def _set_glyph_fields(self, obj: libsbml.SpeciesGlyph,
layout: libsbml.Layout,
model: libsbml.Model) -> None:
"""Set fields."""
super(SpeciesGlyph, self)._set_fields(obj, model)
obj.setSpeciesId(self.species)
bb = _create_bounding_box(
x=self.x,
y=self.y,
z=self.z,
width=self.width,
height=self.height,
depth=self.depth,
)
obj.setBoundingBox(bb)
# text glyph
t_glyph = layout.createTextGlyph()
t_glyph.setId(f"tglyph_{self.sid}")
t_glyph.setGraphicalObjectId(self.sid)
t_glyph.setText(self.text)
bb = _create_bounding_box(
x=self.x,
y=self.y,
z=self.z,
width=self.width,
height=self.height,
depth=self.depth,
)
t_glyph.setBoundingBox(bb)
def set_fields(self, obj: libsbml.SpeciesGlyph, layout: libsbml.Layout):
super(CompartmentGlyph, self).set_fields(obj)
obj.setCompartmentId(self.compartment)
bb = _create_bounding_box(
x=self.x,
y=self.y,
z=self.z,
width=self.width,
height=self.height,
depth=self.depth,
)
obj.setBoundingBox(bb)
# text glyph
t_glyph = layout.createTextGlyph()
t_glyph.setId("tglyph_{}".format(self.sid))
t_glyph.setGraphicalObjectId(self.sid)
t_glyph.setText(self.text)
bb = _create_bounding_box(
x=self.x,
y=self.y,
z=self.z,
width=self.width,
height=self.height,
dpeth=self.depth,
)
t_glyph.setBoundingBox(bb)
def set_fields(self, obj: libsbml.SpeciesGlyph, layout: libsbml.Layout):
super(SpeciesGlyph, self).set_fields(obj)
obj.setSpeciesId(self.species)
bb = _create_bounding_box(x=self.x, y=self.y, z=self.z, width=self.width, height=self.height, depth=self.depth)
obj.setBoundingBox(bb)
# text glyph
t_glyph = layout.createTextGlyph()
t_glyph.setId("tglyph_{}".format(self.sid))
t_glyph.setGraphicalObjectId(self.sid)
t_glyph.setText(self.text)
bb = _create_bounding_box(x=self.x, y=self.y, z=self.z, width=self.width, height=self.height, depth=self.depth)
t_glyph.setBoundingBox(bb)