def _compile_cpp_file(self, setup_dir):
src_file = os.path.join(setup_dir, self.release_file_name)
rc = util.compile_cpp_file(self.name, setup_dir, src_file,
self.exe_name, self.cpp_compile_opts)
if rc != 0:
self.log.error('Problem compiling %s.' % self.name)
return 1
else:
self.log.info('Successfully compiled %s.' % self.name)
return self._copy_dir(setup_dir)
def _compile_cpp_file(self, setup_dir):
src_file = os.path.join(setup_dir, self.release_file_name)
rc = util.compile_cpp_file(self.name,
setup_dir,
src_file,
self.exe_name,
self.cpp_compile_opts)
if rc != 0:
self.log.error('Problem compiling %s.' % self.name)
return 1
else:
self.log.info('Successfully compiled %s.' % self.name)
return self._copy_dir(setup_dir)
def deploy_dotur(app, setup_dir):
# a hack to fix headers for gcc 4.3+
richFile = os.path.join(setup_dir, 'richness.h')
fileH = open(richFile, 'r')
fileC = fileH.readlines()
fileH.close()
fileH = open(richFile, 'w')
fileH.write('#include <cstdlib>\n')
for line in fileC:
fileH.write(line)
fileH.close()
otuFile = os.path.join(setup_dir, 'otu.h')
fileH = open(otuFile, 'r')
fileC = fileH.readlines()
fileH.close()
fileH = open(otuFile, 'w')
fileH.write('#include <cstdlib>\n#include <algorithm>\n')
for line in fileC:
fileH.write(line)
fileH.close()
doturFile = os.path.join(setup_dir, 'dotur.C')
fileH = open(doturFile, 'r')
fileC = fileH.readlines()
fileH.close()
fileH = open(doturFile, 'w')
fileH.write('#include <cstring>\n')
for line in fileC:
fileH.write(line)
fileH.close()
srcFile = 'dotur.C'
srcFile = os.path.join(setup_dir, srcFile)
if app.exe_name:
exeFile = app.exe_name
else:
exeFile = 'dotur'
exeFile = os.path.join(setup_dir, exeFile)
rc = util.compile_cpp_file('dotur', setup_dir, srcFile, exeFile)
if rc != 0:
return rc
os.rmdir(app.deploy_dir)
return util.copytree(setup_dir, app.deploy_dir)