel')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.bok, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.Add(self.bcancel, (0, 1), (1, 1), wx.ALIGN_CENTER)
szbutton.AddGrowableCol(0)
sz = wx.GridBagSizer(5, 5)
sz.Add(sbszring, (0, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
sz.Add(szbutton, (1, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
self.SetSizerAndFit(sz)
self.Bind(wx.EVT_BUTTON, self.onOK, self.bok)
def onOK(self, evt):
ring = (self.ieinside.GetValue(), self.ieoutside.GetValue())
if not self.GetParent().validate(ring):
dialog = wx.MessageDialog(self, 'Invalid ring dimensions', 'Error',
wx.OK | wx.ICON_ERROR)
dialog.ShowModal()
dialog.Destroy()
else:
self.ring = ring
evt.Skip()
class Dialog(wx.Dialog): def __init__(self, parent, title, target=None, targetname='Relative target'): wx.Dialog.__init__(self, parent, -1, title) sbsztarget = wx.StaticBoxSizer(wx.StaticBox(self, -1, 'Target'), wx.VERTICAL) self.targetname = targetname self.iex = IntEntry(self, -1, chars=4) self.iey = IntEntry(self, -1, chars=4) if target is not None: if not parent.validate(target): raise ValueError x, y = target self.iex.SetValue(x) self.iey.SetValue(y) sztarget = wx.GridBagSizer(5, 5) label = wx.StaticText(self, -1, 'x') sztarget.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER) label = wx.StaticText(self, -1, 'y') sztarget.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER) label = wx.StaticText(self, -1, self.targetname) sztarget.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL) sztarget.Add(self.iex, (1, 1), (1, 1), wx.ALIGN_CENTER|wx.FIXED_MINSIZE) sztarget.Add(self.iey, (1, 2), (1, 1), wx.ALIGN_CENTER|wx.FIXED_MINSIZE) label = wx.StaticText(self, -1, 'pixels') sztarget.Add(label, (1, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL) sbsztarget.Add(sztarget, 1, wx.EXPAND|wx.ALL, 5) self.bok = wx.Button(self, wx.ID_OK, 'OK') self.bcancel = wx.Button(self, wx.ID_CANCEL, 'Cancel') szbutton = wx.GridBagSizer(5, 5) szbutton.Add(self.bok, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL|wx.ALIGN_RIGHT) szbutton.Add(self.bcancel, (0, 1), (1, 1), wx.ALIGN_CENTER) szbutton.AddGrowableCol(0) sz = wx.GridBagSizer(5, 5) sz.Add(sbsztarget, (0, 0), (1, 1), wx.EXPAND|wx.ALL, 10) sz.Add(szbutton, (1, 0), (1, 1), wx.EXPAND|wx.ALL, 10) self.SetSizerAndFit(sz) self.Bind(wx.EVT_BUTTON, self.onOK, self.bok) def onOK(self, evt): target = (self.iex.GetValue(), self.iey.GetValue()) if not self.GetParent().validate(target): dialog = wx.MessageDialog(self, 'Invalid target dimensions', 'Error', wx.OK|wx.ICON_ERROR) dialog.ShowModal() dialog.Destroy() else: self.target = target evt.Skip()
def initialize(self):
sizers = leginon.gui.wx.Acquisition.ScrolledSettings.initialize(self)
sb = wx.StaticBox(self, -1, 'Tilt Imaging and Correlation')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
sizer = wx.GridBagSizer(5, 5)
self.widgets['tableau type'] = Choice(self, -1, choices=self.node.tableau_types)
label = wx.StaticText(self, -1, 'Tableau Type (method-display):')
sizer.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['tableau type'], (0, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['beam tilt'] = FloatEntry(self, -1, min=0.0, allownone=False, chars=6, value='0.005')
bt_sizer = wx.GridBagSizer(5, 5)
bt_sizer.Add(self.widgets['beam tilt'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL|wx.FIXED_MINSIZE)
bt_sizer.Add(wx.StaticText(self, -1, 'radian'), (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Beam Tilt:')
sizer.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(bt_sizer, (1, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['sites'] = IntEntry(self, -1, min=0, allownone=False, chars=4, value='0')
label = wx.StaticText(self, -1, 'Number of tilt directions:')
sizer.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['sites'], (2, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['startangle'] = FloatEntry(self, -1, min=0, allownone=False, chars=4, value='0')
label = wx.StaticText(self, -1, 'Start Angle:')
sizer.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['startangle'], (3, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'degrees')
sizer.Add(label, (3, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['correlation type'] = Choice(self, -1, choices=self.node.correlation_types)
label = wx.StaticText(self, -1, 'Correlation Type:')
sizer.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['correlation type'], (4, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['tableau binning'] = IntEntry(self, -1, min=1, allownone=False, chars=4, value='2')
label = wx.StaticText(self, -1, 'Tableau Binning:')
sizer.Add(label, (5, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['tableau binning'], (5, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['beam tilt count'] = IntEntry(self, -1, min=1, allownone=False, chars=4, value='1')
label = wx.StaticText(self, -1, 'Beam Tilt Count:')
sizer.Add(label, (6, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['beam tilt count'], (6, 1), (1, 1), wx.ALIGN_CENTER)
self.widgets['tableau split'] = IntEntry(self, -1, min=1, allownone=False, chars=4, value='8')
label = wx.StaticText(self, -1, 'Tableau Split:')
sizer.Add(label, (7, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sizer.Add(self.widgets['tableau split'], (7, 1), (1, 1), wx.ALIGN_CENTER)
sbsz.Add(sizer, 0, wx.ALIGN_CENTER_HORIZONTAL|wx.ALL, 5)
self.widgets['tableau type'].Bind(wx.EVT_CHOICE, self.onTableauTypeChoice)
return sizers + [sbsz]
def createOffsetSizer(self):
# set widgets
self.widgets['target offset row'] = IntEntry(self, -1, chars=6)
self.widgets['target offset col'] = IntEntry(self, -1, chars=6)
# make sizer
sz_offset = wx.BoxSizer(wx.HORIZONTAL)
sz_offset.Add(wx.StaticText(self, -1, 'offset target x:'))
sz_offset.Add(self.widgets['target offset col'])
sz_offset.Add(wx.StaticText(self, -1, 'y:'))
sz_offset.Add(self.widgets['target offset row'])
return sz_offset
def __init__(self,
parent,
title,
target=None,
targetname='Relative target'):
wx.Dialog.__init__(self, parent, -1, title)
sbsztarget = wx.StaticBoxSizer(wx.StaticBox(self, -1, 'Target'),
wx.VERTICAL)
self.targetname = targetname
self.iex = IntEntry(self, -1, chars=4)
self.iey = IntEntry(self, -1, chars=4)
if target is not None:
if not parent.validate(target):
raise ValueError
x, y = target
self.iex.SetValue(x)
self.iey.SetValue(y)
sztarget = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'x')
sztarget.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'y')
sztarget.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, self.targetname)
sztarget.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sztarget.Add(self.iex, (1, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
sztarget.Add(self.iey, (1, 2), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'pixels')
sztarget.Add(label, (1, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbsztarget.Add(sztarget, 1, wx.EXPAND | wx.ALL, 5)
self.bok = wx.Button(self, wx.ID_OK, 'OK')
self.bcancel = wx.Button(self, wx.ID_CANCEL, 'Cancel')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.bok, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.Add(self.bcancel, (0, 1), (1, 1), wx.ALIGN_CENTER)
szbutton.AddGrowableCol(0)
sz = wx.GridBagSizer(5, 5)
sz.Add(sbsztarget, (0, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
sz.Add(szbutton, (1, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
self.SetSizerAndFit(sz)
self.Bind(wx.EVT_BUTTON, self.onOK, self.bok)
def addBasicTiltSettings(self):
sb = wx.StaticBox(self, -1, 'Tilt Options')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
sizer = wx.GridBagSizer(5, 4)
bordersize = 3
label = wx.StaticText(self, -1, 'Activation Interval')
sizer.Add(label, (0, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
self.widgets['activation interval'] = IntEntry(self,
-1,
chars=5,
style=wx.ALIGN_RIGHT)
sizer.Add(self.widgets['activation interval'], (0, 2), (1, 2),
wx.ALL | wx.EXPAND | wx.ALIGN_CENTER_VERTICAL, bordersize)
label = wx.StaticText(self, -1,
'List of Tilts to Collect (in degrees)')
sizer.Add(label, (1, 0), (1, 2), wx.ALIGN_CENTER_VERTICAL)
self.widgets['tilts'] = Entry(self, -1, chars=15, style=wx.ALIGN_RIGHT)
sizer.Add(self.widgets['tilts'], (1, 2), (1, 2),
wx.ALL | wx.EXPAND | wx.ALIGN_CENTER_VERTICAL, bordersize)
label = wx.StaticText(self, -1, 'Min Feature Size')
sizer.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['minsize'] = FloatEntry(self, -1, chars=6, value='0.0')
sizer.Add(self.widgets['minsize'], (2, 1), (1, 1),
wx.ALL | wx.ALIGN_CENTER_VERTICAL, bordersize)
label = wx.StaticText(self, -1, 'Max Feature Size')
sizer.Add(label, (2, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['maxsize'] = FloatEntry(self, -1, chars=6, value='0.0')
sizer.Add(self.widgets['maxsize'], (2, 3), (1, 1),
wx.ALL | wx.ALIGN_CENTER_VERTICAL, bordersize)
label = wx.StaticText(self, -1, 'Median Filter (pixels)')
sizer.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['medfilt'] = IntEntry(self, -1, chars=2, value='0')
sizer.Add(self.widgets['medfilt'], (3, 1), (1, 1),
wx.ALL | wx.ALIGN_CENTER_VERTICAL, bordersize)
label = wx.StaticText(self, -1, 'LowPass Filter (pixels)')
sizer.Add(label, (3, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.widgets['lowfilt'] = FloatEntry(self, -1, chars=2, value='0.0')
sizer.Add(self.widgets['lowfilt'], (3, 3), (1, 1),
wx.ALL | wx.ALIGN_CENTER_VERTICAL, bordersize)
sbsz.Add(sizer, 0, wx.ALIGN_CENTER | wx.ALL, 2)
return sbsz
def onInitialize(self): c2sizer = wx.GridBagSizer(5, 5) label = wx.StaticText(self, -1, 'C2 size: ') c2sizer.Add(label, (0, 0), (1, 1), wx.ALIGN_LEFT) self.c2sizectrl = IntEntry(self, -1, chars=6) c2sizer.Add(self.c2sizectrl, (0, 1), (1, 1), wx.ALIGN_RIGHT) label = wx.StaticText(self, -1, 'um') c2sizer.Add(label, (0, 2), (1, 1), wx.ALIGN_LEFT) self.sz.Add(c2sizer, (0, 0), (1, 1), wx.EXPAND|wx.ALL,10) savebtn = wx.Button(self, -1, 'Save') self.sz.Add(savebtn, (1, 0), (1, 1), wx.EXPAND|wx.ALL,5) self.sz.AddGrowableCol(0) self.Bind(wx.EVT_BUTTON, self.onSave, savebtn)
def onInitialize(self):
mag1lab = wx.StaticText(self, -1, 'Mag 1:')
self.mag1 = IntEntry(self, -1, chars=8)
mag2lab = wx.StaticText(self, -1, 'Mag 2:')
self.mag2 = IntEntry(self, -1, chars=8)
p1lab = wx.StaticText(self, -1, 'Pixel 1:')
self.p1row = FloatEntry(self, -1, chars=4)
self.p1col = FloatEntry(self, -1, chars=4)
p2lab = wx.StaticText(self, -1, 'Pixel 2:')
self.p2row = FloatEntry(self, -1, chars=4)
self.p2col = FloatEntry(self, -1, chars=4)
angle1lab = wx.StaticText(self, -1, 'Angle 1')
self.angle1 = wx.StaticText(self, -1, '')
len1lab = wx.StaticText(self, -1, 'Length 1')
self.len1 = wx.StaticText(self, -1, '')
angle2lab = wx.StaticText(self, -1, 'Angle 2')
self.angle2 = wx.StaticText(self, -1, '')
len2lab = wx.StaticText(self, -1, 'Length 2')
self.len2 = wx.StaticText(self, -1, '')
calcp1 = wx.Button(self, -1, 'Calculate')
self.Bind(wx.EVT_BUTTON, self.calcp1, calcp1)
calcp2 = wx.Button(self, -1, 'Calculate')
self.Bind(wx.EVT_BUTTON, self.calcp2, calcp2)
self.sz.Add(mag1lab, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.mag1, (0, 1), (1, 2), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(mag2lab, (0, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.mag2, (0, 4), (1, 2), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(p1lab, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.p1row, (1, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.p1col, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(p2lab, (1, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.p2row, (1, 4), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.p2col, (1, 5), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(angle1lab, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.angle1, (2, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(angle2lab, (2, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.angle2, (2, 4), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(len1lab, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.len1, (3, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(len2lab, (3, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.len2, (3, 4), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(calcp1, (4, 0), (1, 3), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(calcp2, (4, 3), (1, 3), wx.ALIGN_CENTER_VERTICAL)
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Target Filter')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
targettypes = ['acquisition', 'focus', 'preview']
self.widgets['bypass'] = wx.CheckBox(self, -1, 'Bypass Filter')
self.widgets['target type'] = wx.Choice(self, -1, choices=targettypes)
self.widgets['user check'] = wx.CheckBox(
self, -1, 'Verify filter before submitting')
self.widgets['limit'] = IntEntry(self, -1, min=0, chars=6)
sz = wx.GridBagSizer(5, 10)
## filter
sz.Add(self.widgets['bypass'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Filtering Target Type')
sz.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['target type'], (0, 2), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['user check'], (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz.AddGrowableCol(0)
label = wx.StaticText(self, -1, 'Limit Targets to the center-most')
sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['limit'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return [sbsz]
def __init__(self, parent, title='Main'):
self.parent = parent
wx.StaticBoxSizer.__init__(self, wx.StaticBox(self.parent, -1, title),
wx.VERTICAL)
self.sz = wx.GridBagSizer(5, 5)
self.Add(self.sz, 1, wx.EXPAND|wx.ALL, 5)
parameterorder = [
'High tension',
'Magnification',
'Intensity',
'Spot size',
]
self.parameters = {
'High tension': wx.StaticText(self.parent, -1, ''),
'Magnification': wx.Choice(self.parent, -1),
'Intensity': FloatEntry(self.parent, -1, chars=7, allownone=True),
'Spot size': IntEntry(self.parent, -1, chars=2, allownone=True),
}
for i, p in enumerate(parameterorder):
st = wx.StaticText(self.parent, -1, p + ':')
style = wx.ALIGN_CENTER
if isinstance(self.parameters[p], Entry):
style |= wx.FIXED_MINSIZE
self.sz.Add(st, (i, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
self.sz.Add(self.parameters[p], (i, 1), (1, 1), style)
self.sz.AddGrowableRow(i)
self.parameters[p].Enable(False)
self.sz.AddGrowableCol(1)
def createSimulatedTargetLoopBoxSizer(self):
sbsim = wx.StaticBox(self, -1, 'Simulated Target Loop')
sbszsim = wx.StaticBoxSizer(sbsim, wx.VERTICAL)
# simulate loop settings
self.widgets['wait time'] = FloatEntry(self, -1, min=0.0, chars=6)
self.widgets['iterations'] = IntEntry(self, -1, min=0.0, chars=6)
szwaittime = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Wait Time:')
szwaittime.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szwaittime.Add(self.widgets['wait time'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'seconds')
szwaittime.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sziterations = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Iterations:')
sziterations.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sziterations.Add(self.widgets['iterations'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
# simluate target loop
szsim = wx.GridBagSizer(5, 5)
szsim.Add(szwaittime, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szsim.Add(sziterations, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszsim.Add(szsim, 0, wx.ALIGN_CENTER)
return sbszsim
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Transform Management')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['min mag'] = IntEntry(self, -1, min=1, chars=9)
#self.instrumentselection = leginon.gui.wx.Instrument.SelectionPanel(self, passive=True)
#self.panel.setInstrumentSelection(self.instrumentselection)
#self.widgets['camera settings'] = leginon.gui.wx.Camera.CameraPanel(self)
#self.widgets['camera settings'].setSize(self.node.instrument.camerasize)
regtypes = self.node.getRegistrationTypes()
self.widgets['registration'] = Choice(self, -1, choices=regtypes)
szminmag = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Minimum Magnification')
szminmag.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szminmag.Add(self.widgets['min mag'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Register images using')
szminmag.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szminmag.Add(self.widgets['registration'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
sz = wx.GridBagSizer(5, 10)
sz.Add(szminmag, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
#sz.Add(self.instrumentselection, (1, 0), (1, 1), wx.EXPAND)
#sz.Add(self.widgets['camera settings'], (2, 0), (1, 1), wx.EXPAND)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return [sbsz]
def initialize(self):
tfsd = leginon.gui.wx.TargetFinder.ScrolledSettings.initialize(self)
if self.show_basic:
return tfsd
else:
sb = wx.StaticBox(self, -1, 'Hole Finder Settings')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['skip'] = wx.CheckBox(self, -1,
'Skip automated hole finder')
self.widgets['focus interval'] = IntEntry(self, -1, chars=6)
sz = wx.GridBagSizer(5, 5)
sz.Add(self.widgets['skip'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Focus every')
sz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(
self.widgets['focus interval'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'image')
sz.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return tfsd + [sbsz]
def __init__(self, parent):
WizardPage.__init__(self, parent)
self.pagesizer = wx.GridBagSizer()
self.sizer = wx.GridBagSizer()
self.sizer.Add(
wx.StaticText(
self, -1, '''Enter illumination limiting aperture size
(likely C2) you will use at high magnification imaging
if you would like to see its imprint when targeting'''), (0, 0), (1, 1))
c2sizer = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'C2 size: ')
c2sizer.Add(label, (0, 0), (1, 1), wx.ALIGN_LEFT)
self.c2sizectrl = IntEntry(self, -1, chars=6, value='100')
c2sizer.Add(self.c2sizectrl, (0, 1), (1, 1), wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'um')
c2sizer.Add(label, (0, 2), (1, 1), wx.ALIGN_LEFT)
self.sizer.Add(c2sizer, (2, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
self.sizer.AddGrowableCol(0)
self.pagesizer.Add(self.sizer, (0, 0), (1, 1), wx.ALIGN_CENTER)
self.pagesizer.AddGrowableRow(0)
self.pagesizer.AddGrowableCol(0)
self.SetSizerAndFit(self.pagesizer)
def __init__(self, parent):
self.node = parent.node
wx.Dialog.__init__(self, parent, -1, 'Test Reproducibiltiy')
self.measure = wx.Button(self, -1, 'Run')
self.Bind(wx.EVT_BUTTON, self.onMeasureButton, self.measure)
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.measure, (0, 0), (1, 1), wx.EXPAND)
sbsz = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Label:')
self.labvalue = Entry(self, -1, chars=20, value='test1')
sbsz.Add(label, (0, 0), (1, 1))
sbsz.Add(self.labvalue, (0, 1), (1, 1))
label = wx.StaticText(self, -1, 'Moves:')
self.movesvalue = IntEntry(self,
-1,
allownone=False,
chars=5,
value='10')
sbsz.Add(label, (1, 0), (1, 1))
sbsz.Add(self.movesvalue, (1, 1), (1, 1))
label = wx.StaticText(self, -1, 'Distance:')
self.distvalue = FloatEntry(self,
-1,
allownone=False,
chars=5,
value='1e-5')
sbsz.Add(label, (2, 0), (1, 1))
sbsz.Add(self.distvalue, (2, 1), (1, 1))
label = wx.StaticText(self, -1, 'Angle:')
self.angvalue = FloatEntry(self, -1, allownone=True, chars=5, value='')
sbsz.Add(label, (3, 0), (1, 1))
sbsz.Add(self.angvalue, (3, 1), (1, 1))
self.sizer = wx.GridBagSizer(5, 5)
self.sizer.Add(sbsz, (0, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
self.sizer.Add(self.measure, (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.ALL, 10)
self.SetSizerAndFit(self.sizer)
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Target Filter')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
targettypes = ['acquisition', 'focus', 'preview']
self.widgets['bypass'] = wx.CheckBox(self, -1, 'Bypass Filter')
self.widgets['target type'] = wx.Choice(self, -1, choices=targettypes)
self.widgets['user check'] = wx.CheckBox(
self, -1, 'Verify filter before submitting')
self.widgets['square length'] = IntEntry(self, -1, min=0, chars=6)
self.widgets['bright number'] = IntEntry(self, -1, min=0, chars=6)
self.widgets['dark number'] = IntEntry(self, -1, min=0, chars=6)
self.widgets['median number'] = IntEntry(self, -1, min=0, chars=6)
sz = wx.GridBagSizer(5, 10)
## filter
sz.Add(self.widgets['bypass'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Filtering Target Type')
sz.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['target type'], (0, 2), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['user check'], (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz.AddGrowableCol(0)
label = wx.StaticText(
self, -1, 'length of the square to consider intensity stats:')
sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['square length'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'number of brightest targets:')
sz.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['bright number'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'number of darkest targets:')
sz.Add(label, (4, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['dark number'], (4, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'number of closest-to-median targets:')
sz.Add(label, (5, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['median number'], (5, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return [sbsz]
def __init__(self, parent, title, ring=None):
wx.Dialog.__init__(self, parent, -1, title)
sbszring = wx.StaticBoxSizer(wx.StaticBox(self, -1, 'Ring'),
wx.VERTICAL)
self.ieinside = IntEntry(self, -1, min=0, chars=4)
self.ieoutside = IntEntry(self, -1, min=0, chars=4)
if ring is not None:
if not parent.validate(ring):
raise ValueError
inside, outside = ring
self.ieinside.SetValue(inside)
self.ieoutside.SetValue(outside)
szring = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Inside')
szring.Add(label, (0, 1), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'Outside')
szring.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER)
label = wx.StaticText(self, -1, 'Diameter')
szring.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szring.Add(self.ieinside, (1, 1), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
szring.Add(self.ieoutside, (1, 2), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'pixels')
szring.Add(label, (1, 3), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbszring.Add(szring, 1, wx.EXPAND | wx.ALL, 5)
self.bok = wx.Button(self, wx.ID_OK, 'OK')
self.bcancel = wx.Button(self, wx.ID_CANCEL, 'Cancel')
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.bok, (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
szbutton.Add(self.bcancel, (0, 1), (1, 1), wx.ALIGN_CENTER)
szbutton.AddGrowableCol(0)
sz = wx.GridBagSizer(5, 5)
sz.Add(sbszring, (0, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
sz.Add(szbutton, (1, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
self.SetSizerAndFit(sz)
self.Bind(wx.EVT_BUTTON, self.onOK, self.bok)
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Image-Shift Coma Calibration')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['imageshift coma tilt'] = FloatEntry(self, -1, chars=9)
self.widgets['imageshift coma step'] = FloatEntry(self, -1, chars=9)
self.widgets['imageshift coma number'] = IntEntry(self,
-1,
min=1,
chars=2)
self.widgets['imageshift coma repeat'] = IntEntry(self,
-1,
min=1,
chars=2)
sz = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Coma measurement beam tilt (+/-)')
sz.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['imageshift coma tilt'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Measure coma at')
sz.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['imageshift coma number'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'positions per image shift direction')
sz.Add(label, (1, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'Add additional')
sz.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['imageshift coma step'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'm image shift at each position')
sz.Add(label, (2, 2), (1, 1), wx.ALIGN_LEFT)
label = wx.StaticText(self, -1, 'Repeat coma measurement')
sz.Add(label, (3, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(self.widgets['imageshift coma repeat'], (3, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'times')
sz.Add(label, (3, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sbsz.Add(sz, 0, wx.ALIGN_CENTER | wx.ALL, 5)
return [sbsz]
def __init__(self, parent):
self.parent = parent
self.theta = self.parent.data['theta']
wx.Dialog.__init__(self, self.parent.frame, -1, "Measure Tilt Angle, Theta")
inforow = wx.FlexGridSizer(3, 3, 15, 15)
thetastr = ("****** %3.3f ******" % self.theta)
label = wx.StaticText(self, -1, "Current tilt angle: ",
style=wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
self.tiltvalue = wx.StaticText(self, -1, thetastr, style=wx.ALIGN_CENTER|wx.ALIGN_CENTER_VERTICAL)
#self.tiltvalue = FloatEntry(self, -1, allownone=True, chars=5, value=thetastr)
label3 = wx.StaticText(self, -1, "degrees", style=wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
inforow.Add(label, 0, wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
inforow.Add(self.tiltvalue, 0, wx.ALIGN_CENTER_HORIZONTAL|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 3)
inforow.Add(label3, 0, wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 3)
arealimstr = str(int(self.parent.data['arealim']))
label = wx.StaticText(self, -1, "Minimum Triangle Area: ",
style=wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
self.arealimit = IntEntry(self, -1, allownone=False, chars=8, value=arealimstr)
label2 = wx.StaticText(self, -1, "square pixels", style=wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
inforow.Add(label, 0, wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
inforow.Add(self.arealimit, 0, wx.ALIGN_CENTER_HORIZONTAL|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 3)
inforow.Add(label2, 0, wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 3)
label = wx.StaticText(self, -1, "Triangles Used: ", style=wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
self.trilabel1 = wx.StaticText(self, -1, " ", style=wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
self.trilabel2 = wx.StaticText(self, -1, " ", style=wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL)
inforow.Add(label, 0, wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 3)
inforow.Add(self.trilabel1, 0, wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 3)
inforow.Add(self.trilabel2, 0, wx.ALIGN_LEFT|wx.ALIGN_CENTER_VERTICAL|wx.ALL, 3)
self.canceltiltang = wx.Button(self, wx.ID_CANCEL, '&Cancel')
self.applytiltang = wx.Button(self, wx.ID_APPLY, '&Apply')
self.runtiltang = wx.Button(self, -1, '&Run')
self.Bind(wx.EVT_BUTTON, self.onRunTiltAng, self.runtiltang)
self.Bind(wx.EVT_BUTTON, self.onApplyTiltAng, self.applytiltang)
buttonrow = wx.GridSizer(1,3)
buttonrow.Add(self.canceltiltang, 0, wx.ALIGN_CENTER_HORIZONTAL|wx.ALIGN_CENTER_VERTICAL, 0)
buttonrow.Add(self.applytiltang, 0, wx.ALIGN_CENTER_HORIZONTAL|wx.ALIGN_CENTER_VERTICAL, 0)
buttonrow.Add(self.runtiltang, 0, wx.ALIGN_CENTER_HORIZONTAL|wx.ALIGN_CENTER_VERTICAL, 0)
self.sizer = wx.FlexGridSizer(2,1)
self.sizer.Add(inforow, 0, wx.EXPAND|wx.ALL, 10)
self.sizer.Add(buttonrow, 0, wx.EXPAND|wx.ALL, 5)
self.SetSizerAndFit(self.sizer)
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Raptor Settings')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['process'] = wx.CheckBox(self, -1,
'Process images when event received')
self.widgets['path'] = Entry(self, -1)
self.widgets['time'] = IntEntry(self, -1)
self.widgets['binning'] = IntEntry(self, -1)
sbsz.Add(self.widgets['process'])
sbsz.Add(self.widgets['path'])
sbsz.Add(self.widgets['time'])
sbsz.Add(self.widgets['binning'])
return [sbsz]
def createTemplateDiameterEntry(self, sz, start_position):
self.widgets['template diameter'] = IntEntry(self, -1, chars=4)
label = wx.StaticText(self, -1, 'Final Template Diameter')
# add to main
newrow, newcol = self.addToSizer(sz, label, start_position, (1, 1))
return self.addToSizer(sz, self.widgets['template diameter'],
(start_position[0], newcol), (1, 1),
wx.ALIGN_CENTER | wx.FIXED_MINSIZE)
def initialize(self):
leginon.gui.wx.Settings.ScrolledDialog.initialize(self)
sb = wx.StaticBox(self, -1, 'Mosaics')
sbsz = wx.StaticBoxSizer(sb, wx.VERTICAL)
choices = self.node.calclients.keys()
self.widgets['calibration parameter'] = Choice(self,
-1,
choices=choices)
self.widgets['scale image'] = wx.CheckBox(self, -1, 'Scale image to')
self.widgets['scale size'] = IntEntry(self, -1, min=1, chars=4)
self.widgets['create on tile change'] = Choice(
self, -1, choices=['all', 'final', 'none'])
self.bcreate = wx.Button(self, -1, 'Create')
self.bsave = wx.Button(self, -1, 'Save')
szp = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Calibration parameter')
szp.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szp.Add(self.widgets['calibration parameter'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szs = wx.GridBagSizer(5, 5)
szs.Add(self.widgets['scale image'], (0, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
szs.Add(self.widgets['scale size'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'pixels in largest dimension')
szs.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szb = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Mosaic image:')
szb.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szb.Add(self.bcreate, (0, 1), (1, 1), wx.ALIGN_CENTER)
szb.Add(self.bsave, (0, 2), (1, 1), wx.ALIGN_CENTER)
szc = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Auto create mosaic for new tiles')
szc.Add(label, (0, 0), (1, 1))
szc.Add(self.widgets['create on tile change'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
sz = wx.GridBagSizer(5, 5)
sz.Add(szp, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(szs, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(szc, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz.Add(szb, (3, 0), (1, 1), wx.ALIGN_CENTER)
sbsz.Add(sz, 1, wx.EXPAND | wx.ALL, 5)
self.bcreate.Enable(self.node.mosaic.hasTiles())
self.bsave.Enable(self.node.hasMosaicImage())
self.Bind(wx.EVT_BUTTON, self.onCreateButton, self.bcreate)
self.Bind(wx.EVT_BUTTON, self.onSaveButton, self.bsave)
return [sbsz]
class ReproTestDialog(wx.Dialog):
def __init__(self, parent):
self.node = parent.node
wx.Dialog.__init__(self, parent, -1, 'Test Reproducibiltiy')
self.measure = wx.Button(self, -1, 'Run')
self.Bind(wx.EVT_BUTTON, self.onMeasureButton, self.measure)
szbutton = wx.GridBagSizer(5, 5)
szbutton.Add(self.measure, (0, 0), (1, 1), wx.EXPAND)
sbsz = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Label:')
self.labvalue = Entry(self, -1, chars=20, value='test1')
sbsz.Add(label, (0, 0), (1, 1))
sbsz.Add(self.labvalue, (0, 1), (1, 1))
label = wx.StaticText(self, -1, 'Moves:')
self.movesvalue = IntEntry(self,
-1,
allownone=False,
chars=5,
value='10')
sbsz.Add(label, (1, 0), (1, 1))
sbsz.Add(self.movesvalue, (1, 1), (1, 1))
label = wx.StaticText(self, -1, 'Distance:')
self.distvalue = FloatEntry(self,
-1,
allownone=False,
chars=5,
value='1e-5')
sbsz.Add(label, (2, 0), (1, 1))
sbsz.Add(self.distvalue, (2, 1), (1, 1))
label = wx.StaticText(self, -1, 'Angle:')
self.angvalue = FloatEntry(self, -1, allownone=True, chars=5, value='')
sbsz.Add(label, (3, 0), (1, 1))
sbsz.Add(self.angvalue, (3, 1), (1, 1))
self.sizer = wx.GridBagSizer(5, 5)
self.sizer.Add(sbsz, (0, 0), (1, 1), wx.EXPAND | wx.ALL, 10)
self.sizer.Add(self.measure, (1, 0), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.ALL, 10)
self.SetSizerAndFit(self.sizer)
def onMeasureButton(self, evt):
self.Close()
label = self.labvalue.GetValue()
moves = self.movesvalue.GetValue()
distance = self.distvalue.GetValue()
angle = self.angvalue.GetValue()
threading.Thread(target=self.node.move_away_move_back,
args=(label, moves, distance, angle)).start()
def addBasicGonModelerSettings(self):
sb = wx.StaticBox(self, -1, 'Measurement')
sbszmeasure = wx.StaticBoxSizer(sb, wx.VERTICAL)
sb = wx.StaticBox(self, -1, 'Modeling')
sbszmodel = wx.StaticBoxSizer(sb, wx.VERTICAL)
self.widgets['measure axis'] = Choice(self, -1, choices=self.node.axes)
self.widgets['measure points'] = IntEntry(self, -1, min=2, chars=5)
self.widgets['measure interval'] = FloatEntry(self, -1, chars=9)
self.widgets['model mag only'] = wx.CheckBox(
self, -1, 'Scale and Rotation Adjustment Only')
self.widgets['model terms'] = IntEntry(self, -1, chars=2)
szmeasure = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Axis:')
szmeasure.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmeasure.Add(self.widgets['measure axis'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT)
label = wx.StaticText(self, -1, 'Points:')
szmeasure.Add(label, (1, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmeasure.Add(
self.widgets['measure points'], (1, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.FIXED_MINSIZE)
label = wx.StaticText(self, -1, 'Interval')
szmeasure.Add(label, (2, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmeasure.Add(
self.widgets['measure interval'], (2, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.FIXED_MINSIZE)
sbszmeasure.Add(szmeasure, 1, wx.EXPAND | wx.ALL, 5)
szmodel = wx.GridBagSizer(5, 5)
label = wx.StaticText(self, -1, 'Terms:')
szmodel.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
szmodel.Add(
self.widgets['model terms'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL | wx.ALIGN_RIGHT | wx.FIXED_MINSIZE)
szmodel.Add(self.widgets['model mag only'], (1, 0), (1, 2),
wx.ALIGN_CENTER)
szmodel.AddGrowableCol(1)
sbszmodel.Add(szmodel, 1, wx.EXPAND | wx.ALL, 5)
return [sbszmeasure, sbszmodel]
def createRepeatTimeEntry(self, start_position):
sz_time = wx.GridBagSizer(1, 4)
label1 = wx.StaticText(self, -1, 'Wait for at least')
self.widgets['repeat time'] = IntEntry(self, -1, chars=6, min=0)
label2 = wx.StaticText(self, -1, 'seconds before fixing condition')
sz_time.Add(label1, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz_time.Add(self.widgets['repeat time'], (0, 1), (1, 1), wx.EXPAND)
sz_time.Add(label2, (0, 2), (1, 2),
wx.ALIGN_CENTER_VERTICAL | wx.EXPAND)
self.sz.Add(sz_time, start_position, (1, 2), wx.ALIGN_LEFT | wx.ALL)
def createBadRecheckSizer(self):
# recheck
self.widgets['recheck pause time'] = IntEntry(self, -1, chars=8)
sz_recheck = wx.GridBagSizer(0, 0)
label = wx.StaticText(self, -1, 'Wait for')
sz_recheck.Add(label, (0, 0), (1, 1), wx.ALIGN_CENTER_VERTICAL)
sz_recheck.Add(self.widgets['recheck pause time'], (0, 1), (1, 1),
wx.ALIGN_CENTER_VERTICAL)
label = wx.StaticText(self, -1, 'second if recheck')
sz_recheck.Add(label, (0, 2), (1, 1), wx.ALIGN_CENTER_VERTICAL)
return sz_recheck
