Exemple #1
0
def clean_enhc(iter_index):
    iter_name = make_iter_name (iter_index)
    work_path = iter_name + "/" + enhc_name + "/"  

    all_task = glob.glob(work_path + "/[0-9]*[0-9]")
    all_task.sort()

    cleaned_files = ['state*.cpt', '*log', 'traj.trr', 'topol.tpr', 'ener.edr', 'mdout.mdp']
    cwd = os.getcwd()
    for ii in all_task :
        os.chdir(ii)
        clean_files(cleaned_files)
        os.chdir(cwd)
Exemple #2
0
def clean_enhc(iter_index):
    iter_name = make_iter_name(iter_index)
    work_path = iter_name + "/" + enhc_name + "/"

    all_task = glob.glob(work_path + "/[0-9]*[0-9]")
    all_task.sort()
    all_task += glob.glob(work_path + "/*_job_id")
    all_task += glob.glob(work_path + "/*_finished")
    all_task += glob.glob(work_path + "/*.sub")
    all_task += glob.glob(work_path + "/*.json")
    all_task += glob.glob(work_path + "/*.sub.o*")

    cleaned_files = [
        'state*.cpt', '*log', 'traj.trr', 'topol.tpr', 'ener.edr', 'mdout.mdp'
    ]
    cwd = os.getcwd()
    for ii in all_task:
        if os.path.isdir(ii):
            os.chdir(ii)
            clean_files(cleaned_files)
            os.chdir(cwd)
        elif os.path.isfile(ii):
            os.remove(ii)
    print('enhanc clean done')