def test_UnitDefinition_getUnit(self):
mole = libsbml.Unit(2,4)
litre = libsbml.Unit(2,4)
second = libsbml.Unit(2,4)
mole.setKind(libsbml.UnitKind_forName("mole"))
litre.setKind(libsbml.UnitKind_forName("litre"))
second.setKind(libsbml.UnitKind_forName("second"))
mole.setScale(-3)
litre.setExponent(-1)
second.setExponent(-1)
self.UD.addUnit(mole)
self.UD.addUnit(litre)
self.UD.addUnit(second)
_dummyList = [ mole ]; _dummyList[:] = []; del _dummyList
_dummyList = [ litre ]; _dummyList[:] = []; del _dummyList
_dummyList = [ second ]; _dummyList[:] = []; del _dummyList
self.assert_( self.UD.getNumUnits() == 3 )
mole = self.UD.getUnit(0)
litre = self.UD.getUnit(1)
second = self.UD.getUnit(2)
self.assert_( mole.getKind() == libsbml.UNIT_KIND_MOLE )
self.assert_( litre.getKind() == libsbml.UNIT_KIND_LITRE )
self.assert_( second.getKind() == libsbml.UNIT_KIND_SECOND )
self.assert_( mole.getScale() == -3 )
self.assert_( litre.getExponent() == -1 )
self.assert_( second.getExponent() == -1 )
pass
def test_Unit_copyConstructor(self): o1 = libsbml.Unit(2,4) o1.setKind(libsbml.UNIT_KIND_MOLE) self.assert_( o1.getKind() == libsbml.UNIT_KIND_MOLE ) o2 = libsbml.Unit(o1) self.assert_( o2.getKind() == libsbml.UNIT_KIND_MOLE ) self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass
def test_Unit_assignmentOperator(self): o1 = libsbml.Unit(2,4) o1.setKind(libsbml.UNIT_KIND_MOLE) self.assert_( o1.getKind() == libsbml.UNIT_KIND_MOLE ) o2 = libsbml.Unit(2,4) o2 = o1 self.assert_( o2.getKind() == libsbml.UNIT_KIND_MOLE ) self.assert_( o2.getParentSBMLObject() == o1.getParentSBMLObject() ) o2 = None o1 = None pass
def test_UnitDefinition_isVariantOfSubstancePerTime_3(self):
ud = libsbml.UnitDefinition(2,2)
dim = libsbml.Unit(2,2)
dim.setKind(libsbml.UnitKind_forName("dimensionless"))
perTime = ud.createUnit()
perTime.setKind(libsbml.UnitKind_forName("second"))
perTime.setExponent(-1)
u = ud.createUnit()
self.assertEqual( False, ud.isVariantOfSubstancePerTime() )
u.setKind(libsbml.UNIT_KIND_GRAM)
u.setExponent(1)
self.assertEqual( True, ud.isVariantOfSubstancePerTime() )
u.setScale(-1)
perTime.setScale(-1)
self.assertEqual( True, ud.isVariantOfSubstancePerTime() )
u.setMultiplier(2)
self.assertEqual( True, ud.isVariantOfSubstancePerTime() )
u.setOffset(3)
self.assertEqual( True, ud.isVariantOfSubstancePerTime() )
u.setExponent(-3)
self.assertEqual( False, ud.isVariantOfSubstancePerTime() )
u.setExponent(1)
perTime.setExponent(-3)
self.assertEqual( False, ud.isVariantOfSubstancePerTime() )
perTime.setExponent(-1)
ud.addUnit(dim)
self.assertEqual( True, ud.isVariantOfSubstancePerTime() )
_dummyList = [ ud ]; _dummyList[:] = []; del _dummyList
_dummyList = [ dim ]; _dummyList[:] = []; del _dummyList
pass
def test_UnitDefinition_isVariantOfSubstancePerTime_2(self):
dim = libsbml.Unit(2, 4)
dim.setKind(libsbml.UnitKind_forName("dimensionless"))
perTime = self.UD.createUnit()
perTime.setKind(libsbml.UnitKind_forName("second"))
perTime.setExponent(-1)
u = self.UD.createUnit()
self.assertEqual(False, self.UD.isVariantOfSubstancePerTime())
u.setKind(libsbml.UNIT_KIND_ITEM)
u.setExponent(1)
self.assertEqual(True, self.UD.isVariantOfSubstancePerTime())
u.setScale(-1)
perTime.setScale(-1)
self.assertEqual(True, self.UD.isVariantOfSubstancePerTime())
u.setMultiplier(2)
self.assertEqual(True, self.UD.isVariantOfSubstancePerTime())
u.setOffset(3)
self.assertEqual(True, self.UD.isVariantOfSubstancePerTime())
u.setExponent(-3)
self.assertEqual(False, self.UD.isVariantOfSubstancePerTime())
u.setExponent(1)
perTime.setExponent(-3)
self.assertEqual(False, self.UD.isVariantOfSubstancePerTime())
perTime.setExponent(-1)
self.UD.addUnit(dim)
self.assertEqual(True, self.UD.isVariantOfSubstancePerTime())
_dummyList = [dim]
_dummyList[:] = []
del _dummyList
pass
def test_L3_Unit_createWithNS(self):
xmlns = libsbml.XMLNamespaces()
xmlns.add("http://www.sbml.org", "testsbml")
sbmlns = libsbml.SBMLNamespaces(3, 1)
sbmlns.addNamespaces(xmlns)
u = libsbml.Unit(sbmlns)
self.assert_(u.getTypeCode() == libsbml.SBML_UNIT)
self.assert_(u.getMetaId() == "")
self.assert_(u.getNotes() == None)
self.assert_(u.getAnnotation() == None)
self.assert_(u.getLevel() == 3)
self.assert_(u.getVersion() == 1)
self.assert_(u.getNamespaces() != None)
self.assert_(u.getNamespaces().getLength() == 2)
self.assert_(u.getKind() == libsbml.UNIT_KIND_INVALID)
self.assertEqual(True, isnan(u.getExponentAsDouble()))
self.assertEqual(True, isnan(u.getMultiplier()))
self.assertEqual(False, u.isSetKind())
self.assertEqual(False, u.isSetExponent())
self.assertEqual(False, u.isSetMultiplier())
self.assertEqual(False, u.isSetScale())
_dummyList = [u]
_dummyList[:] = []
del _dummyList
pass
def test_Unit(self):
u = libsbml.Unit(2, 4)
self.assertEqual(False, (u.hasRequiredAttributes()))
u.setKind(libsbml.UNIT_KIND_MOLE)
self.assertEqual(True, u.hasRequiredAttributes())
u = None
pass
def test_UnitDefinition_addUnit(self): u = libsbml.Unit(2,4) u.setKind(libsbml.UNIT_KIND_MOLE) self.UD.addUnit(u) self.assert_( self.UD.getNumUnits() == 1 ) _dummyList = [ u ]; _dummyList[:] = []; del _dummyList pass
def test_Unit_setMultiplier2(self):
c = libsbml.Unit(2, 2)
i = c.setMultiplier(4)
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(c.getMultiplier() == 4)
_dummyList = [c]
_dummyList[:] = []
del _dummyList
pass
def test_UnitDefinition_addUnit3(self): m = libsbml.UnitDefinition(2,2) p = libsbml.Unit(1,2) p.setKind(libsbml.UNIT_KIND_MOLE) i = m.addUnit(p) self.assert_( i == libsbml.LIBSBML_LEVEL_MISMATCH ) self.assert_( m.getNumUnits() == 0 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass
def test_Unit_parent_add(self):
ud = libsbml.UnitDefinition(2, 4)
u = libsbml.Unit(2, 4)
u.setKind(libsbml.UNIT_KIND_MOLE)
ud.addUnit(u)
u = None
self.assert_(ud.getNumUnits() == 1)
lo = ud.getListOfUnits()
self.assert_(lo == ud.getUnit(0).getParentSBMLObject())
self.assert_(ud == lo.getParentSBMLObject())
ud = None
pass
def test_UnitDefinition_addUnit1(self): m = libsbml.UnitDefinition(2,2) p = libsbml.Unit(2,2) i = m.addUnit(p) self.assert_( i == libsbml.LIBSBML_INVALID_OBJECT ) p.setKind(libsbml.UNIT_KIND_MOLE) i = m.addUnit(p) self.assert_( i == libsbml.LIBSBML_OPERATION_SUCCESS ) self.assert_( m.getNumUnits() == 1 ) _dummyList = [ p ]; _dummyList[:] = []; del _dummyList _dummyList = [ m ]; _dummyList[:] = []; del _dummyList pass
def test_L3_Unit_hasRequiredAttributes(self): u = libsbml.Unit(3,1) self.assertEqual( False, u.hasRequiredAttributes() ) u.setKind(libsbml.UNIT_KIND_MOLE) self.assertEqual( False, u.hasRequiredAttributes() ) u.setExponent(0) self.assertEqual( False, u.hasRequiredAttributes() ) u.setMultiplier(0.45) self.assertEqual( False, u.hasRequiredAttributes() ) u.setScale(2) self.assertEqual( True, u.hasRequiredAttributes() ) _dummyList = [ u ]; _dummyList[:] = []; del _dummyList pass
def test_internal_consistency_check_99905_unit(self):
d = libsbml.SBMLDocument(2,4)
u = libsbml.Unit(2,4)
d.setLevelAndVersion(2,2,False)
m = d.createModel()
ud = m.createUnitDefinition()
ud.setId("ud")
u.setKind(libsbml.UNIT_KIND_MOLE)
u.setSBOTerm(9)
ud.addUnit(u)
errors = d.checkInternalConsistency()
self.assert_( errors == 0 )
d = None
pass
def test_Unit_ancestor_add(self): ud = libsbml.UnitDefinition(2,4) u = libsbml.Unit(2,4) u.setKind(libsbml.UNIT_KIND_MOLE) ud.addUnit(u) u = None self.assert_( ud.getNumUnits() == 1 ) lo = ud.getListOfUnits() obj = ud.getUnit(0) self.assert_( obj.getAncestorOfType(libsbml.SBML_UNIT_DEFINITION) == ud ) self.assert_( obj.getAncestorOfType(libsbml.SBML_LIST_OF) == lo ) self.assert_( obj.getAncestorOfType(libsbml.SBML_DOCUMENT) == None ) self.assert_( obj.getAncestorOfType(libsbml.SBML_COMPARTMENT) == None ) ud = None pass
def test_Unit_createWithNS(self): xmlns = libsbml.XMLNamespaces() xmlns.add( "http://www.sbml.org", "testsbml") sbmlns = libsbml.SBMLNamespaces(2,1) sbmlns.addNamespaces(xmlns) object = libsbml.Unit(sbmlns) self.assert_( object.getTypeCode() == libsbml.SBML_UNIT ) self.assert_( object.getMetaId() == "" ) self.assert_( object.getNotes() == None ) self.assert_( object.getAnnotation() == None ) self.assert_( object.getLevel() == 2 ) self.assert_( object.getVersion() == 1 ) self.assert_( object.getNamespaces() != None ) self.assert_( object.getNamespaces().getLength() == 2 ) _dummyList = [ object ]; _dummyList[:] = []; del _dummyList pass
def test_internal_consistency_check_99924(self):
d = libsbml.SBMLDocument(2,4)
u = libsbml.Unit(2,4)
d.setLevelAndVersion(1,2,False)
m = d.createModel()
c = m.createCompartment()
c.setId("cc")
ud = m.createUnitDefinition()
ud.setId("ud")
u.setKind(libsbml.UNIT_KIND_MOLE)
u.setMultiplier(9)
ud.addUnit(u)
errors = d.checkInternalConsistency()
self.assert_( errors == 0 )
d = None
pass
def test_Unit_set_get(self): u = libsbml.Unit(2,4) self.assert_( u.getKind() == libsbml.UNIT_KIND_INVALID ) self.assert_( u.getExponent() == 1 ) self.assert_( u.getScale() == 0 ) self.assert_( u.getMultiplier() == 1.0 ) self.assertEqual( False, u.isSetKind() ) u.setKind(libsbml.UNIT_KIND_WATT) self.assert_( u.getKind() == libsbml.UNIT_KIND_WATT ) u.setExponent(3) self.assert_( u.getExponent() == 3 ) u.setScale(4) self.assert_( u.getScale() == 4 ) u.setMultiplier(3.2) self.assert_( u.getMultiplier() == 3.2 ) _dummyList = [ u ]; _dummyList[:] = []; del _dummyList pass
def test_UnitDefinition_isVariantOfSubstance_1(self):
dim = libsbml.Unit(2,4)
dim.setKind(libsbml.UnitKind_forName("dimensionless"))
u = self.UD.createUnit()
self.assertEqual( False, self.UD.isVariantOfSubstance() )
u.setKind(libsbml.UNIT_KIND_MOLE)
u.setExponent(1)
self.assertEqual( True, self.UD.isVariantOfSubstance() )
u.setScale(-1)
self.assertEqual( True, self.UD.isVariantOfSubstance() )
u.setMultiplier(2)
self.assertEqual( True, self.UD.isVariantOfSubstance() )
u.setOffset(3)
self.assertEqual( True, self.UD.isVariantOfSubstance() )
u.setExponent(-3)
self.assertEqual( False, self.UD.isVariantOfSubstance() )
u.setExponent(1)
self.UD.addUnit(dim)
self.assertEqual( True, self.UD.isVariantOfSubstance() )
pass
def test_SBMLDocument_setLevelAndVersion_Error(self):
d = libsbml.SBMLDocument()
d.setLevelAndVersion(2, 1, True)
m1 = libsbml.Model(2, 1)
u = libsbml.Unit(2, 1)
u.setKind(libsbml.UnitKind_forName("mole"))
u.setOffset(3.2)
ud = libsbml.UnitDefinition(2, 1)
ud.setId("ud")
ud.addUnit(u)
m1.addUnitDefinition(ud)
d.setModel(m1)
self.assert_(d.setLevelAndVersion(2, 2, True) == False)
self.assert_(d.setLevelAndVersion(2, 3, True) == False)
self.assert_(d.setLevelAndVersion(1, 2, True) == False)
self.assert_(d.setLevelAndVersion(1, 1, True) == False)
_dummyList = [d]
_dummyList[:] = []
del _dummyList
pass
def test_UnitDefinition_isVariantOfVolume_2(self):
dim = libsbml.Unit(2,4)
dim.setKind(libsbml.UnitKind_forName("dimensionless"))
u = self.UD.createUnit()
self.assertEqual( False, self.UD.isVariantOfVolume() )
u.setKind(libsbml.UNIT_KIND_METRE)
u.setExponent(3)
self.assertEqual( True, self.UD.isVariantOfVolume() )
u.setScale(100)
self.assertEqual( True, self.UD.isVariantOfVolume() )
u.setMultiplier(5)
self.assertEqual( True, self.UD.isVariantOfVolume() )
u.setOffset(-5)
self.assertEqual( True, self.UD.isVariantOfVolume() )
u.setExponent(2)
self.assertEqual( False, self.UD.isVariantOfVolume() )
u.setExponent(3)
self.UD.addUnit(dim)
self.assertEqual( True, self.UD.isVariantOfVolume() )
pass
def test_Unit_setOffset2(self):
U1 = libsbml.Unit(2, 1)
i = U1.setOffset(2.0)
self.assert_(i == libsbml.LIBSBML_OPERATION_SUCCESS)
self.assert_(U1.getOffset() == 2)
pass
def setUp(self):
self.U = libsbml.Unit(3,1)
if (self.U == None):
pass
pass
def test_Unit_constructor(self):
s = None
try:
s = libsbml.Unit(1, 1)
s = libsbml.Unit(1, 2)
s = libsbml.Unit(2, 1)
s = libsbml.Unit(2, 2)
s = libsbml.Unit(2, 3)
s = libsbml.Unit(2, 4)
s = libsbml.Unit(3, 1)
s = libsbml.Unit(self.SN11)
s = libsbml.Unit(self.SN12)
s = libsbml.Unit(self.SN21)
s = libsbml.Unit(self.SN22)
s = libsbml.Unit(self.SN23)
s = libsbml.Unit(self.SN24)
s = libsbml.Unit(self.SN31)
except ValueError:
inst = sys.exc_info()[1]
s = None
pass
self.assert_(s != None)
msg = ""
try:
s = libsbml.Unit(9, 9)
except ValueError:
inst = sys.exc_info()[1]
msg = inst.args[0]
pass
self.assertEqual(msg, self.ERR_MSG)
msg = ""
try:
s = libsbml.Unit(self.SN99)
except ValueError:
inst = sys.exc_info()[1]
msg = inst.args[0]
pass
self.assertEqual(msg, self.ERR_MSG)
def test_Unit(self): u = libsbml.Unit(2,4) self.assertEqual( True, u.hasRequiredElements() ) u = None pass