def frame_order_ave_pos(root=None, path=None):
"""Display the PDB structure for the frame order average domain position.
@keyword root: The file root of the PDB file containing the frame order average structure.
@type root: str
"""
# Find all PDB files.
pdb_files = find_pdb_files(path=path, file_root=root)
pdb_files += find_pdb_files(path=path, file_root=root+'_sim')
# Read in the PDB files.
for file in pdb_files:
pymol_obj.exec_cmd("load " + file)
# The object ID.
id = file_root(file)
# Disable the MC simulation representation - the user can find this out for themselves.
pymol_obj.exec_cmd("disable %s_sim" % root)
def frame_order_ave_pos(root=None, path=None):
"""Display the PDB structure for the frame order average domain position.
@keyword root: The file root of the PDB file containing the frame order average structure.
@type root: str
"""
# Find all PDB files.
pdb_files = find_pdb_files(path=path, file_root=root)
pdb_files += find_pdb_files(path=path, file_root=root + '_sim')
# Read in the PDB files.
for file in pdb_files:
pymol_obj.exec_cmd("load " + file)
# The object ID.
id = file_root(file)
# Disable the MC simulation representation - the user can find this out for themselves.
pymol_obj.exec_cmd("disable %s_sim" % root)
def frame_order_sim(file=None, path=None):
"""Display the PDB structure for the frame order Brownian simulation.
@keyword root: The full Brownian diffusion file name.
@type root: str
"""
# Find all PDB files.
pdb_files = find_pdb_files(path=path, file_root=file)
# Read in the PDB files.
for file in pdb_files:
pymol_obj.exec_cmd("load " + file)
def frame_order_sim(file=None, path=None):
"""Display the PDB structure for the frame order Brownian simulation.
@keyword root: The full Brownian diffusion file name.
@type root: str
"""
# Find all PDB files.
pdb_files = find_pdb_files(path=path, file_root=file)
# Read in the PDB files.
for file in pdb_files:
pymol_obj.exec_cmd("load " + file)
def frame_order_geometric(root=None, path=None):
"""Display the frame order geometric object.
@keyword root: The file root of the PDB file containing the frame order geometric object.
@type root: str
"""
# Find all PDB files.
pdb_files = find_pdb_files(path=path, file_root=root)
pdb_files += find_pdb_files(path=path, file_root=root+'_A')
pdb_files += find_pdb_files(path=path, file_root=root+'_B')
pdb_files += find_pdb_files(path=path, file_root=root+'_sim')
pdb_files += find_pdb_files(path=path, file_root=root+'_sim_A')
pdb_files += find_pdb_files(path=path, file_root=root+'_sim_B')
# Read in the PDB files.
for file in pdb_files:
# Read in the PDB file.
pymol_obj.exec_cmd("load " + file)
# The object ID.
id = file_root(file)
# First hide everything.
pymol_obj.exec_cmd("select %s" % id)
pymol_obj.exec_cmd("hide ('sele')")
pymol_obj.exec_cmd("cmd.delete('sele')")
# Set up the titles.
represent_titles(id=id)
# Set up the pivot points.
represent_pivots(id=id)
# Set up the rotor objects.
represent_rotor_object(id=id)
# Set up the cone axis.
represent_cone_axis(id=id)
# Set up the cone object.
represent_cone_object(id=id)
# Disable the MC simulation representation - the user can find this out for themselves.
pymol_obj.exec_cmd("disable %s_sim" % root)
pymol_obj.exec_cmd("disable %s_sim_A" % root)
pymol_obj.exec_cmd("disable %s_sim_B" % root)
def frame_order_geometric(root=None, path=None):
"""Display the frame order geometric object.
@keyword root: The file root of the PDB file containing the frame order geometric object.
@type root: str
"""
# Find all PDB files.
pdb_files = find_pdb_files(path=path, file_root=root)
pdb_files += find_pdb_files(path=path, file_root=root + '_A')
pdb_files += find_pdb_files(path=path, file_root=root + '_B')
pdb_files += find_pdb_files(path=path, file_root=root + '_sim')
pdb_files += find_pdb_files(path=path, file_root=root + '_sim_A')
pdb_files += find_pdb_files(path=path, file_root=root + '_sim_B')
# Read in the PDB files.
for file in pdb_files:
# Read in the PDB file.
pymol_obj.exec_cmd("load " + file)
# The object ID.
id = file_root(file)
# First hide everything.
pymol_obj.exec_cmd("select %s" % id)
pymol_obj.exec_cmd("hide ('sele')")
pymol_obj.exec_cmd("cmd.delete('sele')")
# Set up the titles.
represent_titles(id=id)
# Set up the pivot points.
represent_pivots(id=id)
# Set up the rotor objects.
represent_rotor_object(id=id)
# Set up the cone axis.
represent_cone_axis(id=id)
# Set up the cone object.
represent_cone_object(id=id)
# Disable the MC simulation representation - the user can find this out for themselves.
pymol_obj.exec_cmd("disable %s_sim" % root)
pymol_obj.exec_cmd("disable %s_sim_A" % root)
pymol_obj.exec_cmd("disable %s_sim_B" % root)
