def main():
args = parser.parse_args()
# Parsing arguments
mode = "logging." + args.mode
# Setting logging preferences
logger = logging.getLogger(__name__)
logger.setLevel(eval(mode))
# Setting the level of the loggers in lib
# setToolsLoggerLevel(mode)
# Check if path is absolute, if not the program use the current working path
cond_files = create_path(args.conds)
expr_files = create_path(args.tpms)
ioe_fl = create_path(args.iox)
# Check extension of input file
id_type = ioe_fl[0].split(".")[-1].strip("\n")
if id_type != "ioe" and id_type != "ioi":
logger.info(
"Invalid input file. Input file has to be either IOE or IOI format "
"it must present the appropriate suffix.")
exit(1)
#multiple_conditions_analysis(args.method, cond_files, expr_files, ioe_fl[0], args.area[0], args.lower_bound[0],
# args.paired, args.gene_cor, args.alpha[0], args.output)
multiple_conditions_analysis(args.method, cond_files, expr_files,
ioe_fl[0], args.area[0], args.lower_bound[0],
args.paired, args.gene_cor, args.alpha[0],
args.save_tpm_events, args.seq, args.median,
args.tpm_th[0], args.nan_th[0], args.output)
def main():
args = parser.parse_args()
# Check if path is absolute, if not the program use the current working path
cond_files = create_path(args.conds)
expr_files = create_path(args.tpms)
ioe_fl = create_path(args.ioe)
multiple_conditions_analysis(args.method, cond_files, expr_files,
ioe_fl[0], args.area[0], args.lower_bound[0],
args.paired, args.gene_cor, args.alpha[0],
args.save_tpm_events, args.output)