def show_summary(O, vertex_labels, out=None, prefix=""):
from libtbx.utils import xlen, plural_s
import sys
if (out is None): out = sys.stdout
if (vertex_labels is None):
fmt = "%%0%dd" % len(str(max(0, O.n_vertices - 1)))
vertex_labels = [fmt % i for i in range(O.n_vertices)]
else:
assert len(vertex_labels) == O.n_vertices
print(prefix + "number of vertices:", O.n_vertices, file=out)
print(prefix + "number of edges:", xlen(O.edge_list), file=out)
if (O.find_cluster_loop_repeats is None):
print(prefix + "find cluster loops: None", file=out)
else:
print(prefix+"find cluster loops: %d repeat%s" % \
plural_s(O.find_cluster_loop_repeats), file=out)
cm = O.cluster_manager
cm.show_summary(out=out, prefix=prefix)
if (cm.fixed_hinges is not None):
for i, j in cm.fixed_hinges:
print(prefix + "tardy fixed hinge:",
vertex_labels[i],
file=out)
print(prefix + " ",
vertex_labels[j],
file=out)
return O
def show_summary(O, out=None, prefix=""):
from libtbx.utils import xlen, plural_s
import sys
if (out is None): out = sys.stdout
print >> out, prefix+"number of fixed vertex lists:", \
len(O.fixed_vertex_lists)
print >> out, prefix+"number of fixed vertices:", \
sum([len(fixed_vertices) for fixed_vertices in O.fixed_vertex_lists])
print >> out, prefix + "number of clusters:", len(O.clusters)
print >> out, prefix+"merge clusters with multiple connections: %d pass%s"\
% plural_s(O.merge_clusters_with_multiple_connections_passes, "es")
print >> out, prefix + "number of hinge edges:", xlen(O.hinge_edges)
print >> out, prefix + "number of loop edges:", xlen(O.loop_edges)
print >> out, prefix+"number of loop edge bendings:", \
xlen(O.loop_edge_bendings)
print >> out, prefix + "number of fixed hinges:", xlen(O.fixed_hinges)
return O
def show_summary(O, out=None, prefix=""):
from libtbx.utils import xlen, plural_s
import sys
if (out is None): out = sys.stdout
print >> out, prefix+"number of fixed vertex lists:", \
len(O.fixed_vertex_lists)
print >> out, prefix+"number of fixed vertices:", \
sum([len(fixed_vertices) for fixed_vertices in O.fixed_vertex_lists])
print >> out, prefix+"number of clusters:", len(O.clusters)
print >> out, prefix+"merge clusters with multiple connections: %d pass%s"\
% plural_s(O.merge_clusters_with_multiple_connections_passes, "es")
print >> out, prefix+"number of hinge edges:", xlen(O.hinge_edges)
print >> out, prefix+"number of loop edges:", xlen(O.loop_edges)
print >> out, prefix+"number of loop edge bendings:", \
xlen(O.loop_edge_bendings)
print >> out, prefix+"number of fixed hinges:", xlen(O.fixed_hinges)
return O
def show_summary(O, vertex_labels, out=None, prefix=""):
from libtbx.utils import xlen, plural_s
import sys
if (out is None): out = sys.stdout
if (vertex_labels is None):
fmt = "%%0%dd" % len(str(max(0, O.n_vertices-1)))
vertex_labels = [fmt % i for i in xrange(O.n_vertices)]
else:
assert len(vertex_labels) == O.n_vertices
print >> out, prefix+"number of vertices:", O.n_vertices
print >> out, prefix+"number of edges:", xlen(O.edge_list)
if (O.find_cluster_loop_repeats is None):
print >> out, prefix+"find cluster loops: None"
else:
print >> out, prefix+"find cluster loops: %d repeat%s" % \
plural_s(O.find_cluster_loop_repeats)
cm = O.cluster_manager
cm.show_summary(out=out, prefix=prefix)
if (cm.fixed_hinges is not None):
for i,j in cm.fixed_hinges:
print >> out, prefix+"tardy fixed hinge:", vertex_labels[i]
print >> out, prefix+" ", vertex_labels[j]
return O