def importMosaicTiles(self):
source_session = self.getSourceSession()
print "Importing mosaic tiles...."
sinedon.setConfig('leginondata', db=self.source_dbname)
q = leginondata.MosaicTileData(session=source_session)
results = self.research(q)
self.publish(results)
def processImageData(self, imagedata):
'''
different from ClickTargetFinder because findTargets is
not per image, instead we have submitTargets.
Each new image becomes a tile in a mosaic.
'''
self.logger.info('Processing inbound image data')
### create a new imagelist if not already done
targets = imagedata['target']['list']
if not targets:
self.logger.info('No targets to process')
return
imagelist = self.getMosaicImageList(targets)
self.logger.debug('creating MosaicTileData for image %d' %
(imagedata.dbid, ))
tiledata = leginondata.MosaicTileData(image=imagedata,
list=imagelist,
session=self.session)
self.logger.debug('publishing MosaicTileData')
self.publish(tiledata, database=True)
self.setMosaicNameFromImageList(imagelist)
self.logger.debug('published MosaicTileData')
self.addTile(imagedata)
if self.settings['create on tile change'] == 'all':
self.logger.debug('create all')
self.createMosaicImage()
self.logger.debug('done create all')
self.logger.debug('Image data processed')
def queryAtlases(self):
querydata = leginondata.MosaicTileData(session=self.session)
tiledatalist = self.research(datainstance=querydata)
imagedatarefs = {}
for tiledata in tiledatalist:
imagedataref = tiledata.special_getitem('image', dereference=False)
if tiledata['list'].dbid in imagedatarefs:
imagedatarefs[tiledata['list'].dbid].append(imagedataref)
else:
imagedatarefs[tiledata['list'].dbid] = [imagedataref]
return imagedatarefs
def researchMosaicTileData(self):
tilequery = leginondata.MosaicTileData(
session=self.session, list=leginondata.ImageListData())
mosaictiles = self.research(datainstance=tilequery)
mosaiclists = ordereddict.OrderedDict()
for tile in mosaictiles:
list = tile['list']
label = '(no label)'
if list['targets'] is not None:
if list['targets']['label']:
label = list['targets']['label']
key = '%s: %s' % (list.dbid, label)
if key not in mosaiclists:
mosaiclists[key] = []
mosaiclists[key].append(tile)
self.mosaicselectionmapping = mosaiclists
return mosaiclists