def __init__(self,
gridset_id,
user_id,
passwd,
server,
wait_timeout,
delay_time=0,
delay_interval=120):
"""Construct the instance.
Args:
gridset_id (int): The identifier of the gridset to request.
user_id (str): The Lifemapper username to perform this test.
passwd (str): The password of the specified Lifemapper test user.
server (str): The base Lifemapper server URL to test against.
wait_timeout (int): The number of seconds to wait for a job to complete
before failing.
delay_time (int): The number of seconds to wait before running the test.
delay_interval (int): The number of seconds to wait between test runs.
"""
test_base.LmTest.__init__(self, delay_time=delay_time)
self.user_id = user_id
self.passwd = passwd
self.server = server
self.gridset_id = gridset_id
self.wait_timeout = wait_timeout
self.test_name = 'Waiting test for gridset id: {}'.format(
self.gridset_id)
self.delay_interval = delay_interval
self.client = LmApiClient(server=server)
def get_client(self):
"""Get a client.
Yields:
LmApiClient: A Lifemapper client library instance.
"""
cl = LmApiClient()
if self.user is not None and self.passwd is not None:
cl.auth.login(self.user, self.passwd)
yield cl
cl.auth.logout()
def test_tree_upload_valid(self, data_files):
"""Test uploading valid tree data.
Args:
data_files (SampleDataFiles): Class used to get data files.
"""
tree_filename = data_files.get_tree_uploads()
assert os.path.exists(tree_filename)
cl = LmApiClient()
response = cl.upload.tree(
tree_filename, 'test_tree_{}'.format(random.randint(0, 10000)))
print(response)
assert response
def test_biogeographic_hypotheses_upload_valid(self, data_files):
"""Test uploading valid biogeographic hypotheses.
Args:
data_files (SampleDataFiles): Class used to get data files.
"""
bg_filename = data_files.get_bg_uploads()
assert os.path.exists(bg_filename)
cl = LmApiClient()
response = cl.upload.biogeographic_hypotheses(
bg_filename, 'test_hypotheses_{}'.format(random.randint(0, 10000)))
print(response)
assert response
def test_occurrence_upload_valid(self, data_files):
"""Test uploading valid occurrence data.
Args:
data_files (SampleDataFiles): Class used to get data files.
"""
csv_filename, meta_filename = data_files.get_occ_uploads()
assert os.path.exists(csv_filename)
assert os.path.exists(meta_filename)
cl = LmApiClient()
with open(meta_filename) as meta_in:
metadata = json.dumps(json.load(meta_in))
response = cl.upload.occurrence(
csv_filename, metadata, 'test_{}'.format(random.randint(0, 10000)))
print(response)
assert response
def __init__(
self,
user_id,
passwd,
server,
config,
wait_timeout,
delay_time=0,
delay_interval=3600,
):
"""Construct the simulated submission test.
Args:
user_id (str): The Lifemapper username to perform this test.
passwd (str): The password of the specified Lifemapper test user.
server (str): The base Lifemapper server URL to test against.
config (dict): A dictionary of job submission parameters.
wait_timeout (int): The number of seconds to wait for a job to complete
before failing.
delay_time (int): The number of seconds to wait before running the test.
delay_interval (int): The number of seconds to wait between test runs.
"""
test_base.LmTest.__init__(self, delay_time=delay_time)
self.wait_timeout = wait_timeout
self.user_id = user_id
self.passwd = passwd
self.server = server
self.boom_config = config
# Create a random value used for filenames
rand_val = randint(0, 99999)
self._replace_lookup = {
'TEST_USER': user_id,
'ARCHIVE_NAME': 'Auto_test-{}'.format(rand_val),
'OCCURRENCE_FILENAME': 'Auto_test_occ-{}'.format(rand_val),
}
self.test_name = 'lmclient SDM BOOM Job test (user: {}, archive: {})'.format(
user_id, self._replace_lookup['ARCHIVE_NAME'])
self.client = LmApiClient(server=server)
def __init__(self,
gridset_id,
user_id,
passwd,
server,
delay_time=0,
delay_interval=60):
"""Construct the instance.
Args:
gridset_id (int): The identifier of the gridset to request.
user_id (str): The Lifemapper username to perform this test.
passwd (str): The password of the specified Lifemapper test user.
server (str): The base Lifemapper server URL to test against.
delay_time (int): The number of seconds to wait before running the test.
delay_interval (int): The number of seconds to wait between test runs.
"""
test_base.LmTest.__init__(self, delay_time=delay_time)
self.user_id = user_id
self.passwd = passwd
self.server = server
self.gridset_id = gridset_id
self.test_name = 'Gridset {} validation test'.format(self.gridset_id)
self.client = LmApiClient(server=server)